Wall clock time and date at job start Tue Mar 31 2020 19:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34330 * 126.44088 * 2 1 4 4 N 1.34485 * 107.66950 * 180.02562 * 3 2 1 5 5 C 1.30260 * 108.69814 * 359.97438 * 4 3 2 6 6 C 1.50699 * 125.61801 * 179.97438 * 5 4 3 7 7 O 1.42904 * 109.46862 * 90.02734 * 6 5 4 8 8 C 1.42897 * 113.99901 * 179.97438 * 7 6 5 9 9 C 1.50699 * 109.47522 * 179.97438 * 8 7 6 10 10 O 1.21283 * 119.99218 * 0.02562 * 9 8 7 11 11 N 1.34769 * 120.00303 * 179.97438 * 9 8 7 12 12 C 1.46923 * 120.62982 * 0.02562 * 11 9 8 13 13 C 1.53195 * 108.77868 * 126.37096 * 12 11 9 14 14 C 1.53040 * 109.31365 * 54.63080 * 13 12 11 15 15 H 1.09001 * 109.46185 * 58.65845 * 14 13 12 16 16 N 1.46496 * 109.45858 * 178.63135 * 14 13 12 17 17 C 1.36932 * 120.00133 * 274.99650 * 16 14 13 18 18 H 1.08001 * 120.00167 * 0.02562 * 17 16 14 19 19 C 1.38814 * 119.99813 * 180.02562 * 17 16 14 20 20 N 1.31626 * 119.99819 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 120.00358 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47037 * 89.99777 * 21 19 17 23 23 H 1.48499 * 109.47009 * 209.99826 * 21 19 17 24 24 H 1.48501 * 109.46818 * 329.99871 * 21 19 17 25 25 C 1.53047 * 109.53721 * 298.64025 * 14 13 12 26 26 H 1.08997 * 109.49190 * 301.41163 * 25 14 13 27 27 C 1.53006 * 109.49351 * 181.34968 * 25 14 13 28 28 C 1.46928 * 120.63102 * 179.72061 * 11 9 8 29 29 O 1.33967 * 108.75886 * 359.97438 * 5 4 3 30 30 H 1.08999 * 109.46700 * 89.99982 * 1 2 3 31 31 H 1.08990 * 109.47109 * 210.00053 * 1 2 3 32 32 H 1.09001 * 109.47371 * 330.00567 * 1 2 3 33 33 H 1.08003 * 126.17092 * 0.02562 * 3 2 1 34 34 H 1.09003 * 109.46769 * 210.02116 * 6 5 4 35 35 H 1.09001 * 109.47149 * 330.02647 * 6 5 4 36 36 H 1.09001 * 109.47055 * 300.00038 * 8 7 6 37 37 H 1.09005 * 109.47281 * 59.99498 * 8 7 6 38 38 H 1.09009 * 109.58673 * 246.15384 * 12 11 9 39 39 H 1.09003 * 109.59106 * 6.43738 * 12 11 9 40 40 H 1.08997 * 109.49941 * 174.58556 * 13 12 11 41 41 H 1.09004 * 109.49020 * 294.64911 * 13 12 11 42 42 H 0.97006 * 120.00119 * 95.00082 * 16 14 13 43 43 H 0.96993 * 119.99953 * 179.97438 * 20 19 17 44 44 H 1.08991 * 109.47021 * 60.00125 * 27 25 14 45 45 H 1.09006 * 109.46427 * 179.97438 * 27 25 14 46 46 H 1.08996 * 109.47121 * 299.99413 * 27 25 14 47 47 H 1.08997 * 109.58716 * 353.42173 * 28 11 9 48 48 H 1.09000 * 109.58737 * 113.84531 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5783 0.6479 -0.0006 5 6 3.5766 -0.6547 -0.0004 6 6 4.8005 -1.5339 -0.0014 7 8 5.1883 -1.8121 1.3456 8 6 6.3449 -2.6437 1.4575 9 6 6.6620 -2.8702 2.9133 10 8 5.9655 -2.3692 3.7705 11 7 7.7186 -3.6303 3.2625 12 6 8.5712 -4.2443 2.2354 13 6 10.0276 -3.8533 2.5052 14 6 10.3971 -4.2364 3.9400 15 1 10.2550 -5.3083 4.0778 16 7 11.7991 -3.8937 4.1910 17 6 12.7914 -4.7699 3.8410 18 1 12.5405 -5.7136 3.3794 19 6 14.1199 -4.4453 4.0793 20 7 15.0738 -5.2874 3.7423 21 14 14.5539 -2.8135 4.8782 22 1 14.5881 -2.9783 6.3536 23 1 15.8866 -2.3668 4.3990 24 1 13.5321 -1.7983 4.5169 25 6 9.5027 -3.4735 4.9199 26 1 9.6259 -2.4015 4.7658 27 6 9.8953 -3.8317 6.3547 28 6 8.0439 -3.8552 4.6776 29 8 2.3075 -1.0839 0.0009 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8899 0.5138 32 1 -0.3634 0.8900 0.5137 33 1 1.9822 2.1113 0.0004 34 1 4.5760 -2.4686 -0.5152 35 1 5.6145 -1.0230 -0.5157 36 1 6.1521 -3.6014 0.9740 37 1 7.1912 -2.1562 0.9733 38 1 8.4703 -5.3289 2.2773 39 1 8.2712 -3.8872 1.2502 40 1 10.6805 -4.3793 1.8086 41 1 10.1459 -2.7778 2.3733 42 1 12.0246 -3.0460 4.6052 43 1 16.0020 -5.0605 3.9085 44 1 10.9366 -3.5585 6.5254 45 1 9.2583 -3.2877 7.0522 46 1 9.7709 -4.9035 6.5086 47 1 7.3979 -3.2396 5.3034 48 1 7.8991 -4.9073 4.9231 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482424423.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:13 Heat of formation + Delta-G solvation = -63.795378 kcal Electronic energy + Delta-G solvation = -28876.113736 eV Core-core repulsion = 24739.582149 eV Total energy + Delta-G solvation = -4136.531588 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.40642 -41.38877 -39.47411 -38.48539 -36.28323 -35.85417 -34.55303 -33.72406 -33.22485 -31.53464 -30.78134 -29.05316 -27.28469 -26.43312 -25.91268 -24.10016 -23.39937 -23.00537 -22.18131 -21.50649 -20.41581 -19.42428 -18.77352 -18.21055 -17.83477 -17.39653 -17.31619 -16.75525 -16.59114 -16.05613 -15.94738 -15.77508 -15.32538 -15.24103 -14.86697 -14.66888 -14.49540 -14.28100 -14.09955 -13.89263 -13.70832 -13.44868 -13.31017 -13.17257 -13.09085 -12.95443 -12.86060 -12.82478 -12.46675 -12.44418 -12.11865 -11.99003 -11.87144 -11.74971 -11.65353 -11.16145 -10.97913 -10.91976 -10.78283 -9.77546 -9.71107 -9.25319 -7.98792 -5.30083 0.22676 1.33007 1.38955 1.39789 1.46936 1.51970 1.62224 1.84357 2.50020 2.73535 3.18117 3.33064 3.52257 3.58013 3.76409 3.79750 3.98737 3.99663 4.02658 4.08176 4.16537 4.20778 4.26676 4.29588 4.38917 4.47869 4.49480 4.61879 4.62787 4.66480 4.74150 4.81029 4.84535 4.95524 4.98699 5.01554 5.13468 5.15404 5.25112 5.26477 5.38335 5.47971 5.60625 5.82294 5.83758 6.25602 6.36279 6.62280 7.09988 7.11753 7.89216 8.06828 9.22618 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.023604 B = 0.001957 C = 0.001920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.939869 B =14301.809958 C =14579.480938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.039 4.039 3 C -0.068 4.068 4 N -0.492 5.492 5 C 0.167 3.833 6 C 0.159 3.841 7 O -0.396 6.396 8 C 0.048 3.952 9 C 0.510 3.490 10 O -0.579 6.579 11 N -0.604 5.604 12 C 0.111 3.889 13 C -0.147 4.147 14 C 0.180 3.820 15 H 0.052 0.948 16 N -0.748 5.748 17 C -0.216 4.216 18 H 0.065 0.935 19 C -0.062 4.062 20 N -0.983 5.983 21 Si 0.945 3.055 22 H -0.282 1.282 23 H -0.300 1.300 24 H -0.257 1.257 25 C -0.104 4.104 26 H 0.059 0.941 27 C -0.136 4.136 28 C 0.127 3.873 29 O -0.209 6.209 30 H 0.105 0.895 31 H 0.083 0.917 32 H 0.115 0.885 33 H 0.209 0.791 34 H 0.117 0.883 35 H 0.117 0.883 36 H 0.126 0.874 37 H 0.114 0.886 38 H 0.090 0.910 39 H 0.117 0.883 40 H 0.069 0.931 41 H 0.054 0.946 42 H 0.361 0.639 43 H 0.255 0.745 44 H 0.044 0.956 45 H 0.065 0.935 46 H 0.060 0.940 47 H 0.080 0.920 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.365 7.292 -10.416 31.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.092 4.092 3 C -0.207 4.207 4 N -0.223 5.223 5 C -0.039 4.039 6 C 0.082 3.918 7 O -0.314 6.314 8 C -0.031 4.031 9 C 0.299 3.701 10 O -0.458 6.458 11 N -0.337 5.337 12 C -0.011 4.011 13 C -0.187 4.187 14 C 0.072 3.928 15 H 0.070 0.930 16 N -0.391 5.391 17 C -0.347 4.347 18 H 0.082 0.918 19 C -0.253 4.253 20 N -0.634 5.634 21 Si 0.773 3.227 22 H -0.209 1.209 23 H -0.227 1.227 24 H -0.182 1.182 25 C -0.124 4.124 26 H 0.078 0.922 27 C -0.194 4.194 28 C 0.004 3.996 29 O -0.096 6.096 30 H 0.123 0.877 31 H 0.102 0.898 32 H 0.133 0.867 33 H 0.226 0.774 34 H 0.135 0.865 35 H 0.134 0.866 36 H 0.144 0.856 37 H 0.132 0.868 38 H 0.108 0.892 39 H 0.135 0.865 40 H 0.088 0.912 41 H 0.073 0.927 42 H 0.194 0.806 43 H 0.064 0.936 44 H 0.064 0.936 45 H 0.084 0.916 46 H 0.079 0.921 47 H 0.099 0.901 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -29.196 7.718 -9.886 31.776 hybrid contribution 0.771 0.527 0.549 1.083 sum -28.425 8.245 -9.337 31.035 Atomic orbital electron populations 1.20557 0.80567 1.05839 1.05463 1.24440 0.96868 0.83782 1.04109 1.23636 0.87045 1.02087 1.07883 1.70396 1.24951 1.10002 1.16991 1.26128 0.84725 0.90205 1.02881 1.20809 0.88662 0.97863 0.84418 1.88000 1.46647 1.70629 1.26161 1.22489 0.89740 0.97908 0.92950 1.20818 0.80028 0.77512 0.91719 1.90700 1.50927 1.50715 1.53472 1.48165 1.27814 1.49692 1.08024 1.22024 0.88438 0.99267 0.91375 1.22476 0.95817 1.01395 0.99031 1.20444 0.82152 0.97388 0.92791 0.93003 1.42813 1.02230 1.19698 1.74318 1.19018 0.86352 0.98375 1.30918 0.91754 1.25354 0.95780 1.01168 1.03040 1.69859 0.99573 1.38248 1.55767 0.85563 0.77130 0.81457 0.78508 1.20900 1.22740 1.18219 1.21585 0.94492 0.99913 0.96427 0.92206 1.21642 1.01047 1.01951 0.94709 1.21479 0.94433 1.02115 0.81586 1.84389 1.18017 1.37597 1.69552 0.87681 0.89804 0.86674 0.77393 0.86537 0.86564 0.85613 0.86802 0.89206 0.86482 0.91193 0.92681 0.80595 0.93613 0.93649 0.91557 0.92127 0.90144 0.89748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.43 10.43 71.24 0.74 0.31 16 2 C -0.04 -0.65 7.39 24.79 0.18 -0.47 16 3 C -0.07 -1.29 11.80 83.39 0.98 -0.30 16 4 N -0.49 -12.27 11.30 -303.82 -3.43 -15.71 16 5 C 0.17 3.75 7.97 88.34 0.70 4.45 16 6 C 0.16 2.49 6.56 71.24 0.47 2.96 16 7 O -0.40 -9.11 9.86 -129.94 -1.28 -10.40 16 8 C 0.05 0.78 4.76 71.24 0.34 1.12 16 9 C 0.51 13.16 7.77 87.66 0.68 13.84 16 10 O -0.58 -20.88 15.91 16.00 0.25 -20.62 16 11 N -0.60 -13.93 2.98 -819.81 -2.44 -16.37 16 12 C 0.11 2.05 6.34 86.36 0.55 2.60 16 13 C -0.15 -4.04 5.66 30.67 0.17 -3.87 16 14 C 0.18 6.02 2.20 45.02 0.10 6.12 16 15 H 0.05 1.81 8.08 -2.39 -0.02 1.79 16 16 N -0.75 -32.43 4.21 -322.81 -1.36 -33.79 16 17 C -0.22 -11.52 10.41 84.03 0.87 -10.65 16 18 H 0.06 3.73 8.06 -2.91 -0.02 3.70 16 19 C -0.06 -3.54 5.50 84.86 0.47 -3.08 16 20 N -0.98 -61.49 13.97 21.65 0.30 -61.19 16 21 Si 0.94 45.02 27.74 68.60 1.90 46.92 16 22 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 23 H -0.30 -14.67 7.11 99.48 0.71 -13.96 16 24 H -0.26 -11.22 6.52 99.48 0.65 -10.57 16 25 C -0.10 -3.01 2.44 -10.87 -0.03 -3.03 16 26 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 27 C -0.14 -3.87 9.03 71.98 0.65 -3.22 16 28 C 0.13 3.21 5.69 86.20 0.49 3.70 16 29 O -0.21 -4.50 10.77 -3.68 -0.04 -4.54 16 30 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 31 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.11 0.26 8.14 -2.39 -0.02 0.24 16 33 H 0.21 2.50 8.06 -2.91 -0.02 2.47 16 34 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.13 1.05 7.94 -2.39 -0.02 1.03 16 37 H 0.11 1.29 7.70 -2.38 -0.02 1.27 16 38 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 39 H 0.12 1.28 5.93 -2.39 -0.01 1.26 16 40 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 41 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 42 H 0.36 15.66 5.36 -92.70 -0.50 15.16 16 43 H 0.25 15.36 8.31 -92.71 -0.77 14.59 16 44 H 0.04 1.49 7.36 -2.39 -0.02 1.47 16 45 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 46 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 47 H 0.08 2.25 7.01 -2.39 -0.02 2.23 16 48 H 0.08 1.90 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -83.67 392.93 1.69 -81.98 By element: Atomic # 1 Polarization: 22.81 SS G_CDS: 0.41 Total: 23.22 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: 7.38 Total: 10.49 kcal Atomic # 7 Polarization: -120.12 SS G_CDS: -6.93 Total: -127.05 kcal Atomic # 8 Polarization: -34.49 SS G_CDS: -1.07 Total: -35.56 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 1.90 Total: 46.92 kcal Total: -83.67 1.69 -81.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482424423.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.184 kcal (2) G-P(sol) polarization free energy of solvation -83.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds