Wall clock time and date at job start Tue Mar 31 2020 21:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.47106 * 119.99532 * 2 1 4 4 O 1.21617 * 119.99629 * 179.97438 * 3 2 1 5 5 N 1.34773 * 120.00040 * 0.02562 * 3 2 1 6 6 C 1.46506 * 119.99969 * 180.02562 * 5 3 2 7 7 C 1.52998 * 109.47237 * 179.72043 * 6 5 3 8 8 O 1.42900 * 112.93743 * 53.43253 * 7 6 5 9 9 C 1.53931 * 113.73582 * 281.72787 * 7 6 5 10 10 N 1.47961 * 86.18118 * 221.92388 * 9 7 6 11 11 C 1.46891 * 111.00283 * 137.58302 * 10 9 7 12 12 C 1.50703 * 109.47360 * 70.63891 * 11 10 9 13 13 O 1.21290 * 119.99451 * 359.97438 * 12 11 10 14 14 N 1.34771 * 120.00128 * 180.02562 * 12 11 10 15 15 C 1.37096 * 120.00079 * 179.97438 * 14 12 11 16 16 H 1.08001 * 120.00134 * 359.97438 * 15 14 12 17 17 C 1.38955 * 120.00022 * 180.02562 * 15 14 12 18 18 N 1.31406 * 120.00103 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99791 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47077 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.46760 * 119.99708 * 19 17 15 22 22 H 1.48493 * 109.47012 * 239.99934 * 19 17 15 23 23 C 1.47961 * 90.76198 * 24.68648 * 10 9 7 24 24 C 1.32986 * 120.00329 * 179.97438 * 2 1 3 25 25 C 1.51407 * 136.31548 * 179.62836 * 24 2 1 26 26 C 1.53385 * 87.51751 * 206.06276 * 25 24 2 27 27 C 1.51413 * 136.31796 * 0.02562 * 24 2 1 28 28 H 1.09000 * 109.46981 * 90.00080 * 1 2 3 29 29 H 1.09001 * 109.47106 * 209.99525 * 1 2 3 30 30 H 1.09000 * 109.47455 * 330.00264 * 1 2 3 31 31 H 0.97005 * 120.00161 * 359.72096 * 5 3 2 32 32 H 1.09001 * 109.46512 * 299.72412 * 6 5 3 33 33 H 1.08998 * 109.47174 * 59.71534 * 6 5 3 34 34 H 0.96706 * 114.00279 * 309.66632 * 8 7 6 35 35 H 1.09004 * 113.75688 * 336.23535 * 9 7 6 36 36 H 1.08994 * 113.76062 * 107.60287 * 9 7 6 37 37 H 1.09007 * 109.46943 * 190.63674 * 11 10 9 38 38 H 1.08995 * 109.47304 * 310.63522 * 11 10 9 39 39 H 0.97004 * 120.00256 * 359.97438 * 14 12 11 40 40 H 0.96997 * 120.00054 * 179.97438 * 18 17 15 41 41 H 1.09004 * 113.75871 * 220.99549 * 23 10 9 42 42 H 1.09000 * 113.85966 * 89.64858 * 23 10 9 43 43 H 1.08993 * 113.56307 * 320.64490 * 25 24 2 44 44 H 1.08998 * 113.55925 * 91.38375 * 25 24 2 45 45 H 1.09004 * 113.96422 * 220.29494 * 26 25 24 46 46 H 1.08996 * 113.59956 * 88.79878 * 26 25 24 47 47 H 1.09001 * 113.55355 * 268.61999 * 27 24 2 48 48 H 1.08995 * 113.55880 * 39.35111 * 27 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2424 1.2740 0.0000 4 8 3.4586 1.2741 0.0005 5 7 1.5685 2.4411 0.0005 6 6 2.3009 3.7100 0.0000 7 6 1.3067 4.8728 -0.0063 8 8 0.3452 4.7892 1.0475 9 6 0.6911 5.1543 -1.3888 10 7 0.8786 6.5871 -1.0709 11 6 1.3908 7.3220 -2.2351 12 6 0.3088 7.4270 -3.2788 13 8 -0.7816 6.9373 -3.0732 14 7 0.5531 8.0641 -4.4410 15 6 -0.4310 8.1592 -5.3907 16 1 -1.4020 7.7232 -5.2077 17 6 -0.1789 8.8156 -6.5892 18 7 1.0026 9.3457 -6.8121 19 14 -1.5198 8.9445 -7.8835 20 1 -2.7486 8.2713 -7.3918 21 1 -1.8133 10.3754 -8.1512 22 1 -1.0634 8.2900 -9.1358 23 6 1.9714 6.2557 -0.1301 24 6 2.1720 -1.1517 0.0005 25 6 3.6251 -1.5769 -0.0061 26 6 3.1710 -2.8819 -0.6720 27 6 1.8140 -2.6228 0.0007 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 0.5985 2.4411 -0.0032 32 1 2.9245 3.7698 0.8920 33 1 2.9307 3.7656 -0.8879 34 1 -0.0959 3.9308 1.1104 35 1 1.3026 4.8055 -2.2210 36 1 -0.3539 4.8562 -1.4732 37 1 1.6972 8.3219 -1.9275 38 1 2.2471 6.7917 -2.6516 39 1 1.4253 8.4554 -4.6056 40 1 1.1787 9.8036 -7.6489 41 1 1.9493 6.8377 0.7913 42 1 2.9582 6.2288 -0.5924 43 1 4.2567 -0.9603 -0.6454 44 1 4.0421 -1.7188 0.9910 45 1 3.6837 -3.7697 -0.3017 46 1 3.1401 -2.8287 -1.7602 47 1 1.7339 -3.0515 0.9997 48 1 0.9605 -2.8636 -0.6331 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484272978.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:02 Heat of formation + Delta-G solvation = -39.099234 kcal Electronic energy + Delta-G solvation = -28846.022954 eV Core-core repulsion = 24710.562272 eV Total energy + Delta-G solvation = -4135.460683 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.79588 -40.00393 -38.60730 -37.89834 -35.82748 -34.56220 -33.89374 -33.36058 -31.29712 -30.21457 -27.55762 -26.94609 -26.16591 -25.87901 -24.97575 -23.45451 -22.34539 -20.84121 -20.01564 -19.33821 -18.86171 -17.86584 -17.11164 -16.58440 -16.45448 -15.98847 -15.83893 -15.48226 -15.41154 -15.28290 -14.66667 -14.52660 -14.12016 -13.95388 -13.68966 -13.64236 -13.29351 -13.08879 -12.96737 -12.81535 -12.79386 -12.33088 -12.25752 -12.05652 -11.95513 -11.88342 -11.50480 -11.34881 -11.29962 -11.05003 -10.87517 -10.72479 -10.35475 -10.23991 -9.95781 -9.91754 -9.52640 -9.44106 -9.12512 -8.66746 -8.24430 -7.97662 -6.42951 -3.83750 1.03391 2.80227 3.01749 3.15223 3.25806 3.32953 3.67784 3.88174 3.96157 3.99092 4.11369 4.20914 4.27880 4.35146 4.53460 4.59239 4.71941 4.86064 4.90545 5.10252 5.17679 5.22555 5.24103 5.25600 5.27176 5.33672 5.43234 5.44941 5.48592 5.52148 5.63903 5.68687 5.69332 5.77800 5.84100 5.86144 5.92559 6.07482 6.13736 6.23941 6.31926 6.57809 7.12103 7.20035 7.42644 7.54136 7.97696 8.04526 8.59966 9.16731 9.52770 10.04335 10.74891 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.013761 B = 0.002148 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.251776 B =13030.242175 C =14045.929416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.169 4.169 3 C 0.560 3.440 4 O -0.538 6.538 5 N -0.726 5.726 6 C 0.102 3.898 7 C 0.087 3.913 8 O -0.521 6.521 9 C 0.000 4.000 10 N -0.440 5.440 11 C 0.007 3.993 12 C 0.444 3.556 13 O -0.579 6.579 14 N -0.564 5.564 15 C -0.298 4.298 16 H 0.103 0.897 17 C 0.021 3.979 18 N -0.901 5.901 19 Si 0.929 3.071 20 H -0.268 1.268 21 H -0.281 1.281 22 H -0.282 1.282 23 C 0.018 3.982 24 C -0.067 4.067 25 C -0.104 4.104 26 C -0.142 4.142 27 C -0.106 4.106 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.399 0.601 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.371 0.629 35 H 0.074 0.926 36 H 0.099 0.901 37 H 0.093 0.907 38 H 0.055 0.945 39 H 0.392 0.608 40 H 0.271 0.729 41 H 0.100 0.900 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.097 0.903 45 H 0.077 0.923 46 H 0.085 0.915 47 H 0.100 0.900 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.829 -20.904 15.125 26.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.172 4.172 3 C 0.349 3.651 4 O -0.417 6.417 5 N -0.380 5.380 6 C -0.022 4.022 7 C 0.045 3.955 8 O -0.325 6.325 9 C -0.130 4.130 10 N -0.162 5.162 11 C -0.125 4.125 12 C 0.229 3.771 13 O -0.463 6.463 14 N -0.201 5.201 15 C -0.428 4.428 16 H 0.121 0.879 17 C -0.180 4.180 18 N -0.543 5.543 19 Si 0.757 3.243 20 H -0.192 1.192 21 H -0.207 1.207 22 H -0.208 1.208 23 C -0.112 4.112 24 C -0.069 4.069 25 C -0.140 4.140 26 C -0.180 4.180 27 C -0.143 4.143 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.235 0.765 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.218 0.782 35 H 0.092 0.908 36 H 0.117 0.883 37 H 0.111 0.889 38 H 0.073 0.927 39 H 0.225 0.775 40 H 0.081 0.919 41 H 0.119 0.881 42 H 0.101 0.899 43 H 0.104 0.896 44 H 0.115 0.885 45 H 0.096 0.904 46 H 0.103 0.897 47 H 0.118 0.882 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.659 -20.059 15.392 25.709 hybrid contribution 0.030 -0.401 -1.430 1.485 sum 4.689 -20.459 13.962 25.209 Atomic orbital electron populations 1.20691 0.90307 1.02937 1.02773 1.20409 0.95920 0.91117 1.09755 1.18227 0.87168 0.83671 0.76063 1.90783 1.13494 1.87663 1.49735 1.45822 1.10374 1.05634 1.76171 1.22025 0.94885 0.81786 1.03542 1.23059 0.89437 0.94309 0.88715 1.86634 1.55917 1.38248 1.51748 1.24519 1.03365 0.90219 0.94848 1.68471 1.28514 1.09467 1.09775 1.22515 0.96682 1.00749 0.92569 1.19653 0.89237 0.84645 0.83551 1.90520 1.25064 1.51450 1.79234 1.41877 1.14967 1.49199 1.14080 1.19741 0.95005 1.33437 0.94576 0.87892 1.25271 0.97481 0.96723 0.98547 1.69616 1.21298 1.37132 1.26242 0.85799 0.80605 0.77978 0.79962 1.19229 1.20717 1.20764 1.24119 0.94779 0.92865 0.99397 1.23269 0.98194 0.93746 0.91689 1.22192 0.93964 0.95976 1.01896 1.22723 0.96566 0.98177 1.00513 1.22304 0.98683 0.91471 1.01821 0.90827 0.91056 0.91576 0.76544 0.90274 0.90111 0.78212 0.90828 0.88266 0.88896 0.92739 0.77487 0.91911 0.88127 0.89874 0.89580 0.88513 0.90387 0.89685 0.88188 0.90372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.68 9.57 36.01 0.34 -0.34 16 2 C -0.17 -1.54 6.00 -102.85 -0.62 -2.16 16 3 C 0.56 6.42 7.75 -12.66 -0.10 6.32 16 4 O -0.54 -7.94 15.15 5.26 0.08 -7.86 16 5 N -0.73 -6.94 5.28 -61.49 -0.32 -7.26 16 6 C 0.10 1.08 5.28 -4.04 -0.02 1.05 16 7 C 0.09 1.03 1.52 -89.69 -0.14 0.89 16 8 O -0.52 -6.19 13.50 -35.23 -0.48 -6.67 16 9 C 0.00 -0.01 6.16 -2.77 -0.02 -0.02 16 10 N -0.44 -7.43 5.95 -239.65 -1.43 -8.86 16 11 C 0.01 0.12 5.31 -4.98 -0.03 0.10 16 12 C 0.44 10.58 7.59 -10.99 -0.08 10.50 16 13 O -0.58 -15.77 15.12 5.55 0.08 -15.69 16 14 N -0.56 -14.41 5.29 -10.96 -0.06 -14.46 16 15 C -0.30 -8.35 9.68 -14.93 -0.14 -8.49 16 16 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 17 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 18 N -0.90 -24.63 13.05 55.50 0.72 -23.90 16 19 Si 0.93 21.12 29.55 -169.99 -5.02 16.10 16 20 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 22 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 23 C 0.02 0.22 7.37 -2.77 -0.02 0.20 16 24 C -0.07 -0.58 6.60 -100.48 -0.66 -1.24 16 25 C -0.10 -0.87 6.99 -27.55 -0.19 -1.07 16 26 C -0.14 -0.88 8.17 -26.20 -0.21 -1.09 16 27 C -0.11 -0.62 7.71 -27.41 -0.21 -0.83 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.37 7.91 -51.93 -0.41 -0.04 16 30 H 0.07 0.32 6.71 -51.93 -0.35 -0.02 16 31 H 0.40 2.92 5.41 -40.82 -0.22 2.70 16 32 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.08 0.91 8.04 -51.93 -0.42 0.49 16 34 H 0.37 2.92 7.61 45.56 0.35 3.27 16 35 H 0.07 1.10 7.67 -51.93 -0.40 0.71 16 36 H 0.10 1.65 8.09 -51.93 -0.42 1.23 16 37 H 0.09 1.53 8.14 -51.92 -0.42 1.11 16 38 H 0.05 0.86 7.69 -51.93 -0.40 0.46 16 39 H 0.39 9.56 7.90 -40.82 -0.32 9.24 16 40 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 41 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.08 0.88 7.75 -51.93 -0.40 0.48 16 43 H 0.09 0.90 7.49 -51.93 -0.39 0.51 16 44 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 47 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 396.42 15.07 5.97 5.97 Total: -1.00 -35.39 396.42 -9.34 -44.73 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: -6.70 Total: 13.62 kcal Atomic # 6 Polarization: 6.49 SS G_CDS: -2.20 Total: 4.29 kcal Atomic # 7 Polarization: -53.40 SS G_CDS: -1.08 Total: -54.49 kcal Atomic # 8 Polarization: -29.91 SS G_CDS: -0.31 Total: -30.22 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.39 -9.34 -44.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484272978.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.628 kcal (2) G-P(sol) polarization free energy of solvation -35.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds