Wall clock time and date at job start Tue Mar 31 2020 20:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34179 * 127.02206 * 2 1 4 4 O 1.34220 * 109.11867 * 179.83398 * 3 2 1 5 5 C 1.33650 * 110.91270 * 0.45363 * 4 3 2 6 6 C 1.50696 * 125.80213 * 179.70652 * 5 4 3 7 7 C 1.36417 * 108.39581 * 359.72970 * 5 4 3 8 8 C 1.47379 * 127.19220 * 180.02562 * 7 5 4 9 9 O 1.21611 * 119.99697 * 269.96922 * 8 7 5 10 10 N 1.34769 * 120.00047 * 89.96932 * 8 7 5 11 11 C 1.46499 * 120.00036 * 179.97438 * 10 8 7 12 12 H 1.08995 * 109.47222 * 34.99870 * 11 10 8 13 13 C 1.53004 * 109.47078 * 274.99998 * 11 10 8 14 14 C 1.52997 * 109.47253 * 155.00295 * 11 10 8 15 15 C 1.53001 * 109.47050 * 295.00064 * 14 11 10 16 16 N 1.46902 * 109.46961 * 180.02562 * 15 14 11 17 17 C 1.46898 * 110.99773 * 180.02562 * 16 15 14 18 18 C 1.50701 * 109.47034 * 179.97438 * 17 16 15 19 19 O 1.21293 * 120.00003 * 0.02562 * 18 17 16 20 20 N 1.34784 * 119.99983 * 179.97438 * 18 17 16 21 21 C 1.37088 * 120.00036 * 180.02562 * 20 18 17 22 22 H 1.08004 * 120.00280 * 0.02562 * 21 20 18 23 23 C 1.38950 * 120.00156 * 179.97438 * 21 20 18 24 24 N 1.31414 * 120.00061 * 179.97438 * 23 21 20 25 25 Si 1.86804 * 119.99978 * 0.02562 * 23 21 20 26 26 H 1.48497 * 109.46921 * 89.99601 * 25 23 21 27 27 H 1.48493 * 109.47013 * 209.99941 * 25 23 21 28 28 H 1.48497 * 109.46702 * 330.00019 * 25 23 21 29 29 H 1.09002 * 109.47152 * 269.68241 * 1 2 3 30 30 H 1.09001 * 109.46980 * 149.68342 * 1 2 3 31 31 H 1.09004 * 109.47113 * 29.68323 * 1 2 3 32 32 H 1.08000 * 125.43845 * 0.02562 * 3 2 1 33 33 H 1.09004 * 109.47049 * 270.02550 * 6 5 4 34 34 H 1.09000 * 109.46923 * 30.02404 * 6 5 4 35 35 H 1.08994 * 109.47090 * 150.02828 * 6 5 4 36 36 H 0.97006 * 120.00117 * 0.02562 * 10 8 7 37 37 H 1.08999 * 109.47212 * 179.97438 * 13 11 10 38 38 H 1.08996 * 109.47732 * 299.99971 * 13 11 10 39 39 H 1.09006 * 109.46810 * 60.00181 * 13 11 10 40 40 H 1.09004 * 109.47294 * 55.00312 * 14 11 10 41 41 H 1.08998 * 109.47611 * 175.00111 * 14 11 10 42 42 H 1.08999 * 109.46942 * 299.99602 * 15 14 11 43 43 H 1.08997 * 109.46744 * 60.00131 * 15 14 11 44 44 H 1.00900 * 110.99868 * 303.95062 * 16 15 14 45 45 H 1.08998 * 109.47486 * 299.99644 * 17 16 15 46 46 H 1.09006 * 109.47261 * 60.00094 * 17 16 15 47 47 H 0.96997 * 119.99755 * 0.02562 * 20 18 17 48 48 H 0.97003 * 119.99776 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3149 1.0713 0.0000 4 8 3.5921 0.6587 0.0037 5 6 3.6623 -0.6760 -0.0037 6 6 4.9292 -1.4921 -0.0087 7 6 2.3923 -1.1738 -0.0065 8 6 1.9913 -2.5920 -0.0139 9 8 1.8256 -3.1715 -1.0701 10 7 1.8084 -3.2466 1.1499 11 6 1.4093 -4.6562 1.1426 12 1 1.8770 -5.1618 0.2978 13 6 -0.1124 -4.7548 1.0171 14 6 1.8576 -5.3199 2.4462 15 6 3.3861 -5.3323 2.5128 16 7 3.8164 -5.9702 3.7642 17 6 5.2818 -5.9995 3.8632 18 6 5.6847 -6.6589 5.1570 19 8 4.8348 -7.0649 5.9212 20 7 6.9896 -6.7984 5.4645 21 6 7.3562 -7.3987 6.6412 22 1 6.5994 -7.7602 7.3217 23 6 8.7013 -7.5429 6.9580 24 7 9.0527 -8.1179 8.0862 25 14 10.0104 -6.9182 5.7808 26 1 10.3396 -5.5081 6.1098 27 1 11.2308 -7.7544 5.9087 28 1 9.5010 -6.9956 4.3881 29 1 -0.3633 -0.0057 1.0277 30 1 -0.3633 -0.8871 -0.5188 31 1 -0.3633 0.8928 -0.5089 32 1 1.9895 2.1011 0.0004 33 1 5.2345 -1.6828 -1.0376 34 1 5.7166 -0.9437 0.5083 35 1 4.7527 -2.4400 0.4995 36 1 1.9402 -2.7842 1.9924 37 1 -0.4093 -5.8035 1.0112 38 1 -0.5802 -4.2491 1.8618 39 1 -0.4317 -4.2819 0.0883 40 1 1.4614 -4.7605 3.2937 41 1 1.4841 -6.3434 2.4800 42 1 3.7821 -5.8918 1.6653 43 1 3.7595 -4.3089 2.4791 44 1 3.4095 -5.5087 4.5638 45 1 5.6915 -6.5629 3.0249 46 1 5.6681 -4.9804 3.8395 47 1 7.6693 -6.4740 4.8532 48 1 9.9918 -8.2190 8.3072 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482828324.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:54 Heat of formation + Delta-G solvation = -67.606713 kcal Electronic energy + Delta-G solvation = -28622.274057 eV Core-core repulsion = 24485.577198 eV Total energy + Delta-G solvation = -4136.696860 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.92841 -39.93802 -38.52148 -37.00454 -35.07578 -34.33812 -33.89705 -33.00564 -31.75674 -31.57787 -29.41313 -28.48791 -26.89403 -26.40873 -24.28668 -23.65868 -22.22014 -21.11983 -20.49339 -20.08731 -19.39307 -18.38226 -18.08207 -16.95041 -16.46241 -16.20397 -16.11104 -15.62120 -15.25965 -14.97264 -14.55532 -14.40837 -14.22204 -13.95731 -13.73765 -13.68936 -13.62027 -13.47150 -13.30864 -13.08250 -13.01346 -12.78430 -12.70709 -12.49039 -12.34287 -12.16158 -11.79738 -11.72722 -11.44108 -11.23776 -11.17280 -11.03700 -10.61103 -10.33307 -9.99129 -9.79788 -9.59106 -9.40427 -8.86703 -8.61469 -8.22049 -8.16383 -6.32624 -3.84132 1.24145 1.82969 2.24050 2.45567 2.97876 3.01357 3.04962 3.13720 3.71951 3.96557 4.06252 4.08835 4.37626 4.53076 4.64563 4.71421 4.74813 4.80752 4.87617 5.03493 5.05562 5.14531 5.17611 5.20111 5.21604 5.27398 5.28733 5.42546 5.44082 5.46766 5.52389 5.57960 5.68663 5.75417 5.77948 5.83653 5.87635 5.94142 5.98769 6.02104 6.24334 6.67807 7.05298 7.18624 7.53525 7.56824 7.91260 8.12779 8.58083 8.93327 9.40722 9.80819 10.80460 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.013393 B = 0.002222 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.160111 B =12600.193126 C =14019.157450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.149 4.149 3 C -0.040 4.040 4 O -0.172 6.172 5 C 0.048 3.952 6 C -0.082 4.082 7 C -0.234 4.234 8 C 0.596 3.404 9 O -0.532 6.532 10 N -0.715 5.715 11 C 0.142 3.858 12 H 0.091 0.909 13 C -0.162 4.162 14 C -0.125 4.125 15 C 0.059 3.941 16 N -0.669 5.669 17 C 0.048 3.952 18 C 0.449 3.551 19 O -0.565 6.565 20 N -0.590 5.590 21 C -0.305 4.305 22 H 0.120 0.880 23 C 0.041 3.959 24 N -0.881 5.881 25 Si 0.880 3.120 26 H -0.271 1.271 27 H -0.276 1.276 28 H -0.269 1.269 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.207 0.793 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.401 0.599 37 H 0.069 0.931 38 H 0.057 0.943 39 H 0.059 0.941 40 H 0.069 0.931 41 H 0.092 0.908 42 H 0.071 0.929 43 H 0.025 0.975 44 H 0.350 0.650 45 H 0.087 0.913 46 H 0.043 0.957 47 H 0.370 0.630 48 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.150 18.882 -18.805 30.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.151 4.151 3 C -0.106 4.106 4 O -0.069 6.069 5 C -0.004 4.004 6 C -0.139 4.139 7 C -0.238 4.238 8 C 0.381 3.619 9 O -0.408 6.408 10 N -0.367 5.367 11 C 0.037 3.963 12 H 0.109 0.891 13 C -0.220 4.220 14 C -0.163 4.163 15 C -0.070 4.070 16 N -0.301 5.301 17 C -0.084 4.084 18 C 0.235 3.765 19 O -0.447 6.447 20 N -0.230 5.230 21 C -0.434 4.434 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.521 5.521 25 Si 0.706 3.294 26 H -0.197 1.197 27 H -0.201 1.201 28 H -0.195 1.195 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.224 0.776 33 H 0.108 0.892 34 H 0.104 0.896 35 H 0.109 0.891 36 H 0.236 0.764 37 H 0.088 0.912 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.088 0.912 41 H 0.111 0.889 42 H 0.090 0.910 43 H 0.043 0.957 44 H 0.169 0.831 45 H 0.105 0.895 46 H 0.061 0.939 47 H 0.203 0.797 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -14.477 17.627 -19.134 29.772 hybrid contribution 1.312 1.626 -0.229 2.102 sum -13.165 19.253 -19.363 30.314 Atomic orbital electron populations 1.20196 0.88603 1.03049 1.02423 1.21334 0.96798 0.90519 1.06433 1.23645 0.79596 0.99579 1.07750 1.83736 1.29610 1.21895 1.71617 1.22572 0.96055 0.80823 1.00947 1.20469 0.91210 0.97738 1.04440 1.21018 0.93199 0.94014 1.15601 1.17269 0.76236 0.84550 0.83860 1.90810 1.50667 1.68248 1.31067 1.46175 1.69735 1.12367 1.08403 1.21043 0.95326 0.80620 0.99290 0.89065 1.22158 0.95003 1.02644 1.02235 1.21886 0.95804 1.02531 0.96129 1.21976 0.94831 0.96588 0.93627 1.60057 1.07187 1.58678 1.04197 1.21701 0.89158 0.99230 0.98355 1.19715 0.83070 0.85377 0.88339 1.90565 1.49760 1.52661 1.51674 1.42210 1.05627 1.54778 1.20384 1.19431 0.93784 1.34492 0.95685 0.86279 1.25048 0.97151 0.97395 0.96611 1.69624 1.17751 1.42391 1.22328 0.86666 0.82288 0.79623 0.80792 1.19666 1.20144 1.19462 0.91007 0.91341 0.91106 0.77648 0.89153 0.89574 0.89129 0.76407 0.91209 0.92349 0.92199 0.91215 0.88903 0.91004 0.95656 0.83086 0.89499 0.93877 0.79698 0.91601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.56 10.38 36.01 0.37 -0.19 16 2 C -0.15 -1.28 6.38 -102.49 -0.65 -1.93 16 3 C -0.04 -0.29 11.96 29.30 0.35 0.06 16 4 O -0.17 -1.57 10.52 7.65 0.08 -1.49 16 5 C 0.05 0.45 7.37 -34.97 -0.26 0.19 16 6 C -0.08 -0.58 10.24 36.00 0.37 -0.21 16 7 C -0.23 -2.37 6.07 -103.27 -0.63 -3.00 16 8 C 0.60 6.57 7.22 -12.54 -0.09 6.48 16 9 O -0.53 -7.79 16.77 5.27 0.09 -7.70 16 10 N -0.72 -6.12 4.53 -54.90 -0.25 -6.37 16 11 C 0.14 1.23 2.57 -67.93 -0.17 1.05 16 12 H 0.09 0.93 7.58 -51.93 -0.39 0.54 16 13 C -0.16 -1.29 9.48 37.16 0.35 -0.94 16 14 C -0.13 -1.10 5.01 -26.73 -0.13 -1.23 16 15 C 0.06 0.63 5.57 -3.82 -0.02 0.61 16 16 N -0.67 -9.79 6.13 -115.06 -0.70 -10.49 16 17 C 0.05 0.78 6.17 -4.98 -0.03 0.75 16 18 C 0.45 10.08 7.82 -10.98 -0.09 9.99 16 19 O -0.56 -15.04 15.78 5.55 0.09 -14.95 16 20 N -0.59 -13.95 5.09 -10.96 -0.06 -14.01 16 21 C -0.31 -8.60 10.16 -14.94 -0.15 -8.75 16 22 H 0.12 3.84 7.39 -52.48 -0.39 3.45 16 23 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 24 N -0.88 -25.64 13.96 55.50 0.77 -24.87 16 25 Si 0.88 19.20 27.74 -169.99 -4.71 14.49 16 26 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16 27 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 28 H -0.27 -5.35 6.52 56.52 0.37 -4.98 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.21 0.71 8.06 -52.49 -0.42 0.29 16 33 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.09 0.63 7.93 -51.93 -0.41 0.21 16 36 H 0.40 2.83 8.59 -40.82 -0.35 2.48 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.03 0.24 7.75 -51.93 -0.40 -0.16 16 44 H 0.35 5.25 8.43 -39.29 -0.33 4.91 16 45 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 46 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 47 H 0.37 7.65 5.76 -40.82 -0.24 7.41 16 48 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 408.79 15.07 6.16 6.16 Total: -1.00 -35.77 408.79 -7.01 -42.78 By element: Atomic # 1 Polarization: 20.14 SS G_CDS: -7.60 Total: 12.54 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: -0.88 Total: 3.90 kcal Atomic # 7 Polarization: -55.50 SS G_CDS: -0.23 Total: -55.74 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: 0.26 Total: -24.14 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -4.71 Total: 14.49 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -35.77 -7.01 -42.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482828324.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.822 kcal (2) G-P(sol) polarization free energy of solvation -35.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds