Wall clock time and date at job start Tue Mar 31 2020 20:16:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.34215 * 125.43681 * 2 1 4 4 C 1.33654 * 110.90967 * 179.97438 * 3 2 1 5 5 C 1.50705 * 125.80096 * 180.02562 * 4 3 2 6 6 C 1.36414 * 108.39353 * 0.02562 * 4 3 2 7 7 C 1.47380 * 127.19000 * 179.97438 * 6 4 3 8 8 O 1.21608 * 120.00197 * 89.97253 * 7 6 4 9 9 N 1.34778 * 119.99651 * 269.97514 * 7 6 4 10 10 C 1.46498 * 120.00370 * 359.97438 * 9 7 6 11 11 C 1.46501 * 119.99759 * 180.02562 * 9 7 6 12 12 C 1.52998 * 109.47629 * 89.99723 * 11 9 7 13 13 N 1.46893 * 109.47573 * 180.02562 * 12 11 9 14 14 C 1.46893 * 111.00460 * 179.97438 * 13 12 11 15 15 C 1.50697 * 109.47643 * 179.97438 * 14 13 12 16 16 O 1.21292 * 119.99637 * 0.02562 * 15 14 13 17 17 N 1.34782 * 120.00423 * 179.97438 * 15 14 13 18 18 C 1.37095 * 120.00126 * 179.97438 * 17 15 14 19 19 H 1.07994 * 119.99886 * 0.02562 * 18 17 15 20 20 C 1.38949 * 119.99563 * 179.97438 * 18 17 15 21 21 N 1.31404 * 120.00488 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99435 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47299 * 60.00508 * 22 20 18 24 24 H 1.48503 * 109.46828 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47554 * 300.00485 * 22 20 18 26 26 C 1.34172 * 125.44135 * 179.97438 * 2 1 3 27 27 C 1.50706 * 127.02111 * 359.97438 * 26 2 1 28 28 H 1.09003 * 109.47362 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.46890 * 120.02122 * 1 2 3 30 30 H 1.09001 * 109.47222 * 240.02152 * 1 2 3 31 31 H 1.08998 * 109.47079 * 359.97438 * 5 4 3 32 32 H 1.09001 * 109.46613 * 119.97767 * 5 4 3 33 33 H 1.08999 * 109.47072 * 239.97943 * 5 4 3 34 34 H 1.09002 * 109.46598 * 90.00021 * 10 9 7 35 35 H 1.09001 * 109.47074 * 210.00029 * 10 9 7 36 36 H 1.09002 * 109.46960 * 330.00288 * 10 9 7 37 37 H 1.09001 * 109.47247 * 210.00184 * 11 9 7 38 38 H 1.09004 * 109.47243 * 329.99319 * 11 9 7 39 39 H 1.09006 * 109.46539 * 300.00217 * 12 11 9 40 40 H 1.09000 * 109.46644 * 59.99528 * 12 11 9 41 41 H 1.00904 * 111.00066 * 56.04115 * 13 12 11 42 42 H 1.09000 * 109.47239 * 299.99968 * 14 13 12 43 43 H 1.09001 * 109.47192 * 59.99452 * 14 13 12 44 44 H 0.96997 * 119.99328 * 0.02562 * 17 15 14 45 45 H 0.96999 * 120.00128 * 179.97438 * 21 20 18 46 46 H 1.08997 * 109.47359 * 270.03118 * 27 26 2 47 47 H 1.09003 * 109.46910 * 30.02795 * 27 26 2 48 48 H 1.08995 * 109.46868 * 150.02195 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2852 1.0935 0.0000 4 6 3.5790 0.7583 0.0006 5 6 4.7390 1.7204 0.0013 6 6 3.6710 -0.6028 0.0004 7 6 4.9025 -1.4124 0.0003 8 8 5.4108 -1.7462 1.0534 9 7 5.4652 -1.7829 -1.1670 10 6 4.8526 -1.3812 -2.4357 11 6 6.6891 -2.5882 -1.1671 12 6 6.3223 -4.0735 -1.1670 13 7 7.5494 -4.8810 -1.1665 14 6 7.2355 -6.3160 -1.1657 15 6 8.5160 -7.1105 -1.1658 16 8 9.5851 -6.5375 -1.1660 17 7 8.4734 -8.4576 -1.1647 18 6 9.6384 -9.1803 -1.1653 19 1 10.5902 -8.6702 -1.1663 20 6 9.5943 -10.5691 -1.1636 21 7 8.4361 -11.1898 -1.1619 22 14 11.1816 -11.5538 -1.1638 23 1 11.9723 -11.2185 0.0477 24 1 10.8642 -13.0045 -1.1624 25 1 11.9704 -11.2213 -2.3773 26 6 2.2850 -1.0931 0.0005 27 6 1.8309 -2.5301 0.0017 28 1 -0.3634 1.0277 -0.0005 29 1 -0.3633 -0.5142 -0.8898 30 1 -0.3634 -0.5135 0.8902 31 1 4.3626 2.7433 0.0008 32 1 5.3460 1.5568 0.8918 33 1 5.3473 1.5567 -0.8882 34 1 5.2650 -0.4227 -2.7508 35 1 5.0626 -2.1344 -3.1951 36 1 3.7745 -1.2876 -2.3050 37 1 7.2750 -2.3587 -2.0571 38 1 7.2752 -2.3585 -0.2772 39 1 5.7364 -4.3029 -0.2768 40 1 5.7362 -4.3031 -2.0568 41 1 8.1405 -4.6400 -0.3850 42 1 6.6558 -6.5606 -0.2756 43 1 6.6558 -6.5616 -2.0555 44 1 7.6184 -8.9157 -1.1642 45 1 8.4053 -12.1593 -1.1611 46 1 1.7212 -2.8757 1.0296 47 1 0.8728 -2.6088 -0.5122 48 1 2.5700 -3.1451 -0.5116 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493625907.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:16:18 Heat of formation + Delta-G solvation = -86.250634 kcal Electronic energy + Delta-G solvation = -28611.512739 eV Core-core repulsion = 24474.007418 eV Total energy + Delta-G solvation = -4137.505321 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 2.33 seconds Orbital eigenvalues (eV) -43.64511 -40.85523 -40.15982 -37.54958 -36.28236 -35.75589 -35.23086 -34.06549 -33.29023 -31.12638 -30.59464 -29.14948 -28.14954 -27.42414 -26.07079 -25.25250 -24.07650 -22.73519 -21.17473 -20.70619 -19.95995 -19.71403 -18.28988 -17.90376 -17.72580 -17.25564 -17.06143 -16.71500 -16.45659 -16.24288 -15.92356 -15.41210 -15.19168 -14.98607 -14.64295 -14.50304 -14.44173 -14.09345 -14.03809 -13.92904 -13.85148 -13.67636 -13.55249 -13.49070 -13.40057 -13.33761 -13.17350 -13.03525 -12.93011 -12.76954 -12.44319 -12.24054 -12.14607 -12.12564 -11.51616 -11.30096 -10.43014 -10.40827 -10.03712 -9.84191 -9.47332 -9.27752 -8.47619 -5.96825 0.56427 1.14303 1.31769 1.39547 1.41388 1.52674 1.72685 1.96177 2.02294 2.29159 2.93767 3.19018 3.39780 3.50704 3.56819 3.87106 3.93811 4.03241 4.10967 4.23618 4.28445 4.31373 4.37811 4.44087 4.45192 4.50297 4.53733 4.59250 4.64431 4.65738 4.75510 4.76631 4.83681 4.83911 4.88206 4.91559 4.96588 5.04191 5.20057 5.36141 5.39838 5.50610 5.79964 6.03396 6.08325 6.20404 6.25418 6.57942 6.97487 7.10506 7.53377 8.08453 8.69557 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.024465 B = 0.001813 C = 0.001737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.216283 B =15436.971612 C =16118.573044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.010 4.010 3 O -0.177 6.177 4 C 0.039 3.961 5 C -0.080 4.080 6 C -0.246 4.246 7 C 0.592 3.408 8 O -0.579 6.579 9 N -0.599 5.599 10 C 0.076 3.924 11 C 0.122 3.878 12 C 0.056 3.944 13 N -0.673 5.673 14 C 0.066 3.934 15 C 0.438 3.562 16 O -0.622 6.622 17 N -0.572 5.572 18 C -0.336 4.336 19 H 0.080 0.920 20 C -0.014 4.014 21 N -0.920 5.920 22 Si 0.995 3.005 23 H -0.272 1.272 24 H -0.270 1.270 25 H -0.271 1.271 26 C -0.169 4.169 27 C -0.081 4.081 28 H 0.087 0.913 29 H 0.105 0.895 30 H 0.096 0.904 31 H 0.103 0.897 32 H 0.083 0.917 33 H 0.101 0.899 34 H 0.075 0.925 35 H 0.091 0.909 36 H 0.074 0.926 37 H 0.109 0.891 38 H 0.066 0.934 39 H 0.017 0.983 40 H 0.089 0.911 41 H 0.344 0.656 42 H 0.060 0.940 43 H 0.109 0.891 44 H 0.397 0.603 45 H 0.278 0.722 46 H 0.064 0.936 47 H 0.097 0.903 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.548 25.384 -2.572 32.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.059 4.059 3 O -0.074 6.074 4 C -0.012 4.012 5 C -0.136 4.136 6 C -0.251 4.251 7 C 0.380 3.620 8 O -0.459 6.459 9 N -0.330 5.330 10 C -0.065 4.065 11 C -0.001 4.001 12 C -0.075 4.075 13 N -0.306 5.306 14 C -0.066 4.066 15 C 0.225 3.775 16 O -0.508 6.508 17 N -0.209 5.209 18 C -0.466 4.466 19 H 0.098 0.902 20 C -0.214 4.214 21 N -0.561 5.561 22 Si 0.818 3.182 23 H -0.198 1.198 24 H -0.194 1.194 25 H -0.196 1.196 26 C -0.171 4.171 27 C -0.138 4.138 28 H 0.106 0.894 29 H 0.123 0.877 30 H 0.114 0.886 31 H 0.122 0.878 32 H 0.102 0.898 33 H 0.120 0.880 34 H 0.093 0.907 35 H 0.110 0.890 36 H 0.093 0.907 37 H 0.127 0.873 38 H 0.084 0.916 39 H 0.035 0.965 40 H 0.107 0.893 41 H 0.162 0.838 42 H 0.078 0.922 43 H 0.127 0.873 44 H 0.230 0.770 45 H 0.088 0.912 46 H 0.083 0.917 47 H 0.116 0.884 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -19.664 25.694 -2.743 32.471 hybrid contribution 0.306 -1.347 1.185 1.820 sum -19.358 24.347 -1.558 31.144 Atomic orbital electron populations 1.20521 0.81886 1.05245 1.05087 1.22664 0.95220 0.82424 1.05548 1.83696 1.15974 1.35713 1.72027 1.22858 0.83933 0.93231 1.01199 1.20561 0.90815 0.97712 1.04505 1.20934 0.93768 0.93906 1.16476 1.17707 0.82707 0.78358 0.83198 1.90791 1.64686 1.57464 1.32962 1.47829 1.26689 1.51669 1.06831 1.22023 0.98817 1.01948 0.83740 1.21343 0.85730 0.88809 1.04239 1.22244 0.91173 0.93197 1.00838 1.60052 1.16859 1.02594 1.51066 1.21526 0.93834 0.88251 1.03037 1.20780 0.91585 0.82738 0.82403 1.90488 1.33066 1.70605 1.56669 1.41917 1.09105 1.04936 1.64924 1.19654 0.87363 0.89389 1.50150 0.90214 1.26078 1.01877 0.97227 0.96171 1.69665 1.25860 1.10430 1.50102 0.84961 0.77241 0.76977 0.78978 1.19760 1.19400 1.19579 1.21266 0.89547 0.97559 1.08706 1.20202 1.02203 0.89019 1.02379 0.89386 0.87663 0.88554 0.87811 0.89827 0.88021 0.90653 0.89023 0.90730 0.87286 0.91554 0.96491 0.89282 0.83828 0.92247 0.87271 0.76957 0.91232 0.91702 0.88426 0.92773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.49 9.93 71.24 0.71 0.22 16 2 C -0.01 -0.16 7.28 24.76 0.18 0.02 16 3 O -0.18 -3.17 10.52 4.45 0.05 -3.13 16 4 C 0.04 0.74 7.37 25.26 0.19 0.92 16 5 C -0.08 -0.99 10.18 71.24 0.72 -0.27 16 6 C -0.25 -5.52 4.26 -18.99 -0.08 -5.60 16 7 C 0.59 15.74 7.27 86.65 0.63 16.37 16 8 O -0.58 -20.76 16.69 -4.06 -0.07 -20.83 16 9 N -0.60 -12.58 2.87 -850.71 -2.44 -15.03 16 10 C 0.08 1.01 10.26 127.77 1.31 2.32 16 11 C 0.12 2.86 5.67 86.38 0.49 3.35 16 12 C 0.06 1.46 6.01 86.30 0.52 1.98 16 13 N -0.67 -22.55 6.13 -517.96 -3.17 -25.73 16 14 C 0.07 2.39 6.17 85.56 0.53 2.92 16 15 C 0.44 21.52 7.82 87.66 0.69 22.20 16 16 O -0.62 -35.36 15.78 -3.07 -0.05 -35.40 16 17 N -0.57 -30.09 5.29 -306.99 -1.62 -31.71 16 18 C -0.34 -19.45 9.68 84.04 0.81 -18.63 16 19 H 0.08 4.89 7.16 -2.91 -0.02 4.87 16 20 C -0.01 -0.74 5.50 84.93 0.47 -0.28 16 21 N -0.92 -50.26 13.05 21.66 0.28 -49.97 16 22 Si 1.00 43.46 29.55 68.60 2.03 45.49 16 23 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 24 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 25 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 26 C -0.17 -3.23 6.14 -18.49 -0.11 -3.34 16 27 C -0.08 -1.30 10.15 71.24 0.72 -0.58 16 28 H 0.09 0.43 8.14 -2.39 -0.02 0.42 16 29 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.09 0.97 8.07 -2.39 -0.02 0.95 16 36 H 0.07 0.99 6.69 -2.39 -0.02 0.98 16 37 H 0.11 2.17 8.07 -2.39 -0.02 2.16 16 38 H 0.07 1.84 7.42 -2.39 -0.02 1.82 16 39 H 0.02 0.50 8.14 -2.38 -0.02 0.48 16 40 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 41 H 0.34 12.44 8.43 -89.69 -0.76 11.68 16 42 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 43 H 0.11 3.47 8.14 -2.39 -0.02 3.45 16 44 H 0.40 19.79 7.90 -92.71 -0.73 19.05 16 45 H 0.28 14.22 8.31 -92.71 -0.77 13.45 16 46 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 47 H 0.10 0.96 7.90 -2.39 -0.02 0.94 16 48 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -78.55 410.67 2.27 -76.28 By element: Atomic # 1 Polarization: 38.94 SS G_CDS: -0.50 Total: 38.44 kcal Atomic # 6 Polarization: 13.83 SS G_CDS: 7.77 Total: 21.60 kcal Atomic # 7 Polarization: -115.48 SS G_CDS: -6.96 Total: -122.44 kcal Atomic # 8 Polarization: -59.29 SS G_CDS: -0.07 Total: -59.36 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -78.55 2.27 -76.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493625907.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.972 kcal (2) G-P(sol) polarization free energy of solvation -78.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.33 seconds