Wall clock time and date at job start Tue Mar 31 2020 20:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34173 * 127.02718 * 2 1 4 4 O 1.34216 * 109.12708 * 180.02562 * 3 2 1 5 5 C 1.33646 * 110.90761 * 0.02562 * 4 3 2 6 6 C 1.50705 * 125.80241 * 179.97438 * 5 4 3 7 7 C 1.36415 * 108.39797 * 359.97438 * 5 4 3 8 8 C 1.47382 * 127.19393 * 179.73694 * 7 5 4 9 9 O 1.21619 * 120.00008 * 90.02284 * 8 7 5 10 10 N 1.34775 * 120.00094 * 270.02936 * 8 7 5 11 11 C 1.46497 * 119.99844 * 179.97438 * 10 8 7 12 12 H 1.08997 * 109.47471 * 324.99855 * 11 10 8 13 13 C 1.53005 * 109.47504 * 84.99912 * 11 10 8 14 14 C 1.53004 * 109.46936 * 204.99560 * 11 10 8 15 15 C 1.52993 * 109.46983 * 65.00328 * 14 11 10 16 16 N 1.46903 * 109.47042 * 180.02562 * 15 14 11 17 17 C 1.46906 * 110.99832 * 179.97438 * 16 15 14 18 18 C 1.50703 * 109.46821 * 179.97438 * 17 16 15 19 19 O 1.21284 * 119.99985 * 0.02562 * 18 17 16 20 20 N 1.34775 * 119.99866 * 179.97438 * 18 17 16 21 21 C 1.37099 * 120.00020 * 180.02562 * 20 18 17 22 22 H 1.07995 * 120.00047 * 0.02562 * 21 20 18 23 23 C 1.38952 * 119.99820 * 180.02562 * 21 20 18 24 24 N 1.31409 * 120.00031 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99938 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47105 * 90.00062 * 25 23 21 27 27 H 1.48497 * 109.47505 * 210.00214 * 25 23 21 28 28 H 1.48506 * 109.47110 * 330.00282 * 25 23 21 29 29 H 1.09000 * 109.46952 * 269.96923 * 1 2 3 30 30 H 1.08995 * 109.47171 * 29.96744 * 1 2 3 31 31 H 1.08999 * 109.47759 * 149.97335 * 1 2 3 32 32 H 1.08002 * 125.43114 * 0.02832 * 3 2 1 33 33 H 1.08991 * 109.47068 * 270.00147 * 6 5 4 34 34 H 1.09000 * 109.46685 * 30.00369 * 6 5 4 35 35 H 1.08999 * 109.46727 * 149.99408 * 6 5 4 36 36 H 0.96997 * 120.00100 * 359.97438 * 10 8 7 37 37 H 1.08994 * 109.47589 * 180.02562 * 13 11 10 38 38 H 1.09005 * 109.46831 * 300.00038 * 13 11 10 39 39 H 1.09003 * 109.46856 * 59.99086 * 13 11 10 40 40 H 1.09004 * 109.47111 * 184.99737 * 14 11 10 41 41 H 1.08994 * 109.47053 * 304.99821 * 14 11 10 42 42 H 1.09003 * 109.47454 * 299.99700 * 15 14 11 43 43 H 1.09002 * 109.47469 * 59.99551 * 15 14 11 44 44 H 1.00899 * 110.99870 * 303.94822 * 16 15 14 45 45 H 1.08998 * 109.46845 * 299.99543 * 17 16 15 46 46 H 1.09004 * 109.47221 * 59.99727 * 17 16 15 47 47 H 0.96999 * 120.00032 * 0.02562 * 20 18 17 48 48 H 0.97003 * 119.99996 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3150 1.0712 0.0000 4 8 3.5922 0.6586 -0.0006 5 6 3.6623 -0.6760 -0.0015 6 6 4.9292 -1.4923 -0.0029 7 6 2.3923 -1.1738 -0.0010 8 6 1.9912 -2.5921 -0.0071 9 8 1.8278 -3.1823 1.0437 10 7 1.8057 -3.2349 -1.1770 11 6 1.4077 -4.6447 -1.1830 12 1 1.8779 -5.1587 -0.3447 13 6 -0.1136 -4.7458 -1.0546 14 6 1.8530 -5.2948 -2.4945 15 6 3.3813 -5.3055 -2.5652 16 7 3.8088 -5.9291 -3.8247 17 6 5.2740 -5.9563 -3.9278 18 6 5.6740 -6.6022 -5.2294 19 8 4.8224 -7.0001 -5.9958 20 7 6.9781 -6.7366 -5.5421 21 6 7.3420 -7.3236 -6.7264 22 1 6.5837 -7.6780 -7.4089 23 6 8.6865 -7.4627 -7.0486 24 7 9.6091 -7.0320 -6.2179 25 14 9.1824 -8.2632 -8.6618 26 1 9.2929 -7.2239 -9.7167 27 1 10.4930 -8.9412 -8.4958 28 1 8.1553 -9.2609 -9.0556 29 1 -0.3633 -0.0006 1.0277 30 1 -0.3633 0.8902 -0.5133 31 1 -0.3634 -0.8897 -0.5142 32 1 1.9895 2.1010 0.0004 33 1 5.2339 -1.6883 -1.0308 34 1 5.7169 -0.9412 0.5108 35 1 4.7528 -2.4374 0.5105 36 1 1.9358 -2.7641 -2.0150 37 1 -0.4098 -5.7948 -1.0586 38 1 -0.4309 -4.2826 -0.1202 39 1 -0.5839 -4.2318 -1.8929 40 1 1.4802 -6.3182 -2.5377 41 1 1.4543 -4.7271 -3.3351 42 1 3.7542 -4.2821 -2.5220 43 1 3.7800 -5.8732 -1.7245 44 1 3.4222 -6.8563 -3.9186 45 1 5.6596 -4.9374 -3.8938 46 1 5.6862 -6.5287 -3.0968 47 1 7.6591 -6.4180 -4.9293 48 1 10.5477 -7.1287 -6.4430 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482828325.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:57 Heat of formation + Delta-G solvation = -100.402917 kcal Electronic energy + Delta-G solvation = -28540.242533 eV Core-core repulsion = 24402.123524 eV Total energy + Delta-G solvation = -4138.119010 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.53767 -40.76051 -40.14179 -37.95043 -36.28749 -35.69041 -34.95310 -33.59809 -33.27590 -32.43775 -30.34190 -29.04067 -27.79666 -27.41866 -25.83642 -24.67101 -23.17917 -21.87081 -21.22509 -21.03619 -20.67071 -19.90507 -18.77021 -17.85193 -17.68223 -17.18729 -16.92667 -16.79541 -16.44453 -16.06074 -15.92783 -15.41191 -15.28288 -15.11038 -14.78504 -14.66515 -14.31504 -14.23926 -14.15981 -13.85893 -13.78446 -13.62812 -13.55085 -13.48937 -13.29535 -13.22199 -12.94912 -12.81034 -12.42349 -12.31260 -12.22767 -12.13407 -12.11281 -11.78799 -11.50538 -11.19592 -10.45197 -10.35736 -10.17143 -10.01678 -9.44367 -9.34077 -8.46661 -5.95409 0.62165 1.23781 1.38384 1.42328 1.42559 1.54949 1.88289 2.05055 2.28305 2.29251 2.88539 3.20663 3.48252 3.52763 3.73491 3.93454 3.94476 4.07332 4.09813 4.20267 4.32944 4.35851 4.43068 4.48285 4.53321 4.56034 4.61395 4.62243 4.68150 4.74609 4.75539 4.81700 4.89343 4.97388 5.00087 5.06305 5.19120 5.20363 5.29911 5.41169 5.46727 5.49941 5.88472 6.07804 6.09772 6.39906 6.46440 6.59960 7.12560 7.13597 7.56177 8.11258 8.70696 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.014724 B = 0.002048 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.141591 B =13667.896797 C =14926.860617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.169 4.169 3 C -0.032 4.032 4 O -0.181 6.181 5 C 0.041 3.959 6 C -0.084 4.084 7 C -0.259 4.259 8 C 0.600 3.400 9 O -0.576 6.576 10 N -0.701 5.701 11 C 0.147 3.853 12 H 0.075 0.925 13 C -0.157 4.157 14 C -0.114 4.114 15 C 0.062 3.938 16 N -0.680 5.680 17 C 0.065 3.935 18 C 0.437 3.563 19 O -0.623 6.623 20 N -0.573 5.573 21 C -0.334 4.334 22 H 0.079 0.921 23 C -0.014 4.014 24 N -0.920 5.920 25 Si 0.993 3.007 26 H -0.271 1.271 27 H -0.271 1.271 28 H -0.273 1.273 29 H 0.069 0.931 30 H 0.095 0.905 31 H 0.058 0.942 32 H 0.244 0.756 33 H 0.102 0.898 34 H 0.098 0.902 35 H 0.083 0.917 36 H 0.412 0.588 37 H 0.079 0.921 38 H 0.044 0.956 39 H 0.069 0.931 40 H 0.088 0.912 41 H 0.083 0.917 42 H 0.076 0.924 43 H 0.032 0.968 44 H 0.345 0.655 45 H 0.104 0.896 46 H 0.064 0.936 47 H 0.396 0.604 48 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.149 15.795 14.934 26.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.171 4.171 3 C -0.098 4.098 4 O -0.077 6.077 5 C -0.011 4.011 6 C -0.140 4.140 7 C -0.263 4.263 8 C 0.386 3.614 9 O -0.456 6.456 10 N -0.352 5.352 11 C 0.042 3.958 12 H 0.093 0.907 13 C -0.215 4.215 14 C -0.152 4.152 15 C -0.067 4.067 16 N -0.313 5.313 17 C -0.068 4.068 18 C 0.225 3.775 19 O -0.509 6.509 20 N -0.211 5.211 21 C -0.463 4.463 22 H 0.097 0.903 23 C -0.213 4.213 24 N -0.561 5.561 25 Si 0.817 3.183 26 H -0.196 1.196 27 H -0.196 1.196 28 H -0.197 1.197 29 H 0.087 0.913 30 H 0.113 0.887 31 H 0.077 0.923 32 H 0.260 0.740 33 H 0.121 0.879 34 H 0.116 0.884 35 H 0.102 0.898 36 H 0.248 0.752 37 H 0.098 0.902 38 H 0.063 0.937 39 H 0.088 0.912 40 H 0.107 0.893 41 H 0.101 0.899 42 H 0.094 0.906 43 H 0.050 0.950 44 H 0.163 0.837 45 H 0.122 0.878 46 H 0.081 0.919 47 H 0.230 0.770 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -15.442 15.842 14.779 26.606 hybrid contribution 0.887 -0.862 -0.076 1.239 sum -14.556 14.980 14.704 25.543 Atomic orbital electron populations 1.20209 0.87464 1.03587 1.02619 1.21647 0.97797 0.90314 1.07353 1.24371 0.78666 1.00885 1.05845 1.83748 1.30609 1.21713 1.71628 1.22906 0.96484 0.81134 1.00603 1.20555 0.90792 0.97412 1.05214 1.21145 0.94265 0.93907 1.17020 1.17425 0.75432 0.84972 0.83567 1.90779 1.53005 1.68703 1.33148 1.46095 1.68548 1.12308 1.08276 1.20970 0.95815 0.80572 0.98400 0.90709 1.22110 0.94235 1.03319 1.01856 1.21774 0.94423 1.02601 0.96413 1.22025 0.96010 0.99813 0.88864 1.60098 1.07096 1.27910 1.36172 1.21532 0.90140 1.01706 0.93408 1.20882 0.82437 0.84038 0.90148 1.90486 1.50882 1.55478 1.54089 1.41943 1.06169 1.53599 1.19361 1.19666 0.92380 1.36794 0.97475 0.90291 1.26047 0.94899 0.97835 1.02556 1.69670 1.01508 1.47098 1.37839 0.84928 0.77689 0.78333 0.77398 1.19617 1.19581 1.19746 0.91272 0.88667 0.92338 0.73985 0.87925 0.88358 0.89812 0.75199 0.90178 0.93721 0.91241 0.89309 0.89853 0.90563 0.95020 0.83667 0.87784 0.91864 0.76971 0.91294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.05 10.38 71.24 0.74 -0.31 16 2 C -0.17 -2.89 6.38 -18.49 -0.12 -3.01 16 3 C -0.03 -0.44 11.96 66.89 0.80 0.36 16 4 O -0.18 -3.25 10.52 4.51 0.05 -3.20 16 5 C 0.04 0.78 7.37 25.26 0.19 0.97 16 6 C -0.08 -1.24 10.24 71.24 0.73 -0.51 16 7 C -0.26 -5.46 6.07 -18.99 -0.12 -5.58 16 8 C 0.60 13.95 7.22 86.65 0.63 14.57 16 9 O -0.58 -17.89 16.77 -4.09 -0.07 -17.96 16 10 N -0.70 -12.51 4.53 -445.83 -2.02 -14.53 16 11 C 0.15 2.56 2.57 45.00 0.12 2.68 16 12 H 0.07 1.57 7.58 -2.39 -0.02 1.55 16 13 C -0.16 -2.46 9.48 71.98 0.68 -1.78 16 14 C -0.11 -1.94 5.01 30.59 0.15 -1.79 16 15 C 0.06 1.31 5.57 86.30 0.48 1.79 16 16 N -0.68 -20.16 6.13 -517.91 -3.17 -23.33 16 17 C 0.06 2.15 6.17 85.56 0.53 2.68 16 18 C 0.44 20.55 7.82 87.66 0.69 21.24 16 19 O -0.62 -34.15 15.78 -3.04 -0.05 -34.20 16 20 N -0.57 -29.21 5.29 -306.99 -1.62 -30.83 16 21 C -0.33 -18.86 9.68 84.04 0.81 -18.04 16 22 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 23 C -0.01 -0.72 5.50 84.93 0.47 -0.26 16 24 N -0.92 -49.37 13.05 21.66 0.28 -49.08 16 25 Si 0.99 42.66 29.55 68.60 2.03 44.69 16 26 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 27 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 28 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 29 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.24 1.13 8.06 -2.91 -0.02 1.10 16 33 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.08 1.36 7.94 -2.39 -0.02 1.35 16 36 H 0.41 6.11 8.59 -92.71 -0.80 5.31 16 37 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.04 0.85 8.14 -2.38 -0.02 0.83 16 39 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 41 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.08 1.53 7.75 -2.39 -0.02 1.51 16 43 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 44 H 0.34 10.74 8.43 -89.69 -0.76 9.99 16 45 H 0.10 3.09 8.14 -2.39 -0.02 3.07 16 46 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 47 H 0.40 19.13 7.90 -92.71 -0.73 18.40 16 48 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 Total: -1.00 -75.24 411.92 0.91 -74.32 By element: Atomic # 1 Polarization: 42.40 SS G_CDS: -1.29 Total: 41.11 kcal Atomic # 6 Polarization: 6.23 SS G_CDS: 6.77 Total: 13.01 kcal Atomic # 7 Polarization: -111.24 SS G_CDS: -6.53 Total: -117.77 kcal Atomic # 8 Polarization: -55.29 SS G_CDS: -0.07 Total: -55.36 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Total: -75.24 0.91 -74.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482828325.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.079 kcal (2) G-P(sol) polarization free energy of solvation -75.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds