Wall clock time and date at job start Tue Mar 31 2020 21:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.47106 * 119.99532 * 2 1 4 4 O 1.21617 * 119.99629 * 179.97438 * 3 2 1 5 5 N 1.34773 * 120.00040 * 0.02562 * 3 2 1 6 6 C 1.46506 * 119.99969 * 180.02562 * 5 3 2 7 7 C 1.52998 * 109.47237 * 179.72043 * 6 5 3 8 8 O 1.42900 * 112.93743 * 53.43253 * 7 6 5 9 9 C 1.53931 * 113.73582 * 281.72787 * 7 6 5 10 10 N 1.47961 * 86.18118 * 221.92388 * 9 7 6 11 11 C 1.46891 * 111.00283 * 137.58302 * 10 9 7 12 12 C 1.50703 * 109.47360 * 70.63891 * 11 10 9 13 13 O 1.21290 * 119.99451 * 359.97438 * 12 11 10 14 14 N 1.34771 * 120.00128 * 180.02562 * 12 11 10 15 15 C 1.37096 * 120.00079 * 179.97438 * 14 12 11 16 16 H 1.08001 * 120.00134 * 359.97438 * 15 14 12 17 17 C 1.38955 * 120.00022 * 180.02562 * 15 14 12 18 18 N 1.31406 * 120.00103 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99791 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47077 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.46760 * 119.99708 * 19 17 15 22 22 H 1.48493 * 109.47012 * 239.99934 * 19 17 15 23 23 C 1.47961 * 90.76198 * 24.68648 * 10 9 7 24 24 C 1.32986 * 120.00329 * 179.97438 * 2 1 3 25 25 C 1.51407 * 136.31548 * 179.62836 * 24 2 1 26 26 C 1.53385 * 87.51751 * 206.06276 * 25 24 2 27 27 C 1.51413 * 136.31796 * 0.02562 * 24 2 1 28 28 H 1.09000 * 109.46981 * 90.00080 * 1 2 3 29 29 H 1.09001 * 109.47106 * 209.99525 * 1 2 3 30 30 H 1.09000 * 109.47455 * 330.00264 * 1 2 3 31 31 H 0.97005 * 120.00161 * 359.72096 * 5 3 2 32 32 H 1.09001 * 109.46512 * 299.72412 * 6 5 3 33 33 H 1.08998 * 109.47174 * 59.71534 * 6 5 3 34 34 H 0.96706 * 114.00279 * 309.66632 * 8 7 6 35 35 H 1.09004 * 113.75688 * 336.23535 * 9 7 6 36 36 H 1.08994 * 113.76062 * 107.60287 * 9 7 6 37 37 H 1.09007 * 109.46943 * 190.63674 * 11 10 9 38 38 H 1.08995 * 109.47304 * 310.63522 * 11 10 9 39 39 H 0.97004 * 120.00256 * 359.97438 * 14 12 11 40 40 H 0.96997 * 120.00054 * 179.97438 * 18 17 15 41 41 H 1.09004 * 113.75871 * 220.99549 * 23 10 9 42 42 H 1.09000 * 113.85966 * 89.64858 * 23 10 9 43 43 H 1.08993 * 113.56307 * 320.64490 * 25 24 2 44 44 H 1.08998 * 113.55925 * 91.38375 * 25 24 2 45 45 H 1.09004 * 113.96422 * 220.29494 * 26 25 24 46 46 H 1.08996 * 113.59956 * 88.79878 * 26 25 24 47 47 H 1.09001 * 113.55355 * 268.61999 * 27 24 2 48 48 H 1.08995 * 113.55880 * 39.35111 * 27 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2424 1.2740 0.0000 4 8 3.4586 1.2741 0.0005 5 7 1.5685 2.4411 0.0005 6 6 2.3009 3.7100 0.0000 7 6 1.3067 4.8728 -0.0063 8 8 0.3452 4.7892 1.0475 9 6 0.6911 5.1543 -1.3888 10 7 0.8786 6.5871 -1.0709 11 6 1.3908 7.3220 -2.2351 12 6 0.3088 7.4270 -3.2788 13 8 -0.7816 6.9373 -3.0732 14 7 0.5531 8.0641 -4.4410 15 6 -0.4310 8.1592 -5.3907 16 1 -1.4020 7.7232 -5.2077 17 6 -0.1789 8.8156 -6.5892 18 7 1.0026 9.3457 -6.8121 19 14 -1.5198 8.9445 -7.8835 20 1 -2.7486 8.2713 -7.3918 21 1 -1.8133 10.3754 -8.1512 22 1 -1.0634 8.2900 -9.1358 23 6 1.9714 6.2557 -0.1301 24 6 2.1720 -1.1517 0.0005 25 6 3.6251 -1.5769 -0.0061 26 6 3.1710 -2.8819 -0.6720 27 6 1.8140 -2.6228 0.0007 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 0.5985 2.4411 -0.0032 32 1 2.9245 3.7698 0.8920 33 1 2.9307 3.7656 -0.8879 34 1 -0.0959 3.9308 1.1104 35 1 1.3026 4.8055 -2.2210 36 1 -0.3539 4.8562 -1.4732 37 1 1.6972 8.3219 -1.9275 38 1 2.2471 6.7917 -2.6516 39 1 1.4253 8.4554 -4.6056 40 1 1.1787 9.8036 -7.6489 41 1 1.9493 6.8377 0.7913 42 1 2.9582 6.2288 -0.5924 43 1 4.2567 -0.9603 -0.6454 44 1 4.0421 -1.7188 0.9910 45 1 3.6837 -3.7697 -0.3017 46 1 3.1401 -2.8287 -1.7602 47 1 1.7339 -3.0515 0.9997 48 1 0.9605 -2.8636 -0.6331 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484272978.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:01 Heat of formation + Delta-G solvation = -68.798764 kcal Electronic energy + Delta-G solvation = -28847.310823 eV Core-core repulsion = 24710.562272 eV Total energy + Delta-G solvation = -4136.748551 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.86086 -40.90786 -39.80243 -39.19414 -36.95637 -35.91513 -35.46018 -34.00710 -33.32121 -31.49175 -28.75828 -27.49930 -27.28673 -26.79458 -26.39680 -24.48536 -23.38218 -21.58525 -21.05680 -21.03699 -19.98072 -19.64974 -17.99503 -17.77653 -17.48210 -17.12867 -16.72457 -16.67157 -16.62024 -16.35695 -16.14760 -15.64104 -15.58477 -15.20525 -14.91106 -14.58810 -14.43078 -14.17774 -13.89105 -13.70805 -13.48949 -13.38871 -13.31154 -13.29705 -12.99359 -12.95121 -12.87817 -12.49788 -12.47797 -12.42880 -12.13735 -11.91578 -11.83768 -11.53076 -11.44764 -10.98942 -10.74035 -10.36957 -10.31141 -10.03900 -9.77711 -9.69941 -8.48913 -5.97692 0.32648 1.34762 1.40046 1.54305 1.99760 2.01927 2.20245 2.26805 2.65458 2.90611 3.17427 3.21249 3.31516 3.37414 3.54414 3.58945 3.81085 3.93842 4.00977 4.19072 4.22725 4.26222 4.38645 4.40320 4.43829 4.53613 4.58106 4.63702 4.73259 4.73543 4.76061 4.78382 4.82049 4.94617 4.98292 5.03056 5.07280 5.24118 5.34306 5.35084 5.36356 5.39413 5.70347 5.83040 6.02935 6.41514 6.57508 6.64638 7.10340 7.13988 7.53167 8.08725 8.68751 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.013761 B = 0.002148 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.251776 B =13030.242175 C =14045.929416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.184 4.184 3 C 0.553 3.447 4 O -0.579 6.579 5 N -0.717 5.717 6 C 0.111 3.889 7 C 0.113 3.887 8 O -0.534 6.534 9 C -0.005 4.005 10 N -0.473 5.473 11 C 0.019 3.981 12 C 0.440 3.560 13 O -0.618 6.618 14 N -0.574 5.574 15 C -0.332 4.332 16 H 0.078 0.922 17 C -0.014 4.014 18 N -0.920 5.920 19 Si 0.993 3.007 20 H -0.273 1.273 21 H -0.271 1.271 22 H -0.270 1.270 23 C 0.021 3.979 24 C -0.078 4.078 25 C -0.115 4.115 26 C -0.135 4.135 27 C -0.093 4.093 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.410 0.590 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.387 0.613 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.111 0.889 38 H 0.080 0.920 39 H 0.396 0.604 40 H 0.278 0.722 41 H 0.108 0.892 42 H 0.109 0.891 43 H 0.057 0.943 44 H 0.102 0.898 45 H 0.096 0.904 46 H 0.081 0.919 47 H 0.119 0.881 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.794 -22.012 15.714 27.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.187 4.187 3 C 0.343 3.657 4 O -0.461 6.461 5 N -0.371 5.371 6 C -0.013 4.013 7 C 0.070 3.930 8 O -0.340 6.340 9 C -0.135 4.135 10 N -0.196 5.196 11 C -0.112 4.112 12 C 0.228 3.772 13 O -0.504 6.504 14 N -0.211 5.211 15 C -0.461 4.461 16 H 0.096 0.904 17 C -0.214 4.214 18 N -0.561 5.561 19 Si 0.817 3.183 20 H -0.198 1.198 21 H -0.196 1.196 22 H -0.195 1.195 23 C -0.107 4.107 24 C -0.080 4.080 25 C -0.152 4.152 26 C -0.173 4.173 27 C -0.130 4.130 28 H 0.093 0.907 29 H 0.104 0.896 30 H 0.096 0.904 31 H 0.248 0.752 32 H 0.101 0.899 33 H 0.094 0.906 34 H 0.237 0.763 35 H 0.090 0.910 36 H 0.094 0.906 37 H 0.129 0.871 38 H 0.098 0.902 39 H 0.230 0.770 40 H 0.087 0.913 41 H 0.126 0.874 42 H 0.127 0.873 43 H 0.076 0.924 44 H 0.120 0.880 45 H 0.114 0.886 46 H 0.099 0.901 47 H 0.137 0.863 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 4.617 -21.164 15.995 26.927 hybrid contribution 0.065 -0.071 -1.557 1.560 sum 4.681 -21.235 14.437 26.101 Atomic orbital electron populations 1.20735 0.88177 1.04283 1.03217 1.20558 0.97337 0.90067 1.10777 1.18718 0.86895 0.84772 0.75307 1.90760 1.15228 1.88263 1.51813 1.45740 1.10939 1.05013 1.75369 1.21870 0.94417 0.81593 1.03459 1.22719 0.88988 0.94550 0.86749 1.86601 1.56143 1.39950 1.51334 1.24496 1.02250 0.89760 0.96953 1.68450 1.30974 1.10248 1.09887 1.22411 0.94903 1.02518 0.91410 1.20710 0.90059 0.82662 0.83804 1.90487 1.27272 1.52602 1.80035 1.41949 1.14722 1.49940 1.14529 1.19679 0.94998 1.35173 0.96286 0.90390 1.26060 0.99717 0.95758 0.99865 1.69674 1.22442 1.37012 1.26993 0.84866 0.77639 0.78330 0.77475 1.19796 1.19601 1.19498 1.24249 0.94864 0.92949 0.98660 1.23710 0.98479 0.95261 0.90549 1.22287 0.93798 0.97127 1.01942 1.22710 0.96840 0.97489 1.00230 1.22337 0.98735 0.88956 1.02973 0.90741 0.89563 0.90445 0.75213 0.89892 0.90650 0.76251 0.91023 0.90588 0.87148 0.90197 0.77008 0.91281 0.87378 0.87326 0.92410 0.88017 0.88556 0.90077 0.86315 0.89155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.15 9.57 71.24 0.68 -0.47 16 2 C -0.18 -3.22 6.00 -18.70 -0.11 -3.34 16 3 C 0.55 12.59 7.75 86.57 0.67 13.26 16 4 O -0.58 -17.47 15.15 -4.09 -0.06 -17.53 16 5 N -0.72 -13.13 5.28 -466.70 -2.46 -15.59 16 6 C 0.11 2.22 5.28 86.38 0.46 2.68 16 7 C 0.11 2.50 1.52 -10.15 -0.02 2.49 16 8 O -0.53 -11.87 13.50 -148.98 -2.01 -13.88 16 9 C -0.01 -0.16 6.16 86.40 0.53 0.37 16 10 N -0.47 -15.56 5.95 -915.33 -5.44 -21.00 16 11 C 0.02 0.67 5.31 85.56 0.45 1.12 16 12 C 0.44 21.29 7.59 87.66 0.67 21.96 16 13 O -0.62 -34.66 15.12 -3.06 -0.05 -34.71 16 14 N -0.57 -29.82 5.29 -306.99 -1.62 -31.44 16 15 C -0.33 -19.03 9.68 84.04 0.81 -18.21 16 16 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 17 C -0.01 -0.77 5.50 84.93 0.47 -0.31 16 18 N -0.92 -49.98 13.05 21.66 0.28 -49.69 16 19 Si 0.99 43.22 29.55 68.60 2.03 45.24 16 20 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 21 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 22 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 23 C 0.02 0.49 7.37 86.40 0.64 1.13 16 24 C -0.08 -1.28 6.60 -17.17 -0.11 -1.40 16 25 C -0.11 -1.93 6.99 30.06 0.21 -1.72 16 26 C -0.14 -1.48 8.17 30.94 0.25 -1.22 16 27 C -0.09 -0.89 7.71 30.16 0.23 -0.65 16 28 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.09 0.67 7.91 -2.39 -0.02 0.65 16 30 H 0.08 0.61 6.71 -2.39 -0.02 0.60 16 31 H 0.41 5.54 5.41 -92.70 -0.50 5.04 16 32 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.08 1.63 8.04 -2.39 -0.02 1.61 16 34 H 0.39 5.49 7.61 -74.05 -0.56 4.92 16 35 H 0.07 2.14 7.67 -2.39 -0.02 2.12 16 36 H 0.08 2.60 8.09 -2.39 -0.02 2.58 16 37 H 0.11 3.47 8.14 -2.38 -0.02 3.45 16 38 H 0.08 2.38 7.69 -2.39 -0.02 2.36 16 39 H 0.40 19.51 7.90 -92.71 -0.73 18.78 16 40 H 0.28 14.07 8.31 -92.71 -0.77 13.29 16 41 H 0.11 2.38 8.14 -2.38 -0.02 2.36 16 42 H 0.11 1.98 7.75 -2.39 -0.02 1.96 16 43 H 0.06 1.29 7.49 -2.39 -0.02 1.27 16 44 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 46 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 47 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 48 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -78.30 396.42 -4.30 -82.60 By element: Atomic # 1 Polarization: 41.11 SS G_CDS: -0.79 Total: 40.32 kcal Atomic # 6 Polarization: 9.86 SS G_CDS: 5.83 Total: 15.69 kcal Atomic # 7 Polarization: -108.48 SS G_CDS: -9.25 Total: -117.73 kcal Atomic # 8 Polarization: -64.00 SS G_CDS: -2.12 Total: -66.12 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.24 kcal Total: -78.30 -4.30 -82.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484272978.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.797 kcal (2) G-P(sol) polarization free energy of solvation -78.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds