Wall clock time and date at job start Tue Mar 31 2020 20:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34181 * 127.02059 * 2 1 4 4 O 1.34214 * 109.12131 * 180.02562 * 3 2 1 5 5 C 1.33649 * 110.91059 * 359.97438 * 4 3 2 6 6 C 1.50708 * 125.80370 * 180.02562 * 5 4 3 7 7 C 1.36421 * 108.39581 * 359.71469 * 5 4 3 8 8 C 1.47381 * 127.18938 * 180.30663 * 7 5 4 9 9 O 1.21616 * 119.99873 * 270.14460 * 8 7 5 10 10 N 1.34771 * 120.00204 * 90.15313 * 8 7 5 11 11 C 1.46503 * 119.99979 * 359.97438 * 10 8 7 12 12 C 1.46500 * 120.00275 * 179.97438 * 10 8 7 13 13 C 1.52999 * 109.47265 * 89.99723 * 12 10 8 14 14 N 1.46898 * 109.47105 * 180.02562 * 13 12 10 15 15 C 1.46902 * 111.00011 * 66.04914 * 14 13 12 16 16 C 1.46901 * 110.99929 * 189.99555 * 14 13 12 17 17 C 1.50701 * 109.47118 * 170.00132 * 16 14 13 18 18 O 1.21293 * 119.99860 * 0.02562 * 17 16 14 19 19 N 1.34775 * 120.00264 * 180.02562 * 17 16 14 20 20 C 1.37094 * 119.99986 * 180.02562 * 19 17 16 21 21 H 1.07998 * 120.00128 * 359.97438 * 20 19 17 22 22 C 1.38957 * 119.99864 * 179.97438 * 20 19 17 23 23 N 1.31413 * 119.99921 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00077 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47459 * 89.99795 * 24 22 20 26 26 H 1.48501 * 109.46947 * 210.00395 * 24 22 20 27 27 H 1.48501 * 109.46763 * 329.99684 * 24 22 20 28 28 H 1.09002 * 109.47152 * 90.02784 * 1 2 3 29 29 H 1.09001 * 109.46980 * 330.02885 * 1 2 3 30 30 H 1.09004 * 109.47113 * 210.02866 * 1 2 3 31 31 H 1.07997 * 125.43877 * 359.97438 * 3 2 1 32 32 H 1.08994 * 109.46602 * 359.96874 * 6 5 4 33 33 H 1.08995 * 109.46976 * 119.97260 * 6 5 4 34 34 H 1.09000 * 109.46962 * 239.97224 * 6 5 4 35 35 H 1.08995 * 109.47430 * 89.99888 * 11 10 8 36 36 H 1.09003 * 109.46760 * 210.00456 * 11 10 8 37 37 H 1.08998 * 109.46916 * 329.99662 * 11 10 8 38 38 H 1.09003 * 109.47421 * 210.00103 * 12 10 8 39 39 H 1.08999 * 109.47205 * 329.99628 * 12 10 8 40 40 H 1.08996 * 109.47139 * 300.00163 * 13 12 10 41 41 H 1.08999 * 109.47087 * 59.99832 * 13 12 10 42 42 H 1.08997 * 109.47169 * 59.99384 * 15 14 13 43 43 H 1.08996 * 109.47491 * 180.02562 * 15 14 13 44 44 H 1.09003 * 109.46858 * 299.99434 * 15 14 13 45 45 H 1.08990 * 109.47611 * 290.00439 * 16 14 13 46 46 H 1.09007 * 109.46690 * 50.00487 * 16 14 13 47 47 H 0.96997 * 119.99774 * 359.97438 * 19 17 16 48 48 H 0.96996 * 120.00360 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3149 1.0713 0.0000 4 8 3.5921 0.6588 -0.0006 5 6 3.6623 -0.6758 -0.0004 6 6 4.9292 -1.4920 -0.0003 7 6 2.3922 -1.1737 0.0068 8 6 1.9914 -2.5920 0.0158 9 8 1.8249 -3.1835 -1.0336 10 7 1.8093 -3.2333 1.1871 11 6 2.0102 -2.5208 2.4513 12 6 1.4103 -4.6429 1.1961 13 6 2.6594 -5.5265 1.2000 14 7 2.2593 -6.9399 1.2084 15 6 1.5790 -7.3020 -0.0423 16 6 3.4157 -7.8129 1.4503 17 6 2.9391 -9.2213 1.6961 18 8 1.7529 -9.4731 1.6717 19 7 3.8310 -10.2011 1.9431 20 6 3.3975 -11.4824 2.1662 21 1 2.3412 -11.7066 2.1444 22 6 4.3171 -12.4927 2.4203 23 7 5.6023 -12.2200 2.4463 24 14 3.7264 -14.2387 2.7236 25 1 3.6554 -14.9686 1.4324 26 1 4.6751 -14.9313 3.6323 27 1 2.3793 -14.2041 3.3475 28 1 -0.3633 -0.0005 -1.0277 29 1 -0.3633 0.8903 0.5134 30 1 -0.3633 -0.8898 0.5143 31 1 1.9895 2.1011 -0.0004 32 1 5.7911 -0.8249 -0.0010 33 1 4.9566 -2.1203 0.8899 34 1 4.9561 -2.1212 -0.8900 35 1 1.0713 -2.0642 2.7643 36 1 2.3451 -3.2230 3.2148 37 1 2.7639 -1.7452 2.3154 38 1 0.8179 -4.8472 2.0880 39 1 0.8159 -4.8580 0.3082 40 1 3.2516 -5.3222 0.3081 41 1 3.2538 -5.3114 2.0879 42 1 2.2515 -7.1340 -0.8834 43 1 1.2932 -8.3533 -0.0093 44 1 0.6870 -6.6870 -0.1618 45 1 4.0709 -7.7978 0.5795 46 1 3.9632 -7.4571 2.3232 47 1 4.7797 -9.9998 1.9623 48 1 6.2443 -12.9250 2.6241 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496696727.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:16:05 Heat of formation + Delta-G solvation = -44.891602 kcal Electronic energy + Delta-G solvation = -29092.382242 eV Core-core repulsion = 24956.670384 eV Total energy + Delta-G solvation = -4135.711859 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -42.91684 -39.89470 -38.54950 -36.71108 -35.40133 -34.26837 -33.81151 -32.88633 -31.23125 -30.11015 -28.48823 -27.65819 -27.06892 -26.69887 -25.38551 -24.26651 -22.59792 -21.00344 -20.21196 -19.31834 -19.06800 -17.84640 -17.78421 -16.94955 -16.41305 -16.12519 -15.98280 -15.40709 -15.19472 -14.69046 -14.57949 -14.38034 -14.03709 -13.83089 -13.68283 -13.64463 -13.34827 -13.31241 -13.23540 -13.11345 -12.99529 -12.79705 -12.70943 -12.50577 -12.06626 -12.00861 -11.69292 -11.49084 -11.28708 -11.19321 -10.90909 -10.76360 -10.37457 -10.27832 -10.19741 -9.70185 -9.45496 -8.96542 -8.80981 -8.39647 -7.95526 -7.83027 -6.39650 -3.80229 1.27149 1.87004 2.29891 2.48568 2.83334 3.19294 3.27755 3.33812 3.93294 4.06087 4.10626 4.26356 4.34595 4.55365 4.69497 4.87181 4.91457 4.95643 5.05588 5.06434 5.13310 5.18074 5.26076 5.26904 5.29345 5.33689 5.42215 5.47986 5.52272 5.56189 5.70990 5.76257 5.79330 5.83738 5.92464 5.99955 6.03338 6.08974 6.28875 6.33084 6.63260 6.71282 7.11558 7.29332 7.40888 7.57329 7.94354 8.08836 8.64415 9.20469 9.57011 10.09098 10.78187 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.027690 B = 0.001938 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.954202 B =14440.691645 C =14933.209547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.148 4.148 3 C -0.041 4.041 4 O -0.173 6.173 5 C 0.042 3.958 6 C -0.082 4.082 7 C -0.224 4.224 8 C 0.591 3.409 9 O -0.527 6.527 10 N -0.607 5.607 11 C 0.081 3.919 12 C 0.118 3.882 13 C 0.042 3.958 14 N -0.516 5.516 15 C 0.021 3.979 16 C 0.047 3.953 17 C 0.445 3.555 18 O -0.577 6.577 19 N -0.565 5.565 20 C -0.297 4.297 21 H 0.103 0.897 22 C 0.021 3.979 23 N -0.903 5.903 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.207 0.793 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.057 0.943 36 H 0.077 0.923 37 H 0.069 0.931 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.034 0.966 41 H 0.072 0.928 42 H 0.016 0.984 43 H 0.096 0.904 44 H 0.061 0.939 45 H 0.047 0.953 46 H 0.087 0.913 47 H 0.392 0.608 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.586 28.389 -1.576 28.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.150 4.150 3 C -0.107 4.107 4 O -0.069 6.069 5 C -0.010 4.010 6 C -0.139 4.139 7 C -0.228 4.228 8 C 0.378 3.622 9 O -0.403 6.403 10 N -0.340 5.340 11 C -0.062 4.062 12 C -0.005 4.005 13 C -0.088 4.088 14 N -0.240 5.240 15 C -0.127 4.127 16 C -0.084 4.084 17 C 0.230 3.770 18 O -0.461 6.461 19 N -0.202 5.202 20 C -0.427 4.427 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.757 3.243 25 H -0.205 1.205 26 H -0.210 1.210 27 H -0.194 1.194 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.223 0.777 32 H 0.102 0.898 33 H 0.108 0.892 34 H 0.110 0.890 35 H 0.076 0.924 36 H 0.096 0.904 37 H 0.087 0.913 38 H 0.108 0.892 39 H 0.106 0.894 40 H 0.052 0.948 41 H 0.091 0.909 42 H 0.034 0.966 43 H 0.114 0.886 44 H 0.080 0.920 45 H 0.065 0.935 46 H 0.105 0.895 47 H 0.225 0.775 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.417 27.870 -1.714 28.131 hybrid contribution 0.872 -0.566 -0.401 1.114 sum -2.544 27.305 -2.115 27.505 Atomic orbital electron populations 1.20192 0.88602 1.02778 1.02653 1.21337 0.96821 0.90477 1.06324 1.23616 0.79612 0.99508 1.07958 1.83731 1.29581 1.21857 1.71729 1.22522 0.96011 0.80778 1.01692 1.20471 0.91070 0.97839 1.04480 1.20960 0.93237 0.93953 1.14655 1.17381 0.76661 0.84699 0.83470 1.90827 1.50264 1.67728 1.31451 1.47808 1.68432 1.11695 1.06057 1.21787 1.01677 0.97404 0.85370 1.21525 0.96851 0.77690 1.04405 1.22426 0.96722 0.88776 1.00833 1.61528 1.25642 1.00609 1.36238 1.22580 0.97647 1.04424 0.88050 1.21854 0.91902 0.93606 1.01059 1.19725 0.87052 0.85809 0.84372 1.90483 1.16361 1.82982 1.56237 1.41864 1.08544 1.07614 1.62173 1.19697 0.94830 0.83299 1.44870 0.87908 1.25262 0.94927 1.00350 0.97500 1.69612 1.00686 1.34376 1.49740 0.85856 0.78542 0.81643 0.78240 1.20458 1.20965 1.19415 0.90959 0.91089 0.91466 0.77662 0.89753 0.89160 0.88977 0.92420 0.90450 0.91253 0.89170 0.89435 0.94776 0.90936 0.96565 0.88570 0.92040 0.93475 0.89496 0.77517 0.91919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.62 10.38 36.01 0.37 -0.24 16 2 C -0.15 -1.33 6.38 -102.49 -0.65 -1.98 16 3 C -0.04 -0.30 11.96 29.30 0.35 0.05 16 4 O -0.17 -1.54 10.52 7.66 0.08 -1.46 16 5 C 0.04 0.40 7.05 -34.96 -0.25 0.15 16 6 C -0.08 -0.59 10.18 36.01 0.37 -0.22 16 7 C -0.22 -2.43 4.32 -103.28 -0.45 -2.88 16 8 C 0.59 7.64 7.27 -12.54 -0.09 7.55 16 9 O -0.53 -8.91 16.69 5.26 0.09 -8.83 16 10 N -0.61 -6.62 2.87 -182.87 -0.53 -7.14 16 11 C 0.08 0.61 10.26 59.85 0.61 1.23 16 12 C 0.12 1.46 5.33 -4.04 -0.02 1.43 16 13 C 0.04 0.57 5.28 -3.83 -0.02 0.55 16 14 N -0.52 -8.86 4.50 -244.38 -1.10 -9.96 16 15 C 0.02 0.36 8.96 60.07 0.54 0.90 16 16 C 0.05 0.86 5.45 -4.97 -0.03 0.84 16 17 C 0.45 10.60 7.48 -10.99 -0.08 10.52 16 18 O -0.58 -15.59 13.91 5.55 0.08 -15.51 16 19 N -0.57 -14.42 5.29 -10.96 -0.06 -14.48 16 20 C -0.30 -8.32 9.68 -14.93 -0.14 -8.47 16 21 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 22 C 0.02 0.56 5.50 -17.46 -0.10 0.47 16 23 N -0.90 -24.66 13.05 55.50 0.72 -23.94 16 24 Si 0.93 21.17 29.55 -169.99 -5.02 16.14 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 26 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 27 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.21 0.69 8.06 -52.49 -0.42 0.27 16 32 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.08 0.51 8.07 -51.93 -0.42 0.09 16 37 H 0.07 0.49 6.63 -51.93 -0.34 0.14 16 38 H 0.09 1.04 8.07 -51.93 -0.42 0.62 16 39 H 0.09 1.24 5.83 -51.93 -0.30 0.94 16 40 H 0.03 0.50 8.12 -51.93 -0.42 0.08 16 41 H 0.07 0.88 7.93 -51.93 -0.41 0.47 16 42 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 43 H 0.10 1.98 5.82 -51.93 -0.30 1.68 16 44 H 0.06 0.97 6.47 -51.93 -0.34 0.64 16 45 H 0.05 0.81 8.12 -51.93 -0.42 0.39 16 46 H 0.09 1.41 7.93 -51.93 -0.41 1.00 16 47 H 0.39 9.56 7.90 -40.82 -0.32 9.24 16 48 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 402.73 15.07 6.07 6.07 Total: -1.00 -34.78 402.73 -6.68 -41.46 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -7.43 Total: 7.75 kcal Atomic # 6 Polarization: 9.48 SS G_CDS: 0.41 Total: 9.89 kcal Atomic # 7 Polarization: -54.56 SS G_CDS: -0.96 Total: -55.52 kcal Atomic # 8 Polarization: -26.05 SS G_CDS: 0.25 Total: -25.80 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.78 -6.68 -41.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496696727.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.432 kcal (2) G-P(sol) polarization free energy of solvation -34.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds