Wall clock time and date at job start Tue Mar 31 2020 21:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50704 * 109.47230 * 2 1 4 4 O 1.33648 * 125.80024 * 270.33073 * 3 2 1 5 5 C 1.34220 * 110.90418 * 180.12925 * 4 3 2 6 6 C 1.34171 * 109.12740 * 359.58246 * 5 4 3 7 7 C 1.36413 * 125.79841 * 89.99896 * 3 2 1 8 8 C 1.47382 * 127.19721 * 0.02562 * 7 3 2 9 9 O 1.21613 * 119.99683 * 321.29088 * 8 7 3 10 10 N 1.34775 * 120.00126 * 141.29276 * 8 7 3 11 11 C 1.46493 * 120.00091 * 5.18530 * 10 8 7 12 12 C 1.46503 * 119.99452 * 185.19246 * 10 8 7 13 13 C 1.52998 * 109.47510 * 89.99728 * 12 10 8 14 14 N 1.46893 * 109.47066 * 179.97438 * 13 12 10 15 15 C 1.46901 * 111.00370 * 66.04423 * 14 13 12 16 16 C 1.46904 * 110.99932 * 190.00074 * 14 13 12 17 17 C 1.50698 * 109.47292 * 169.99934 * 16 14 13 18 18 O 1.21298 * 120.00033 * 359.97438 * 17 16 14 19 19 N 1.34775 * 120.00151 * 179.97438 * 17 16 14 20 20 C 1.37098 * 120.00270 * 180.02562 * 19 17 16 21 21 H 1.08005 * 119.99537 * 359.97438 * 20 19 17 22 22 C 1.38943 * 120.00231 * 179.97438 * 20 19 17 23 23 N 1.31413 * 120.00343 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00152 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47069 * 0.02562 * 24 22 20 26 26 H 1.48493 * 109.47278 * 120.00141 * 24 22 20 27 27 H 1.48502 * 109.47449 * 240.00621 * 24 22 20 28 28 H 1.09006 * 109.46849 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47046 * 299.99521 * 1 2 3 30 30 H 1.08996 * 109.47428 * 59.99989 * 1 2 3 31 31 H 1.08999 * 109.47452 * 240.00489 * 2 1 3 32 32 H 1.08996 * 109.47428 * 120.00011 * 2 1 3 33 33 H 1.08004 * 125.43523 * 179.85209 * 5 4 3 34 34 H 1.07999 * 127.02613 * 180.24517 * 6 5 4 35 35 H 1.08998 * 109.47216 * 84.55358 * 11 10 8 36 36 H 1.09005 * 109.47144 * 204.55471 * 11 10 8 37 37 H 1.09001 * 109.47173 * 324.55294 * 11 10 8 38 38 H 1.09011 * 109.46498 * 209.99633 * 12 10 8 39 39 H 1.09000 * 109.47342 * 329.99238 * 12 10 8 40 40 H 1.08997 * 109.46750 * 299.99925 * 13 12 10 41 41 H 1.09000 * 109.47218 * 59.99434 * 13 12 10 42 42 H 1.09003 * 109.46676 * 60.00124 * 15 14 13 43 43 H 1.08997 * 109.47547 * 179.97438 * 15 14 13 44 44 H 1.08996 * 109.47067 * 300.00032 * 15 14 13 45 45 H 1.08999 * 109.47277 * 289.99701 * 16 14 13 46 46 H 1.09004 * 109.47020 * 49.99947 * 16 14 13 47 47 H 0.97001 * 120.00195 * 359.97438 * 19 17 16 48 48 H 0.96995 * 120.00735 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2871 2.1600 -1.0839 5 6 2.7240 3.3813 -0.7389 6 6 2.7574 3.4745 0.5991 7 6 2.2983 2.1731 1.1064 8 6 2.1551 1.7666 2.5158 9 8 1.2132 1.0772 2.8570 10 7 3.0680 2.1589 3.4264 11 6 4.1384 3.0814 3.0401 12 6 2.9897 1.6627 4.8026 13 6 3.7990 0.3701 4.9256 14 7 3.7210 -0.1271 6.3056 15 6 2.3512 -0.5392 6.6402 16 6 4.6697 -1.2273 6.5233 17 6 4.7404 -1.5461 7.9944 18 8 4.0670 -0.9182 8.7841 19 7 5.5518 -2.5289 8.4328 20 6 5.6158 -2.8193 9.7711 21 1 5.0161 -2.2601 10.4742 22 6 6.4519 -3.8328 10.2230 23 7 7.1819 -4.5128 9.3676 24 14 6.5395 -4.2280 12.0466 25 1 5.6273 -3.3248 12.7932 26 1 6.1295 -5.6379 12.2678 27 1 7.9309 -4.0356 12.5286 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.0001 4.1655 -1.4284 34 1 3.0598 4.3305 1.1841 35 1 3.7755 4.1070 3.1058 36 1 4.9883 2.9529 3.7104 37 1 4.4480 2.8704 2.0164 38 1 3.3959 2.4117 5.4825 39 1 1.9488 1.4655 5.0592 40 1 3.3929 -0.3788 4.2457 41 1 4.8398 0.5673 4.6690 42 1 2.0356 -1.3338 5.9641 43 1 2.3219 -0.9034 7.6671 44 1 1.6800 0.3134 6.5374 45 1 4.3356 -2.1088 5.9762 46 1 5.6568 -0.9315 6.1677 47 1 6.0901 -3.0313 7.8013 48 1 7.7658 -5.2201 9.6830 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496700925.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:56 Heat of formation + Delta-G solvation = -43.331902 kcal Electronic energy + Delta-G solvation = -29020.059570 eV Core-core repulsion = 24884.415346 eV Total energy + Delta-G solvation = -4135.644225 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.94155 -39.86990 -38.54636 -36.72706 -35.48330 -34.36905 -33.83545 -33.10526 -31.22698 -30.02566 -29.08410 -27.65922 -26.96656 -25.58596 -24.52210 -23.73974 -22.72696 -21.57869 -20.69580 -19.19009 -19.03122 -17.86735 -17.79328 -16.67768 -16.54530 -16.34244 -16.04344 -15.36535 -15.21668 -14.90406 -14.66920 -14.52037 -14.45183 -13.93612 -13.76412 -13.64580 -13.42455 -13.19674 -13.07994 -12.90700 -12.77936 -12.55980 -12.30812 -12.06317 -12.01570 -11.83788 -11.49059 -11.31341 -11.27639 -11.19301 -10.91370 -10.74119 -10.32446 -10.24666 -10.20328 -9.98723 -9.46326 -9.02210 -8.83651 -8.38914 -7.95318 -7.82608 -6.39528 -3.80144 1.14135 1.73594 2.43437 2.69331 2.98074 3.17852 3.28256 3.35660 3.93485 4.08039 4.12242 4.28173 4.36679 4.54279 4.73317 4.90290 4.93508 4.95473 5.01065 5.08403 5.11378 5.18705 5.26059 5.27528 5.30910 5.44684 5.53970 5.56627 5.63810 5.71475 5.71787 5.78164 5.83609 5.92045 5.94342 6.00712 6.01711 6.09155 6.30270 6.35147 6.63556 6.69038 7.16786 7.30028 7.41764 7.57672 7.99099 8.09251 8.64545 9.20727 9.57251 10.09247 10.78401 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.023272 B = 0.001938 C = 0.001903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.882800 B =14442.573695 C =14710.615201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.046 4.046 3 C 0.071 3.929 4 O -0.175 6.175 5 C -0.040 4.040 6 C -0.188 4.188 7 C -0.237 4.237 8 C 0.588 3.412 9 O -0.531 6.531 10 N -0.608 5.608 11 C 0.076 3.924 12 C 0.118 3.882 13 C 0.042 3.958 14 N -0.516 5.516 15 C 0.021 3.979 16 C 0.047 3.953 17 C 0.445 3.555 18 O -0.576 6.576 19 N -0.566 5.566 20 C -0.297 4.297 21 H 0.104 0.896 22 C 0.021 3.979 23 N -0.903 5.903 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.054 0.946 31 H 0.083 0.917 32 H 0.098 0.902 33 H 0.207 0.793 34 H 0.159 0.841 35 H 0.056 0.944 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.033 0.967 41 H 0.072 0.928 42 H 0.015 0.985 43 H 0.096 0.904 44 H 0.061 0.939 45 H 0.047 0.953 46 H 0.087 0.913 47 H 0.392 0.608 48 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.488 14.381 -23.580 28.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.083 4.083 3 C 0.018 3.982 4 O -0.071 6.071 5 C -0.106 4.106 6 C -0.208 4.208 7 C -0.241 4.241 8 C 0.377 3.623 9 O -0.408 6.408 10 N -0.341 5.341 11 C -0.067 4.067 12 C -0.004 4.004 13 C -0.087 4.087 14 N -0.240 5.240 15 C -0.127 4.127 16 C -0.084 4.084 17 C 0.231 3.769 18 O -0.460 6.460 19 N -0.202 5.202 20 C -0.426 4.426 21 H 0.122 0.878 22 C -0.181 4.181 23 N -0.544 5.544 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.208 1.208 28 H 0.086 0.914 29 H 0.091 0.909 30 H 0.073 0.927 31 H 0.102 0.898 32 H 0.117 0.883 33 H 0.224 0.776 34 H 0.176 0.824 35 H 0.075 0.925 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.051 0.949 41 H 0.090 0.910 42 H 0.034 0.966 43 H 0.114 0.886 44 H 0.080 0.920 45 H 0.065 0.935 46 H 0.105 0.895 47 H 0.225 0.775 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.212 14.584 -22.776 27.990 hybrid contribution 0.595 -0.880 0.006 1.062 sum -6.617 13.705 -22.770 27.387 Atomic orbital electron populations 1.21747 0.92935 1.02813 1.02954 1.20242 0.97400 0.86329 1.04369 1.22755 0.97756 0.94601 0.83050 1.83762 1.65257 1.23182 1.34901 1.23882 1.04053 0.86257 0.96378 1.22973 1.05565 0.97879 0.94344 1.21122 1.12973 0.96214 0.93801 1.17315 0.81809 0.79362 0.83846 1.90801 1.30996 1.38621 1.80403 1.47644 1.28793 1.46929 1.10744 1.22002 0.90232 0.92571 1.01872 1.21511 1.02378 0.95986 0.80529 1.22429 1.00305 0.96235 0.89736 1.61522 1.06709 1.34923 1.20876 1.22578 0.88044 0.98861 1.03190 1.21856 0.97019 0.92835 0.96722 1.19727 0.84483 0.83588 0.89126 1.90485 1.46333 1.52766 1.56463 1.41875 1.38495 1.31006 1.08866 1.19748 1.23418 1.16064 0.83385 0.87850 1.25261 0.96268 0.96369 1.00171 1.69619 1.27106 1.23045 1.34658 0.85802 0.78063 0.78241 0.82250 1.19217 1.20814 1.20783 0.91376 0.90922 0.92654 0.89825 0.88331 0.77600 0.82371 0.92547 0.90525 0.90706 0.89294 0.89291 0.94895 0.90977 0.96608 0.88597 0.91988 0.93486 0.89502 0.77519 0.91969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.89 37.16 0.37 -0.89 16 2 C -0.05 -0.41 5.93 -27.88 -0.17 -0.57 16 3 C 0.07 0.71 6.62 -34.96 -0.23 0.48 16 4 O -0.17 -1.56 10.52 7.65 0.08 -1.47 16 5 C -0.04 -0.26 12.03 29.30 0.35 0.09 16 6 C -0.19 -1.42 8.84 -37.45 -0.33 -1.75 16 7 C -0.24 -2.50 5.44 -103.27 -0.56 -3.06 16 8 C 0.59 7.45 7.32 -12.54 -0.09 7.36 16 9 O -0.53 -8.30 15.31 5.27 0.08 -8.22 16 10 N -0.61 -6.70 2.87 -182.86 -0.53 -7.22 16 11 C 0.08 0.57 9.10 59.84 0.54 1.11 16 12 C 0.12 1.48 5.35 -4.04 -0.02 1.46 16 13 C 0.04 0.59 5.28 -3.83 -0.02 0.57 16 14 N -0.52 -8.92 4.50 -244.38 -1.10 -10.02 16 15 C 0.02 0.37 8.96 60.06 0.54 0.91 16 16 C 0.05 0.87 5.45 -4.97 -0.03 0.84 16 17 C 0.45 10.65 7.47 -10.99 -0.08 10.57 16 18 O -0.58 -15.63 13.91 5.54 0.08 -15.55 16 19 N -0.57 -14.48 5.29 -10.96 -0.06 -14.53 16 20 C -0.30 -8.32 9.68 -14.94 -0.14 -8.46 16 21 H 0.10 3.04 7.16 -52.48 -0.38 2.67 16 22 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 23 N -0.90 -24.73 13.05 55.50 0.72 -24.01 16 24 Si 0.93 21.19 29.55 -169.99 -5.02 16.17 16 25 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 27 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.78 7.56 -51.93 -0.39 0.39 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.10 0.97 7.65 -51.93 -0.40 0.57 16 33 H 0.21 0.49 8.06 -52.48 -0.42 0.07 16 34 H 0.16 0.85 6.66 -52.49 -0.35 0.50 16 35 H 0.06 0.33 7.42 -51.93 -0.39 -0.05 16 36 H 0.08 0.52 8.03 -51.93 -0.42 0.10 16 37 H 0.07 0.51 5.92 -51.93 -0.31 0.20 16 38 H 0.09 1.04 8.07 -51.92 -0.42 0.62 16 39 H 0.09 1.26 5.77 -51.93 -0.30 0.96 16 40 H 0.03 0.48 8.12 -51.93 -0.42 0.06 16 41 H 0.07 0.91 7.93 -51.93 -0.41 0.50 16 42 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 43 H 0.10 1.98 5.82 -51.93 -0.30 1.68 16 44 H 0.06 0.98 6.47 -51.93 -0.34 0.64 16 45 H 0.05 0.82 8.12 -51.93 -0.42 0.39 16 46 H 0.09 1.44 7.93 -51.93 -0.41 1.02 16 47 H 0.39 9.60 7.90 -40.82 -0.32 9.28 16 48 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 394.68 15.07 5.95 5.95 Total: -1.00 -34.08 394.68 -6.99 -41.06 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: -7.22 Total: 8.76 kcal Atomic # 6 Polarization: 9.07 SS G_CDS: 0.03 Total: 9.10 kcal Atomic # 7 Polarization: -54.83 SS G_CDS: -0.96 Total: -55.79 kcal Atomic # 8 Polarization: -25.48 SS G_CDS: 0.24 Total: -25.24 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.08 -6.99 -41.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496700925.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.270 kcal (2) G-P(sol) polarization free energy of solvation -34.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds