Wall clock time and date at job start Tue Mar 31 2020 20:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34179 * 127.02206 * 2 1 4 4 O 1.34220 * 109.11867 * 179.83398 * 3 2 1 5 5 C 1.33650 * 110.91270 * 0.45363 * 4 3 2 6 6 C 1.50696 * 125.80213 * 179.70652 * 5 4 3 7 7 C 1.36417 * 108.39581 * 359.72970 * 5 4 3 8 8 C 1.47379 * 127.19220 * 180.02562 * 7 5 4 9 9 O 1.21611 * 119.99697 * 269.96922 * 8 7 5 10 10 N 1.34769 * 120.00047 * 89.96932 * 8 7 5 11 11 C 1.46499 * 120.00036 * 179.97438 * 10 8 7 12 12 H 1.08995 * 109.47222 * 34.99870 * 11 10 8 13 13 C 1.53004 * 109.47078 * 274.99998 * 11 10 8 14 14 C 1.52997 * 109.47253 * 155.00295 * 11 10 8 15 15 C 1.53001 * 109.47050 * 295.00064 * 14 11 10 16 16 N 1.46902 * 109.46961 * 180.02562 * 15 14 11 17 17 C 1.46898 * 110.99773 * 180.02562 * 16 15 14 18 18 C 1.50701 * 109.47034 * 179.97438 * 17 16 15 19 19 O 1.21293 * 120.00003 * 0.02562 * 18 17 16 20 20 N 1.34784 * 119.99983 * 179.97438 * 18 17 16 21 21 C 1.37088 * 120.00036 * 180.02562 * 20 18 17 22 22 H 1.08004 * 120.00280 * 0.02562 * 21 20 18 23 23 C 1.38950 * 120.00156 * 179.97438 * 21 20 18 24 24 N 1.31414 * 120.00061 * 179.97438 * 23 21 20 25 25 Si 1.86804 * 119.99978 * 0.02562 * 23 21 20 26 26 H 1.48497 * 109.46921 * 89.99601 * 25 23 21 27 27 H 1.48493 * 109.47013 * 209.99941 * 25 23 21 28 28 H 1.48497 * 109.46702 * 330.00019 * 25 23 21 29 29 H 1.09002 * 109.47152 * 269.68241 * 1 2 3 30 30 H 1.09001 * 109.46980 * 149.68342 * 1 2 3 31 31 H 1.09004 * 109.47113 * 29.68323 * 1 2 3 32 32 H 1.08000 * 125.43845 * 0.02562 * 3 2 1 33 33 H 1.09004 * 109.47049 * 270.02550 * 6 5 4 34 34 H 1.09000 * 109.46923 * 30.02404 * 6 5 4 35 35 H 1.08994 * 109.47090 * 150.02828 * 6 5 4 36 36 H 0.97006 * 120.00117 * 0.02562 * 10 8 7 37 37 H 1.08999 * 109.47212 * 179.97438 * 13 11 10 38 38 H 1.08996 * 109.47732 * 299.99971 * 13 11 10 39 39 H 1.09006 * 109.46810 * 60.00181 * 13 11 10 40 40 H 1.09004 * 109.47294 * 55.00312 * 14 11 10 41 41 H 1.08998 * 109.47611 * 175.00111 * 14 11 10 42 42 H 1.08999 * 109.46942 * 299.99602 * 15 14 11 43 43 H 1.08997 * 109.46744 * 60.00131 * 15 14 11 44 44 H 1.00900 * 110.99868 * 303.95062 * 16 15 14 45 45 H 1.08998 * 109.47486 * 299.99644 * 17 16 15 46 46 H 1.09006 * 109.47261 * 60.00094 * 17 16 15 47 47 H 0.96997 * 119.99755 * 0.02562 * 20 18 17 48 48 H 0.97003 * 119.99776 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3149 1.0713 0.0000 4 8 3.5921 0.6587 0.0037 5 6 3.6623 -0.6760 -0.0037 6 6 4.9292 -1.4921 -0.0087 7 6 2.3923 -1.1738 -0.0065 8 6 1.9913 -2.5920 -0.0139 9 8 1.8256 -3.1715 -1.0701 10 7 1.8084 -3.2466 1.1499 11 6 1.4093 -4.6562 1.1426 12 1 1.8770 -5.1618 0.2978 13 6 -0.1124 -4.7548 1.0171 14 6 1.8576 -5.3199 2.4462 15 6 3.3861 -5.3323 2.5128 16 7 3.8164 -5.9702 3.7642 17 6 5.2818 -5.9995 3.8632 18 6 5.6847 -6.6589 5.1570 19 8 4.8348 -7.0649 5.9212 20 7 6.9896 -6.7984 5.4645 21 6 7.3562 -7.3987 6.6412 22 1 6.5994 -7.7602 7.3217 23 6 8.7013 -7.5429 6.9580 24 7 9.0527 -8.1179 8.0862 25 14 10.0104 -6.9182 5.7808 26 1 10.3396 -5.5081 6.1098 27 1 11.2308 -7.7544 5.9087 28 1 9.5010 -6.9956 4.3881 29 1 -0.3633 -0.0057 1.0277 30 1 -0.3633 -0.8871 -0.5188 31 1 -0.3633 0.8928 -0.5089 32 1 1.9895 2.1011 0.0004 33 1 5.2345 -1.6828 -1.0376 34 1 5.7166 -0.9437 0.5083 35 1 4.7527 -2.4400 0.4995 36 1 1.9402 -2.7842 1.9924 37 1 -0.4093 -5.8035 1.0112 38 1 -0.5802 -4.2491 1.8618 39 1 -0.4317 -4.2819 0.0883 40 1 1.4614 -4.7605 3.2937 41 1 1.4841 -6.3434 2.4800 42 1 3.7821 -5.8918 1.6653 43 1 3.7595 -4.3089 2.4791 44 1 3.4095 -5.5087 4.5638 45 1 5.6915 -6.5629 3.0249 46 1 5.6681 -4.9804 3.8395 47 1 7.6693 -6.4740 4.8532 48 1 9.9918 -8.2190 8.3072 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482828324.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:53 Heat of formation + Delta-G solvation = -95.543398 kcal Electronic energy + Delta-G solvation = -28623.485483 eV Core-core repulsion = 24485.577198 eV Total energy + Delta-G solvation = -4137.908285 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.54614 -40.77346 -40.28258 -37.96681 -36.30844 -35.72865 -34.96002 -33.75207 -33.61160 -32.45626 -30.39551 -29.05139 -27.89219 -27.42994 -25.67091 -24.65945 -23.14896 -21.88975 -21.27306 -21.20205 -20.68905 -20.24781 -18.77128 -17.81314 -17.70409 -17.21816 -17.01190 -16.74352 -16.64400 -16.04385 -15.75512 -15.41856 -15.22802 -15.05946 -14.94821 -14.58963 -14.45389 -14.29084 -14.16353 -14.01326 -13.85589 -13.81068 -13.60573 -13.54265 -13.30014 -13.27843 -12.98503 -12.83050 -12.41521 -12.33677 -12.25634 -12.07746 -11.97433 -11.80524 -11.50976 -11.19809 -10.45883 -10.45182 -10.24857 -10.18341 -9.45490 -9.31379 -8.41040 -6.02034 0.61106 1.22821 1.30923 1.35829 1.42140 1.45202 1.87437 1.95683 2.23417 2.27131 2.70615 3.15449 3.36366 3.51839 3.72131 3.89056 3.93620 4.05532 4.16757 4.19166 4.20741 4.34806 4.42184 4.42808 4.50530 4.54239 4.60038 4.61776 4.68238 4.74434 4.75903 4.79771 4.93790 4.96798 4.99235 5.07750 5.17960 5.20291 5.29880 5.45691 5.49946 5.52895 5.90736 6.04974 6.06867 6.40565 6.45872 6.59920 6.88258 7.13350 7.39913 7.96375 8.76539 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.013393 B = 0.002222 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.160111 B =12600.193126 C =14019.157450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.170 4.170 3 C -0.033 4.033 4 O -0.181 6.181 5 C 0.041 3.959 6 C -0.083 4.083 7 C -0.259 4.259 8 C 0.599 3.401 9 O -0.575 6.575 10 N -0.701 5.701 11 C 0.148 3.852 12 H 0.076 0.924 13 C -0.158 4.158 14 C -0.115 4.115 15 C 0.063 3.937 16 N -0.687 5.687 17 C 0.062 3.938 18 C 0.448 3.552 19 O -0.614 6.614 20 N -0.591 5.591 21 C -0.329 4.329 22 H 0.055 0.945 23 C -0.016 4.016 24 N -0.934 5.934 25 Si 0.965 3.035 26 H -0.256 1.256 27 H -0.276 1.276 28 H -0.231 1.231 29 H 0.081 0.919 30 H 0.049 0.951 31 H 0.090 0.910 32 H 0.243 0.757 33 H 0.093 0.907 34 H 0.101 0.899 35 H 0.091 0.909 36 H 0.411 0.589 37 H 0.078 0.922 38 H 0.068 0.932 39 H 0.043 0.957 40 H 0.080 0.920 41 H 0.088 0.912 42 H 0.072 0.928 43 H 0.042 0.958 44 H 0.346 0.654 45 H 0.110 0.890 46 H 0.079 0.921 47 H 0.390 0.610 48 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.350 21.368 -21.014 32.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.171 4.171 3 C -0.098 4.098 4 O -0.077 6.077 5 C -0.011 4.011 6 C -0.139 4.139 7 C -0.263 4.263 8 C 0.386 3.614 9 O -0.455 6.455 10 N -0.352 5.352 11 C 0.043 3.957 12 H 0.094 0.906 13 C -0.216 4.216 14 C -0.153 4.153 15 C -0.066 4.066 16 N -0.319 5.319 17 C -0.070 4.070 18 C 0.236 3.764 19 O -0.499 6.499 20 N -0.233 5.233 21 C -0.458 4.458 22 H 0.073 0.927 23 C -0.215 4.215 24 N -0.575 5.575 25 Si 0.785 3.215 26 H -0.180 1.180 27 H -0.201 1.201 28 H -0.154 1.154 29 H 0.100 0.900 30 H 0.068 0.932 31 H 0.108 0.892 32 H 0.259 0.741 33 H 0.111 0.889 34 H 0.119 0.881 35 H 0.110 0.890 36 H 0.247 0.753 37 H 0.097 0.903 38 H 0.087 0.913 39 H 0.062 0.938 40 H 0.098 0.902 41 H 0.107 0.893 42 H 0.091 0.909 43 H 0.060 0.940 44 H 0.165 0.835 45 H 0.128 0.872 46 H 0.096 0.904 47 H 0.225 0.775 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -13.697 20.130 -21.341 32.377 hybrid contribution 0.922 0.836 0.537 1.355 sum -12.776 20.966 -20.804 32.181 Atomic orbital electron populations 1.20210 0.87532 1.03088 1.03076 1.21648 0.97768 0.90377 1.07336 1.24359 0.78685 1.00860 1.05882 1.83750 1.30566 1.21768 1.71624 1.22929 0.96502 0.81114 1.00567 1.20560 0.90810 0.97666 1.04879 1.21145 0.94266 0.93881 1.17047 1.17420 0.75471 0.84898 0.83625 1.90784 1.52870 1.69254 1.32611 1.46085 1.68625 1.12247 1.08285 1.20957 0.95677 0.80423 0.98639 0.90557 1.22112 0.94422 1.03230 1.01835 1.21776 0.94702 1.02483 0.96346 1.22017 0.95812 0.97141 0.91598 1.60048 1.06363 1.60009 1.05522 1.21622 0.90358 1.00525 0.94536 1.21014 0.82032 0.83603 0.89773 1.90543 1.51096 1.54301 1.53934 1.42040 1.06821 1.55029 1.19395 1.19005 0.93222 1.36461 0.97103 0.92671 1.26137 0.99692 0.96874 0.98788 1.69808 1.18829 1.43846 1.25016 0.85360 0.77530 0.79222 0.79387 1.17996 1.20139 1.15447 0.89991 0.93207 0.89155 0.74071 0.88858 0.88062 0.89039 0.75257 0.90349 0.91255 0.93766 0.90157 0.89317 0.90939 0.93963 0.83530 0.87198 0.90374 0.77460 0.91152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.96 10.38 71.24 0.74 -0.22 16 2 C -0.17 -2.66 6.38 -18.48 -0.12 -2.78 16 3 C -0.03 -0.40 11.96 66.89 0.80 0.40 16 4 O -0.18 -2.94 10.52 4.44 0.05 -2.90 16 5 C 0.04 0.70 7.37 25.26 0.19 0.89 16 6 C -0.08 -1.02 10.24 71.23 0.73 -0.29 16 7 C -0.26 -5.01 6.07 -18.99 -0.12 -5.12 16 8 C 0.60 12.91 7.22 86.65 0.63 13.54 16 9 O -0.58 -17.06 16.77 -4.06 -0.07 -17.13 16 10 N -0.70 -11.08 4.53 -445.86 -2.02 -13.10 16 11 C 0.15 2.37 2.57 44.99 0.12 2.48 16 12 H 0.08 1.51 7.58 -2.39 -0.02 1.49 16 13 C -0.16 -2.36 9.48 71.98 0.68 -1.68 16 14 C -0.11 -1.79 5.01 30.59 0.15 -1.63 16 15 C 0.06 1.17 5.57 86.30 0.48 1.65 16 16 N -0.69 -18.63 6.13 -517.93 -3.17 -21.80 16 17 C 0.06 1.80 6.17 85.56 0.53 2.33 16 18 C 0.45 19.82 7.82 87.66 0.69 20.51 16 19 O -0.61 -33.62 15.78 -3.07 -0.05 -33.67 16 20 N -0.59 -27.48 5.09 -306.98 -1.56 -29.04 16 21 C -0.33 -19.14 10.16 84.04 0.85 -18.29 16 22 H 0.06 3.84 7.39 -2.91 -0.02 3.81 16 23 C -0.02 -0.90 5.50 84.93 0.47 -0.43 16 24 N -0.93 -56.12 13.96 21.66 0.30 -55.82 16 25 Si 0.97 38.27 27.74 68.60 1.90 40.17 16 26 H -0.26 -9.52 7.11 99.48 0.71 -8.81 16 27 H -0.28 -10.94 7.11 99.48 0.71 -10.24 16 28 H -0.23 -7.69 6.52 99.48 0.65 -7.04 16 29 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.05 0.76 8.14 -2.39 -0.02 0.75 16 31 H 0.09 0.67 8.14 -2.38 -0.02 0.65 16 32 H 0.24 0.84 8.06 -2.91 -0.02 0.82 16 33 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.09 1.08 7.93 -2.39 -0.02 1.06 16 36 H 0.41 5.00 8.59 -92.70 -0.80 4.20 16 37 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.04 0.81 8.14 -2.38 -0.02 0.80 16 40 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.04 0.66 7.75 -2.39 -0.02 0.65 16 44 H 0.35 9.85 8.43 -89.69 -0.76 9.10 16 45 H 0.11 2.77 8.14 -2.39 -0.02 2.75 16 46 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 47 H 0.39 14.88 5.76 -92.71 -0.53 14.35 16 48 H 0.28 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -83.87 408.79 1.05 -82.82 By element: Atomic # 1 Polarization: 40.27 SS G_CDS: -1.15 Total: 39.13 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: 6.81 Total: 11.35 kcal Atomic # 7 Polarization: -113.32 SS G_CDS: -6.45 Total: -119.77 kcal Atomic # 8 Polarization: -53.63 SS G_CDS: -0.07 Total: -53.70 kcal Atomic # 14 Polarization: 38.27 SS G_CDS: 1.90 Total: 40.17 kcal Total: -83.87 1.05 -82.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482828324.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.723 kcal (2) G-P(sol) polarization free energy of solvation -83.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds