Wall clock time and date at job start Tue Mar 31 2020 20:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34181 * 127.02059 * 2 1 4 4 O 1.34214 * 109.12131 * 180.02562 * 3 2 1 5 5 C 1.33649 * 110.91059 * 359.97438 * 4 3 2 6 6 C 1.50708 * 125.80370 * 180.02562 * 5 4 3 7 7 C 1.36421 * 108.39581 * 359.71469 * 5 4 3 8 8 C 1.47381 * 127.18938 * 180.30663 * 7 5 4 9 9 O 1.21616 * 119.99873 * 270.14460 * 8 7 5 10 10 N 1.34771 * 120.00204 * 90.15313 * 8 7 5 11 11 C 1.46503 * 119.99979 * 359.97438 * 10 8 7 12 12 C 1.46500 * 120.00275 * 179.97438 * 10 8 7 13 13 C 1.52999 * 109.47265 * 89.99723 * 12 10 8 14 14 N 1.46898 * 109.47105 * 180.02562 * 13 12 10 15 15 C 1.46902 * 111.00011 * 66.04914 * 14 13 12 16 16 C 1.46901 * 110.99929 * 189.99555 * 14 13 12 17 17 C 1.50701 * 109.47118 * 170.00132 * 16 14 13 18 18 O 1.21293 * 119.99860 * 0.02562 * 17 16 14 19 19 N 1.34775 * 120.00264 * 180.02562 * 17 16 14 20 20 C 1.37094 * 119.99986 * 180.02562 * 19 17 16 21 21 H 1.07998 * 120.00128 * 359.97438 * 20 19 17 22 22 C 1.38957 * 119.99864 * 179.97438 * 20 19 17 23 23 N 1.31413 * 119.99921 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00077 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47459 * 89.99795 * 24 22 20 26 26 H 1.48501 * 109.46947 * 210.00395 * 24 22 20 27 27 H 1.48501 * 109.46763 * 329.99684 * 24 22 20 28 28 H 1.09002 * 109.47152 * 90.02784 * 1 2 3 29 29 H 1.09001 * 109.46980 * 330.02885 * 1 2 3 30 30 H 1.09004 * 109.47113 * 210.02866 * 1 2 3 31 31 H 1.07997 * 125.43877 * 359.97438 * 3 2 1 32 32 H 1.08994 * 109.46602 * 359.96874 * 6 5 4 33 33 H 1.08995 * 109.46976 * 119.97260 * 6 5 4 34 34 H 1.09000 * 109.46962 * 239.97224 * 6 5 4 35 35 H 1.08995 * 109.47430 * 89.99888 * 11 10 8 36 36 H 1.09003 * 109.46760 * 210.00456 * 11 10 8 37 37 H 1.08998 * 109.46916 * 329.99662 * 11 10 8 38 38 H 1.09003 * 109.47421 * 210.00103 * 12 10 8 39 39 H 1.08999 * 109.47205 * 329.99628 * 12 10 8 40 40 H 1.08996 * 109.47139 * 300.00163 * 13 12 10 41 41 H 1.08999 * 109.47087 * 59.99832 * 13 12 10 42 42 H 1.08997 * 109.47169 * 59.99384 * 15 14 13 43 43 H 1.08996 * 109.47491 * 180.02562 * 15 14 13 44 44 H 1.09003 * 109.46858 * 299.99434 * 15 14 13 45 45 H 1.08990 * 109.47611 * 290.00439 * 16 14 13 46 46 H 1.09007 * 109.46690 * 50.00487 * 16 14 13 47 47 H 0.96997 * 119.99774 * 359.97438 * 19 17 16 48 48 H 0.96996 * 120.00360 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3149 1.0713 0.0000 4 8 3.5921 0.6588 -0.0006 5 6 3.6623 -0.6758 -0.0004 6 6 4.9292 -1.4920 -0.0003 7 6 2.3922 -1.1737 0.0068 8 6 1.9914 -2.5920 0.0158 9 8 1.8249 -3.1835 -1.0336 10 7 1.8093 -3.2333 1.1871 11 6 2.0102 -2.5208 2.4513 12 6 1.4103 -4.6429 1.1961 13 6 2.6594 -5.5265 1.2000 14 7 2.2593 -6.9399 1.2084 15 6 1.5790 -7.3020 -0.0423 16 6 3.4157 -7.8129 1.4503 17 6 2.9391 -9.2213 1.6961 18 8 1.7529 -9.4731 1.6717 19 7 3.8310 -10.2011 1.9431 20 6 3.3975 -11.4824 2.1662 21 1 2.3412 -11.7066 2.1444 22 6 4.3171 -12.4927 2.4203 23 7 5.6023 -12.2200 2.4463 24 14 3.7264 -14.2387 2.7236 25 1 3.6554 -14.9686 1.4324 26 1 4.6751 -14.9313 3.6323 27 1 2.3793 -14.2041 3.3475 28 1 -0.3633 -0.0005 -1.0277 29 1 -0.3633 0.8903 0.5134 30 1 -0.3633 -0.8898 0.5143 31 1 1.9895 2.1011 -0.0004 32 1 5.7911 -0.8249 -0.0010 33 1 4.9566 -2.1203 0.8899 34 1 4.9561 -2.1212 -0.8900 35 1 1.0713 -2.0642 2.7643 36 1 2.3451 -3.2230 3.2148 37 1 2.7639 -1.7452 2.3154 38 1 0.8179 -4.8472 2.0880 39 1 0.8159 -4.8580 0.3082 40 1 3.2516 -5.3222 0.3081 41 1 3.2538 -5.3114 2.0879 42 1 2.2515 -7.1340 -0.8834 43 1 1.2932 -8.3533 -0.0093 44 1 0.6870 -6.6870 -0.1618 45 1 4.0709 -7.7978 0.5795 46 1 3.9632 -7.4571 2.3232 47 1 4.7797 -9.9998 1.9623 48 1 6.2443 -12.9250 2.6241 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496696727.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:16:03 Heat of formation + Delta-G solvation = -69.563524 kcal Electronic energy + Delta-G solvation = -29093.452097 eV Core-core repulsion = 24956.670384 eV Total energy + Delta-G solvation = -4136.781713 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -43.56931 -40.90457 -40.29682 -38.13152 -36.51889 -35.82294 -34.91249 -33.52329 -33.27301 -31.22644 -29.32168 -28.99689 -27.80613 -27.47291 -26.88694 -25.73221 -23.63798 -22.15963 -21.00841 -20.83296 -20.06212 -19.83442 -18.58343 -17.90772 -17.78254 -17.14264 -16.91344 -16.66942 -16.43509 -16.26702 -16.05442 -15.60752 -15.40090 -15.06747 -14.83252 -14.48114 -14.25790 -14.20769 -14.08640 -13.93004 -13.84139 -13.77366 -13.58108 -13.45142 -13.31326 -13.25340 -13.05381 -12.97978 -12.61691 -12.55526 -12.39691 -12.30447 -12.11425 -11.89481 -11.45463 -11.28047 -10.41814 -10.33579 -9.99351 -9.81960 -9.43715 -9.29936 -8.45494 -5.93870 0.60575 1.22324 1.34965 1.38467 1.42178 1.54935 1.79548 2.03516 2.05994 2.30147 2.83261 3.21074 3.40280 3.48913 3.56292 3.86750 3.97404 4.06317 4.18647 4.21349 4.27914 4.34729 4.36274 4.44697 4.50561 4.51850 4.55965 4.57142 4.61866 4.66121 4.72977 4.73265 4.78989 4.86832 4.89833 4.96597 5.01224 5.15659 5.18005 5.38254 5.42415 5.46522 5.83098 6.02116 6.07307 6.12486 6.23939 6.61812 6.99756 7.14171 7.57446 8.13386 8.71953 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.027690 B = 0.001938 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.954202 B =14440.691645 C =14933.209547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.170 4.170 3 C -0.026 4.026 4 O -0.177 6.177 5 C 0.040 3.960 6 C -0.083 4.083 7 C -0.250 4.250 8 C 0.591 3.409 9 O -0.579 6.579 10 N -0.600 5.600 11 C 0.078 3.922 12 C 0.123 3.877 13 C 0.051 3.949 14 N -0.527 5.527 15 C 0.029 3.971 16 C 0.058 3.942 17 C 0.442 3.558 18 O -0.613 6.613 19 N -0.574 5.574 20 C -0.331 4.331 21 H 0.079 0.921 22 C -0.014 4.014 23 N -0.921 5.921 24 Si 0.993 3.007 25 H -0.272 1.272 26 H -0.270 1.270 27 H -0.273 1.273 28 H 0.065 0.935 29 H 0.098 0.902 30 H 0.052 0.948 31 H 0.247 0.753 32 H 0.103 0.897 33 H 0.099 0.901 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.092 0.908 37 H 0.077 0.923 38 H 0.103 0.897 39 H 0.065 0.935 40 H 0.026 0.974 41 H 0.096 0.904 42 H 0.019 0.981 43 H 0.061 0.939 44 H 0.074 0.926 45 H 0.062 0.938 46 H 0.116 0.884 47 H 0.396 0.604 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.788 30.357 -0.369 30.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.172 4.172 3 C -0.091 4.091 4 O -0.073 6.073 5 C -0.012 4.012 6 C -0.139 4.139 7 C -0.254 4.254 8 C 0.380 3.620 9 O -0.459 6.459 10 N -0.331 5.331 11 C -0.064 4.064 12 C 0.000 4.000 13 C -0.078 4.078 14 N -0.252 5.252 15 C -0.119 4.119 16 C -0.073 4.073 17 C 0.230 3.770 18 O -0.499 6.499 19 N -0.212 5.212 20 C -0.460 4.460 21 H 0.097 0.903 22 C -0.214 4.214 23 N -0.562 5.562 24 Si 0.817 3.183 25 H -0.198 1.198 26 H -0.195 1.195 27 H -0.197 1.197 28 H 0.084 0.916 29 H 0.117 0.883 30 H 0.071 0.929 31 H 0.263 0.737 32 H 0.122 0.878 33 H 0.118 0.882 34 H 0.099 0.901 35 H 0.087 0.913 36 H 0.111 0.889 37 H 0.096 0.904 38 H 0.121 0.879 39 H 0.084 0.916 40 H 0.044 0.956 41 H 0.114 0.886 42 H 0.038 0.962 43 H 0.080 0.920 44 H 0.092 0.908 45 H 0.080 0.920 46 H 0.134 0.866 47 H 0.230 0.770 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.595 29.876 -0.473 29.992 hybrid contribution 0.597 -1.081 -0.775 1.458 sum -1.999 28.795 -1.248 28.891 Atomic orbital electron populations 1.20201 0.87772 1.03473 1.02469 1.21603 0.97645 0.90303 1.07649 1.24359 0.78572 1.00739 1.05478 1.83758 1.30485 1.21465 1.71564 1.22820 0.96209 0.81158 1.01021 1.20554 0.90997 0.98002 1.04367 1.20979 0.94587 0.93260 1.16619 1.17727 0.75736 0.85452 0.83125 1.90791 1.52774 1.69000 1.33296 1.47850 1.67312 1.11070 1.06880 1.22004 1.02704 0.97777 0.83927 1.21373 0.96195 0.78506 1.03924 1.22426 0.97362 0.86525 1.01480 1.61491 1.25476 1.02287 1.35935 1.22412 0.98459 1.02428 0.88617 1.21748 0.92395 0.90232 1.02893 1.20699 0.86370 0.87587 0.82384 1.90464 1.18051 1.84084 1.57277 1.41923 1.08958 1.07432 1.62864 1.19653 0.94146 0.85090 1.47141 0.90282 1.26040 0.94999 1.03761 0.96605 1.69671 1.01324 1.35697 1.49492 0.84927 0.78036 0.76968 0.78402 1.19802 1.19509 1.19744 0.91590 0.88287 0.92852 0.73749 0.87800 0.88223 0.90052 0.91258 0.88906 0.90432 0.87915 0.91643 0.95616 0.88581 0.96249 0.92018 0.90755 0.92004 0.86621 0.77033 0.91339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.09 10.38 71.24 0.74 -0.35 16 2 C -0.17 -2.81 6.38 -18.49 -0.12 -2.93 16 3 C -0.03 -0.31 11.96 66.89 0.80 0.49 16 4 O -0.18 -2.77 10.52 4.51 0.05 -2.72 16 5 C 0.04 0.70 7.05 25.26 0.18 0.88 16 6 C -0.08 -1.08 10.18 71.24 0.72 -0.36 16 7 C -0.25 -5.26 4.32 -18.99 -0.08 -5.35 16 8 C 0.59 15.31 7.27 86.65 0.63 15.94 16 9 O -0.58 -20.30 16.69 -4.08 -0.07 -20.37 16 10 N -0.60 -12.50 2.87 -850.72 -2.44 -14.95 16 11 C 0.08 1.01 10.26 127.77 1.31 2.32 16 12 C 0.12 2.95 5.33 86.38 0.46 3.41 16 13 C 0.05 1.31 5.28 86.30 0.46 1.77 16 14 N -0.53 -17.74 4.50 -927.07 -4.17 -21.91 16 15 C 0.03 1.03 8.96 127.69 1.14 2.18 16 16 C 0.06 2.08 5.45 85.56 0.47 2.55 16 17 C 0.44 21.32 7.48 87.66 0.66 21.98 16 18 O -0.61 -34.08 13.91 -3.07 -0.04 -34.13 16 19 N -0.57 -29.73 5.29 -306.98 -1.62 -31.36 16 20 C -0.33 -18.90 9.68 84.04 0.81 -18.09 16 21 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 22 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 23 N -0.92 -49.91 13.05 21.67 0.28 -49.63 16 24 Si 0.99 43.26 29.55 68.60 2.03 45.29 16 25 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 26 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 27 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 28 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 31 H 0.25 0.65 8.06 -2.91 -0.02 0.62 16 32 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.09 0.94 8.07 -2.39 -0.02 0.92 16 37 H 0.08 0.92 6.63 -2.39 -0.02 0.90 16 38 H 0.10 2.21 8.07 -2.39 -0.02 2.19 16 39 H 0.07 1.88 5.83 -2.39 -0.01 1.87 16 40 H 0.03 0.72 8.12 -2.39 -0.02 0.70 16 41 H 0.10 2.05 7.93 -2.39 -0.02 2.03 16 42 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.06 2.64 5.82 -2.39 -0.01 2.63 16 44 H 0.07 2.41 6.47 -2.39 -0.02 2.40 16 45 H 0.06 2.05 8.12 -2.39 -0.02 2.03 16 46 H 0.12 3.48 7.93 -2.38 -0.02 3.46 16 47 H 0.40 19.44 7.90 -92.71 -0.73 18.71 16 48 H 0.28 14.06 8.31 -92.71 -0.77 13.29 16 Total: -1.00 -77.54 402.73 2.90 -74.64 By element: Atomic # 1 Polarization: 30.78 SS G_CDS: 0.24 Total: 31.02 kcal Atomic # 6 Polarization: 15.47 SS G_CDS: 8.65 Total: 24.12 kcal Atomic # 7 Polarization: -109.89 SS G_CDS: -7.96 Total: -117.85 kcal Atomic # 8 Polarization: -57.16 SS G_CDS: -0.06 Total: -57.22 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -77.54 2.90 -74.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496696727.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.074 kcal (2) G-P(sol) polarization free energy of solvation -77.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds