Wall clock time and date at job start Tue Mar 31 2020 20:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.34215 * 125.43681 * 2 1 4 4 C 1.33654 * 110.90967 * 179.97438 * 3 2 1 5 5 C 1.50705 * 125.80096 * 180.02562 * 4 3 2 6 6 C 1.36414 * 108.39353 * 0.02562 * 4 3 2 7 7 C 1.47380 * 127.19000 * 179.97438 * 6 4 3 8 8 O 1.21608 * 120.00197 * 89.97253 * 7 6 4 9 9 N 1.34778 * 119.99651 * 269.97514 * 7 6 4 10 10 C 1.46498 * 120.00370 * 359.97438 * 9 7 6 11 11 C 1.46501 * 119.99759 * 180.02562 * 9 7 6 12 12 C 1.52998 * 109.47629 * 89.99723 * 11 9 7 13 13 N 1.46893 * 109.47573 * 180.02562 * 12 11 9 14 14 C 1.46893 * 111.00460 * 179.97438 * 13 12 11 15 15 C 1.50697 * 109.47643 * 179.97438 * 14 13 12 16 16 O 1.21292 * 119.99637 * 0.02562 * 15 14 13 17 17 N 1.34782 * 120.00423 * 179.97438 * 15 14 13 18 18 C 1.37095 * 120.00126 * 179.97438 * 17 15 14 19 19 H 1.07994 * 119.99886 * 0.02562 * 18 17 15 20 20 C 1.38949 * 119.99563 * 179.97438 * 18 17 15 21 21 N 1.31404 * 120.00488 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99435 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47299 * 60.00508 * 22 20 18 24 24 H 1.48503 * 109.46828 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47554 * 300.00485 * 22 20 18 26 26 C 1.34172 * 125.44135 * 179.97438 * 2 1 3 27 27 C 1.50706 * 127.02111 * 359.97438 * 26 2 1 28 28 H 1.09003 * 109.47362 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.46890 * 120.02122 * 1 2 3 30 30 H 1.09001 * 109.47222 * 240.02152 * 1 2 3 31 31 H 1.08998 * 109.47079 * 359.97438 * 5 4 3 32 32 H 1.09001 * 109.46613 * 119.97767 * 5 4 3 33 33 H 1.08999 * 109.47072 * 239.97943 * 5 4 3 34 34 H 1.09002 * 109.46598 * 90.00021 * 10 9 7 35 35 H 1.09001 * 109.47074 * 210.00029 * 10 9 7 36 36 H 1.09002 * 109.46960 * 330.00288 * 10 9 7 37 37 H 1.09001 * 109.47247 * 210.00184 * 11 9 7 38 38 H 1.09004 * 109.47243 * 329.99319 * 11 9 7 39 39 H 1.09006 * 109.46539 * 300.00217 * 12 11 9 40 40 H 1.09000 * 109.46644 * 59.99528 * 12 11 9 41 41 H 1.00904 * 111.00066 * 56.04115 * 13 12 11 42 42 H 1.09000 * 109.47239 * 299.99968 * 14 13 12 43 43 H 1.09001 * 109.47192 * 59.99452 * 14 13 12 44 44 H 0.96997 * 119.99328 * 0.02562 * 17 15 14 45 45 H 0.96999 * 120.00128 * 179.97438 * 21 20 18 46 46 H 1.08997 * 109.47359 * 270.03118 * 27 26 2 47 47 H 1.09003 * 109.46910 * 30.02795 * 27 26 2 48 48 H 1.08995 * 109.46868 * 150.02195 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2852 1.0935 0.0000 4 6 3.5790 0.7583 0.0006 5 6 4.7390 1.7204 0.0013 6 6 3.6710 -0.6028 0.0004 7 6 4.9025 -1.4124 0.0003 8 8 5.4108 -1.7462 1.0534 9 7 5.4652 -1.7829 -1.1670 10 6 4.8526 -1.3812 -2.4357 11 6 6.6891 -2.5882 -1.1671 12 6 6.3223 -4.0735 -1.1670 13 7 7.5494 -4.8810 -1.1665 14 6 7.2355 -6.3160 -1.1657 15 6 8.5160 -7.1105 -1.1658 16 8 9.5851 -6.5375 -1.1660 17 7 8.4734 -8.4576 -1.1647 18 6 9.6384 -9.1803 -1.1653 19 1 10.5902 -8.6702 -1.1663 20 6 9.5943 -10.5691 -1.1636 21 7 8.4361 -11.1898 -1.1619 22 14 11.1816 -11.5538 -1.1638 23 1 11.9723 -11.2185 0.0477 24 1 10.8642 -13.0045 -1.1624 25 1 11.9704 -11.2213 -2.3773 26 6 2.2850 -1.0931 0.0005 27 6 1.8309 -2.5301 0.0017 28 1 -0.3634 1.0277 -0.0005 29 1 -0.3633 -0.5142 -0.8898 30 1 -0.3634 -0.5135 0.8902 31 1 4.3626 2.7433 0.0008 32 1 5.3460 1.5568 0.8918 33 1 5.3473 1.5567 -0.8882 34 1 5.2650 -0.4227 -2.7508 35 1 5.0626 -2.1344 -3.1951 36 1 3.7745 -1.2876 -2.3050 37 1 7.2750 -2.3587 -2.0571 38 1 7.2752 -2.3585 -0.2772 39 1 5.7364 -4.3029 -0.2768 40 1 5.7362 -4.3031 -2.0568 41 1 8.1405 -4.6400 -0.3850 42 1 6.6558 -6.5606 -0.2756 43 1 6.6558 -6.5616 -2.0555 44 1 7.6184 -8.9157 -1.1642 45 1 8.4053 -12.1593 -1.1611 46 1 1.7212 -2.8757 1.0296 47 1 0.8728 -2.6088 -0.5122 48 1 2.5700 -3.1451 -0.5116 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493625907.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:16:21 Heat of formation + Delta-G solvation = -60.827467 kcal Electronic energy + Delta-G solvation = -28610.410307 eV Core-core repulsion = 24474.007418 eV Total energy + Delta-G solvation = -4136.402889 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 2.07 seconds Orbital eigenvalues (eV) -42.94592 -39.86472 -38.25169 -36.34235 -34.98909 -34.56497 -33.81182 -33.36137 -31.21651 -30.19832 -29.88380 -28.43179 -27.04602 -26.16931 -24.89250 -24.11891 -22.97694 -21.74621 -20.01104 -19.27659 -18.88673 -17.86588 -17.44909 -16.93034 -16.38109 -16.27524 -15.89883 -15.48683 -15.29315 -14.57440 -14.45066 -14.21901 -14.00343 -13.92990 -13.72517 -13.53692 -13.37920 -13.31887 -13.21296 -13.14677 -13.06094 -12.99793 -12.79447 -12.60043 -12.54466 -12.19376 -12.00908 -11.59664 -11.48898 -11.47639 -11.10455 -10.95063 -10.42292 -10.27973 -10.18972 -9.65109 -9.47650 -8.95104 -8.62402 -8.43156 -8.05737 -7.93581 -6.39182 -3.79977 1.26332 1.85801 2.28965 2.39432 2.81756 3.22237 3.27517 3.32263 3.93698 4.04423 4.15423 4.27470 4.45982 4.49796 4.66269 4.76192 4.88475 4.91589 4.98667 4.99888 5.02272 5.06193 5.15605 5.21166 5.24543 5.29963 5.33111 5.34408 5.40193 5.42438 5.51717 5.55206 5.59041 5.76856 5.81958 5.88202 5.91008 6.01304 6.10640 6.24318 6.32844 6.76901 7.10278 7.19970 7.57442 7.65966 7.93676 8.08627 8.63959 9.20188 9.56830 10.08448 10.78550 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.024465 B = 0.001813 C = 0.001737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.216283 B =15436.971612 C =16118.573044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.014 4.014 3 O -0.172 6.172 4 C 0.039 3.961 5 C -0.079 4.079 6 C -0.220 4.220 7 C 0.591 3.409 8 O -0.527 6.527 9 N -0.606 5.606 10 C 0.080 3.920 11 C 0.117 3.883 12 C 0.046 3.954 13 N -0.666 5.666 14 C 0.052 3.948 15 C 0.441 3.559 16 O -0.583 6.583 17 N -0.564 5.564 18 C -0.299 4.299 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.932 3.068 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.273 1.273 26 C -0.147 4.147 27 C -0.085 4.085 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.056 0.944 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.030 0.970 40 H 0.071 0.929 41 H 0.351 0.649 42 H 0.044 0.956 43 H 0.085 0.915 44 H 0.392 0.608 45 H 0.272 0.728 46 H 0.072 0.928 47 H 0.070 0.930 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.954 24.741 -1.314 31.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.063 4.063 3 O -0.069 6.069 4 C -0.012 4.012 5 C -0.136 4.136 6 C -0.224 4.224 7 C 0.378 3.622 8 O -0.402 6.402 9 N -0.340 5.340 10 C -0.063 4.063 11 C -0.006 4.006 12 C -0.085 4.085 13 N -0.299 5.299 14 C -0.080 4.080 15 C 0.227 3.773 16 O -0.467 6.467 17 N -0.200 5.200 18 C -0.429 4.429 19 H 0.121 0.879 20 C -0.180 4.180 21 N -0.544 5.544 22 Si 0.759 3.241 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.199 1.199 26 C -0.148 4.148 27 C -0.142 4.142 28 H 0.095 0.905 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.101 0.899 32 H 0.110 0.890 33 H 0.107 0.893 34 H 0.075 0.925 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.109 0.891 38 H 0.104 0.896 39 H 0.049 0.951 40 H 0.089 0.911 41 H 0.170 0.830 42 H 0.062 0.938 43 H 0.104 0.896 44 H 0.225 0.775 45 H 0.082 0.918 46 H 0.091 0.909 47 H 0.089 0.911 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -18.021 25.041 -1.442 30.885 hybrid contribution -0.134 -1.209 0.813 1.463 sum -18.154 23.832 -0.628 29.966 Atomic orbital electron populations 1.20313 0.84687 1.04041 1.03715 1.21980 0.93760 0.83175 1.07379 1.83669 1.15929 1.35198 1.72112 1.22424 0.83264 0.93242 1.02305 1.20441 0.91664 0.97140 1.04330 1.20915 0.93883 0.93176 1.14426 1.17397 0.82507 0.78778 0.83477 1.90827 1.63119 1.55215 1.31072 1.47779 1.27341 1.52760 1.06092 1.21800 0.98717 1.00569 0.85231 1.21461 0.85219 0.89599 1.04323 1.22252 0.92670 0.92828 1.00719 1.60025 1.15394 1.03159 1.51342 1.21652 0.96989 0.88172 1.01220 1.19792 0.90043 0.83037 0.84448 1.90519 1.30858 1.69951 1.55371 1.41852 1.09546 1.04232 1.64412 1.19661 0.87216 0.88387 1.47640 0.87950 1.25266 0.98479 0.96899 0.97349 1.69603 1.24343 1.09830 1.50598 0.85907 0.81192 0.77976 0.79069 1.19916 1.20998 1.19891 1.21036 0.89926 0.96511 1.07368 1.20202 1.01296 0.89980 1.02672 0.90475 0.89556 0.89591 0.89883 0.89049 0.89268 0.92545 0.90446 0.90981 0.89075 0.89615 0.95140 0.91102 0.82958 0.93820 0.89637 0.77457 0.91840 0.90931 0.91094 0.91448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.34 9.93 36.01 0.36 0.02 16 2 C -0.01 -0.12 7.28 -35.74 -0.26 -0.38 16 3 O -0.17 -1.66 10.52 7.65 0.08 -1.58 16 4 C 0.04 0.38 7.37 -34.96 -0.26 0.12 16 5 C -0.08 -0.53 10.18 36.01 0.37 -0.17 16 6 C -0.22 -2.48 4.26 -103.28 -0.44 -2.92 16 7 C 0.59 7.73 7.27 -12.54 -0.09 7.64 16 8 O -0.53 -8.99 16.69 5.27 0.09 -8.91 16 9 N -0.61 -6.57 2.87 -182.86 -0.53 -7.09 16 10 C 0.08 0.61 10.26 59.85 0.61 1.22 16 11 C 0.12 1.39 5.67 -4.04 -0.02 1.37 16 12 C 0.05 0.63 6.01 -3.83 -0.02 0.60 16 13 N -0.67 -11.31 6.13 -115.07 -0.70 -12.01 16 14 C 0.05 0.97 6.17 -4.98 -0.03 0.94 16 15 C 0.44 10.73 7.82 -10.98 -0.09 10.65 16 16 O -0.58 -16.19 15.78 5.55 0.09 -16.10 16 17 N -0.56 -14.63 5.29 -10.97 -0.06 -14.69 16 18 C -0.30 -8.51 9.68 -14.93 -0.14 -8.65 16 19 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 20 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 21 N -0.90 -24.88 13.05 55.50 0.72 -24.16 16 22 Si 0.93 21.35 29.55 -169.99 -5.02 16.33 16 23 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 26 C -0.15 -1.45 6.14 -102.50 -0.63 -2.08 16 27 C -0.08 -0.71 10.15 36.01 0.37 -0.34 16 28 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.08 0.52 8.07 -51.93 -0.42 0.10 16 36 H 0.07 0.54 6.69 -51.93 -0.35 0.19 16 37 H 0.09 0.98 8.07 -51.93 -0.42 0.56 16 38 H 0.09 1.15 7.42 -51.93 -0.39 0.77 16 39 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.35 6.25 8.43 -39.29 -0.33 5.92 16 42 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 44 H 0.39 9.72 7.90 -40.82 -0.32 9.39 16 45 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 46 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.07 0.42 7.90 -51.93 -0.41 0.01 16 48 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 410.67 15.07 6.19 6.19 Total: -1.00 -35.50 410.67 -7.16 -42.66 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: -7.64 Total: 10.85 kcal Atomic # 6 Polarization: 8.89 SS G_CDS: -0.38 Total: 8.51 kcal Atomic # 7 Polarization: -57.39 SS G_CDS: -0.56 Total: -57.95 kcal Atomic # 8 Polarization: -26.84 SS G_CDS: 0.26 Total: -26.59 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -35.50 -7.16 -42.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493625907.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.163 kcal (2) G-P(sol) polarization free energy of solvation -35.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.07 seconds