Wall clock time and date at job start Tue Mar 31 2020 20:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34173 * 127.02718 * 2 1 4 4 O 1.34216 * 109.12708 * 180.02562 * 3 2 1 5 5 C 1.33646 * 110.90761 * 0.02562 * 4 3 2 6 6 C 1.50705 * 125.80241 * 179.97438 * 5 4 3 7 7 C 1.36415 * 108.39797 * 359.97438 * 5 4 3 8 8 C 1.47382 * 127.19393 * 179.73694 * 7 5 4 9 9 O 1.21619 * 120.00008 * 90.02284 * 8 7 5 10 10 N 1.34775 * 120.00094 * 270.02936 * 8 7 5 11 11 C 1.46497 * 119.99844 * 179.97438 * 10 8 7 12 12 H 1.08997 * 109.47471 * 324.99855 * 11 10 8 13 13 C 1.53005 * 109.47504 * 84.99912 * 11 10 8 14 14 C 1.53004 * 109.46936 * 204.99560 * 11 10 8 15 15 C 1.52993 * 109.46983 * 65.00328 * 14 11 10 16 16 N 1.46903 * 109.47042 * 180.02562 * 15 14 11 17 17 C 1.46906 * 110.99832 * 179.97438 * 16 15 14 18 18 C 1.50703 * 109.46821 * 179.97438 * 17 16 15 19 19 O 1.21284 * 119.99985 * 0.02562 * 18 17 16 20 20 N 1.34775 * 119.99866 * 179.97438 * 18 17 16 21 21 C 1.37099 * 120.00020 * 180.02562 * 20 18 17 22 22 H 1.07995 * 120.00047 * 0.02562 * 21 20 18 23 23 C 1.38952 * 119.99820 * 180.02562 * 21 20 18 24 24 N 1.31409 * 120.00031 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99938 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47105 * 90.00062 * 25 23 21 27 27 H 1.48497 * 109.47505 * 210.00214 * 25 23 21 28 28 H 1.48506 * 109.47110 * 330.00282 * 25 23 21 29 29 H 1.09000 * 109.46952 * 269.96923 * 1 2 3 30 30 H 1.08995 * 109.47171 * 29.96744 * 1 2 3 31 31 H 1.08999 * 109.47759 * 149.97335 * 1 2 3 32 32 H 1.08002 * 125.43114 * 0.02832 * 3 2 1 33 33 H 1.08991 * 109.47068 * 270.00147 * 6 5 4 34 34 H 1.09000 * 109.46685 * 30.00369 * 6 5 4 35 35 H 1.08999 * 109.46727 * 149.99408 * 6 5 4 36 36 H 0.96997 * 120.00100 * 359.97438 * 10 8 7 37 37 H 1.08994 * 109.47589 * 180.02562 * 13 11 10 38 38 H 1.09005 * 109.46831 * 300.00038 * 13 11 10 39 39 H 1.09003 * 109.46856 * 59.99086 * 13 11 10 40 40 H 1.09004 * 109.47111 * 184.99737 * 14 11 10 41 41 H 1.08994 * 109.47053 * 304.99821 * 14 11 10 42 42 H 1.09003 * 109.47454 * 299.99700 * 15 14 11 43 43 H 1.09002 * 109.47469 * 59.99551 * 15 14 11 44 44 H 1.00899 * 110.99870 * 303.94822 * 16 15 14 45 45 H 1.08998 * 109.46845 * 299.99543 * 17 16 15 46 46 H 1.09004 * 109.47221 * 59.99727 * 17 16 15 47 47 H 0.96999 * 120.00032 * 0.02562 * 20 18 17 48 48 H 0.97003 * 119.99996 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3150 1.0712 0.0000 4 8 3.5922 0.6586 -0.0006 5 6 3.6623 -0.6760 -0.0015 6 6 4.9292 -1.4923 -0.0029 7 6 2.3923 -1.1738 -0.0010 8 6 1.9912 -2.5921 -0.0071 9 8 1.8278 -3.1823 1.0437 10 7 1.8057 -3.2349 -1.1770 11 6 1.4077 -4.6447 -1.1830 12 1 1.8779 -5.1587 -0.3447 13 6 -0.1136 -4.7458 -1.0546 14 6 1.8530 -5.2948 -2.4945 15 6 3.3813 -5.3055 -2.5652 16 7 3.8088 -5.9291 -3.8247 17 6 5.2740 -5.9563 -3.9278 18 6 5.6740 -6.6022 -5.2294 19 8 4.8224 -7.0001 -5.9958 20 7 6.9781 -6.7366 -5.5421 21 6 7.3420 -7.3236 -6.7264 22 1 6.5837 -7.6780 -7.4089 23 6 8.6865 -7.4627 -7.0486 24 7 9.6091 -7.0320 -6.2179 25 14 9.1824 -8.2632 -8.6618 26 1 9.2929 -7.2239 -9.7167 27 1 10.4930 -8.9412 -8.4958 28 1 8.1553 -9.2609 -9.0556 29 1 -0.3633 -0.0006 1.0277 30 1 -0.3633 0.8902 -0.5133 31 1 -0.3634 -0.8897 -0.5142 32 1 1.9895 2.1010 0.0004 33 1 5.2339 -1.6883 -1.0308 34 1 5.7169 -0.9412 0.5108 35 1 4.7528 -2.4374 0.5105 36 1 1.9358 -2.7641 -2.0150 37 1 -0.4098 -5.7948 -1.0586 38 1 -0.4309 -4.2826 -0.1202 39 1 -0.5839 -4.2318 -1.8929 40 1 1.4802 -6.3182 -2.5377 41 1 1.4543 -4.7271 -3.3351 42 1 3.7542 -4.2821 -2.5220 43 1 3.7800 -5.8732 -1.7245 44 1 3.4222 -6.8563 -3.9186 45 1 5.6596 -4.9374 -3.8938 46 1 5.6862 -6.5287 -3.0968 47 1 7.6591 -6.4180 -4.9293 48 1 10.5477 -7.1287 -6.4430 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482828325.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:58 Heat of formation + Delta-G solvation = -75.049307 kcal Electronic energy + Delta-G solvation = -28539.143118 eV Core-core repulsion = 24402.123524 eV Total energy + Delta-G solvation = -4137.019595 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.85908 -39.86995 -38.32786 -36.91842 -34.98426 -34.27754 -33.83396 -32.91717 -31.61388 -31.20663 -29.30377 -28.41998 -26.82409 -26.24504 -24.32323 -23.70265 -22.18171 -21.04454 -20.42815 -20.02245 -19.24256 -18.07161 -17.86657 -16.89309 -16.43358 -16.12258 -16.03629 -15.54896 -15.22345 -14.66641 -14.46477 -14.35604 -14.10540 -13.85194 -13.74107 -13.65844 -13.61480 -13.45645 -13.22895 -13.13517 -13.00683 -12.71544 -12.68183 -12.28987 -12.27098 -11.71572 -11.65446 -11.51539 -11.28885 -11.26065 -11.05385 -10.93671 -10.40397 -10.27531 -10.22884 -9.73181 -9.52165 -9.32722 -8.79451 -8.48402 -8.08397 -7.97236 -6.42893 -3.83741 1.31597 1.89629 2.30357 2.52853 3.04773 3.17082 3.25766 3.31548 3.89358 4.02444 4.13301 4.24144 4.45143 4.59999 4.74783 4.80301 4.85101 4.94268 4.95151 5.10646 5.13037 5.22829 5.24899 5.26570 5.29932 5.33830 5.36824 5.48099 5.50008 5.55499 5.58521 5.65690 5.77920 5.82979 5.90143 5.92841 5.97642 6.04810 6.07350 6.25259 6.29674 6.74884 7.18637 7.26421 7.54125 7.63557 7.97910 8.05151 8.60000 9.16693 9.53051 10.04431 10.74845 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.014724 B = 0.002048 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.141591 B =13667.896797 C =14926.860617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.149 4.149 3 C -0.040 4.040 4 O -0.172 6.172 5 C 0.050 3.950 6 C -0.084 4.084 7 C -0.234 4.234 8 C 0.596 3.404 9 O -0.534 6.534 10 N -0.714 5.714 11 C 0.142 3.858 12 H 0.089 0.911 13 C -0.162 4.162 14 C -0.126 4.126 15 C 0.059 3.941 16 N -0.670 5.670 17 C 0.051 3.949 18 C 0.440 3.560 19 O -0.584 6.584 20 N -0.564 5.564 21 C -0.299 4.299 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.930 3.070 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.270 1.270 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.207 0.793 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.404 0.596 37 H 0.067 0.933 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.069 0.931 43 H 0.027 0.973 44 H 0.349 0.651 45 H 0.085 0.915 46 H 0.043 0.957 47 H 0.392 0.608 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.055 14.693 15.076 25.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.151 4.151 3 C -0.106 4.106 4 O -0.068 6.068 5 C -0.002 4.002 6 C -0.140 4.140 7 C -0.239 4.239 8 C 0.381 3.619 9 O -0.410 6.410 10 N -0.365 5.365 11 C 0.038 3.962 12 H 0.107 0.893 13 C -0.221 4.221 14 C -0.164 4.164 15 C -0.071 4.071 16 N -0.302 5.302 17 C -0.082 4.082 18 C 0.226 3.774 19 O -0.468 6.468 20 N -0.200 5.200 21 C -0.429 4.429 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.543 5.543 25 Si 0.757 3.243 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.223 0.777 33 H 0.111 0.889 34 H 0.104 0.896 35 H 0.110 0.890 36 H 0.239 0.761 37 H 0.086 0.914 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.099 0.901 41 H 0.099 0.901 42 H 0.088 0.912 43 H 0.045 0.955 44 H 0.168 0.832 45 H 0.103 0.897 46 H 0.061 0.939 47 H 0.225 0.775 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.352 14.717 14.923 25.981 hybrid contribution 0.905 -0.558 -0.148 1.073 sum -14.448 14.159 14.775 25.050 Atomic orbital electron populations 1.20181 0.88646 1.02810 1.02521 1.21323 0.96764 0.90548 1.06467 1.23625 0.79628 0.99551 1.07820 1.83736 1.29576 1.21923 1.71609 1.22590 0.96081 0.80790 1.00768 1.20497 0.91136 0.97884 1.04521 1.21001 0.93203 0.93970 1.15697 1.17276 0.76177 0.84628 0.83789 1.90806 1.50837 1.67714 1.31683 1.46157 1.69613 1.12298 1.08467 1.21022 0.95242 0.80900 0.99073 0.89297 1.22161 0.95100 1.02503 1.02289 1.21878 0.95973 1.02042 0.96482 1.21962 0.94656 0.99885 0.90565 1.60084 1.08397 1.27955 1.33755 1.21665 0.88665 1.01172 0.96678 1.19812 0.83509 0.85413 0.88682 1.90518 1.50002 1.54077 1.52173 1.41869 1.05242 1.53189 1.19748 1.19703 0.92141 1.34773 0.96274 0.87919 1.25268 0.95420 0.97844 0.99449 1.69611 1.01113 1.46996 1.36600 0.85852 0.77889 0.79228 0.81288 1.20378 1.20937 1.19420 0.91060 0.91100 0.91468 0.77686 0.88937 0.89634 0.89003 0.76149 0.91374 0.92187 0.92263 0.90089 0.90142 0.91230 0.95497 0.83169 0.89715 0.93917 0.77466 0.91865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.59 10.38 36.01 0.37 -0.22 16 2 C -0.15 -1.35 6.38 -102.49 -0.65 -2.01 16 3 C -0.04 -0.31 11.96 29.30 0.35 0.04 16 4 O -0.17 -1.66 10.52 7.66 0.08 -1.58 16 5 C 0.05 0.49 7.37 -34.96 -0.26 0.23 16 6 C -0.08 -0.65 10.24 36.01 0.37 -0.28 16 7 C -0.23 -2.51 6.07 -103.27 -0.63 -3.14 16 8 C 0.60 6.91 7.22 -12.54 -0.09 6.82 16 9 O -0.53 -8.07 16.77 5.26 0.09 -7.98 16 10 N -0.71 -6.61 4.53 -54.89 -0.25 -6.86 16 11 C 0.14 1.30 2.57 -67.93 -0.17 1.13 16 12 H 0.09 0.95 7.58 -51.93 -0.39 0.56 16 13 C -0.16 -1.35 9.48 37.16 0.35 -1.00 16 14 C -0.13 -1.17 5.01 -26.73 -0.13 -1.31 16 15 C 0.06 0.68 5.57 -3.83 -0.02 0.66 16 16 N -0.67 -10.39 6.13 -115.05 -0.70 -11.09 16 17 C 0.05 0.88 6.17 -4.97 -0.03 0.85 16 18 C 0.44 10.33 7.82 -10.98 -0.09 10.25 16 19 O -0.58 -15.77 15.78 5.55 0.09 -15.68 16 20 N -0.56 -14.24 5.29 -10.96 -0.06 -14.29 16 21 C -0.30 -8.33 9.68 -14.93 -0.14 -8.48 16 22 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.44 13.05 55.50 0.72 -23.72 16 25 Si 0.93 20.98 29.55 -169.99 -5.02 15.95 16 26 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 27 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 28 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.21 0.81 8.06 -52.49 -0.42 0.39 16 33 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.09 0.75 7.94 -51.93 -0.41 0.34 16 36 H 0.40 3.23 8.59 -40.82 -0.35 2.88 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.07 0.77 7.75 -51.93 -0.40 0.37 16 43 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.35 5.60 8.43 -39.29 -0.33 5.27 16 45 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 46 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 47 H 0.39 9.44 7.90 -40.82 -0.32 9.12 16 48 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 411.92 15.07 6.21 6.21 Total: -1.00 -34.44 411.92 -7.36 -41.80 By element: Atomic # 1 Polarization: 20.86 SS G_CDS: -7.64 Total: 13.21 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: -0.87 Total: 4.04 kcal Atomic # 7 Polarization: -55.67 SS G_CDS: -0.29 Total: -55.96 kcal Atomic # 8 Polarization: -25.51 SS G_CDS: 0.26 Total: -25.25 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -34.44 -7.36 -41.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482828325.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.248 kcal (2) G-P(sol) polarization free energy of solvation -34.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds