Wall clock time and date at job start Tue Mar 31 2020 21:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50704 * 109.47230 * 2 1 4 4 O 1.33648 * 125.80024 * 270.33073 * 3 2 1 5 5 C 1.34220 * 110.90418 * 180.12925 * 4 3 2 6 6 C 1.34171 * 109.12740 * 359.58246 * 5 4 3 7 7 C 1.36413 * 125.79841 * 89.99896 * 3 2 1 8 8 C 1.47382 * 127.19721 * 0.02562 * 7 3 2 9 9 O 1.21613 * 119.99683 * 321.29088 * 8 7 3 10 10 N 1.34775 * 120.00126 * 141.29276 * 8 7 3 11 11 C 1.46493 * 120.00091 * 5.18530 * 10 8 7 12 12 C 1.46503 * 119.99452 * 185.19246 * 10 8 7 13 13 C 1.52998 * 109.47510 * 89.99728 * 12 10 8 14 14 N 1.46893 * 109.47066 * 179.97438 * 13 12 10 15 15 C 1.46901 * 111.00370 * 66.04423 * 14 13 12 16 16 C 1.46904 * 110.99932 * 190.00074 * 14 13 12 17 17 C 1.50698 * 109.47292 * 169.99934 * 16 14 13 18 18 O 1.21298 * 120.00033 * 359.97438 * 17 16 14 19 19 N 1.34775 * 120.00151 * 179.97438 * 17 16 14 20 20 C 1.37098 * 120.00270 * 180.02562 * 19 17 16 21 21 H 1.08005 * 119.99537 * 359.97438 * 20 19 17 22 22 C 1.38943 * 120.00231 * 179.97438 * 20 19 17 23 23 N 1.31413 * 120.00343 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00152 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47069 * 0.02562 * 24 22 20 26 26 H 1.48493 * 109.47278 * 120.00141 * 24 22 20 27 27 H 1.48502 * 109.47449 * 240.00621 * 24 22 20 28 28 H 1.09006 * 109.46849 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47046 * 299.99521 * 1 2 3 30 30 H 1.08996 * 109.47428 * 59.99989 * 1 2 3 31 31 H 1.08999 * 109.47452 * 240.00489 * 2 1 3 32 32 H 1.08996 * 109.47428 * 120.00011 * 2 1 3 33 33 H 1.08004 * 125.43523 * 179.85209 * 5 4 3 34 34 H 1.07999 * 127.02613 * 180.24517 * 6 5 4 35 35 H 1.08998 * 109.47216 * 84.55358 * 11 10 8 36 36 H 1.09005 * 109.47144 * 204.55471 * 11 10 8 37 37 H 1.09001 * 109.47173 * 324.55294 * 11 10 8 38 38 H 1.09011 * 109.46498 * 209.99633 * 12 10 8 39 39 H 1.09000 * 109.47342 * 329.99238 * 12 10 8 40 40 H 1.08997 * 109.46750 * 299.99925 * 13 12 10 41 41 H 1.09000 * 109.47218 * 59.99434 * 13 12 10 42 42 H 1.09003 * 109.46676 * 60.00124 * 15 14 13 43 43 H 1.08997 * 109.47547 * 179.97438 * 15 14 13 44 44 H 1.08996 * 109.47067 * 300.00032 * 15 14 13 45 45 H 1.08999 * 109.47277 * 289.99701 * 16 14 13 46 46 H 1.09004 * 109.47020 * 49.99947 * 16 14 13 47 47 H 0.97001 * 120.00195 * 359.97438 * 19 17 16 48 48 H 0.96995 * 120.00735 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2871 2.1600 -1.0839 5 6 2.7240 3.3813 -0.7389 6 6 2.7574 3.4745 0.5991 7 6 2.2983 2.1731 1.1064 8 6 2.1551 1.7666 2.5158 9 8 1.2132 1.0772 2.8570 10 7 3.0680 2.1589 3.4264 11 6 4.1384 3.0814 3.0401 12 6 2.9897 1.6627 4.8026 13 6 3.7990 0.3701 4.9256 14 7 3.7210 -0.1271 6.3056 15 6 2.3512 -0.5392 6.6402 16 6 4.6697 -1.2273 6.5233 17 6 4.7404 -1.5461 7.9944 18 8 4.0670 -0.9182 8.7841 19 7 5.5518 -2.5289 8.4328 20 6 5.6158 -2.8193 9.7711 21 1 5.0161 -2.2601 10.4742 22 6 6.4519 -3.8328 10.2230 23 7 7.1819 -4.5128 9.3676 24 14 6.5395 -4.2280 12.0466 25 1 5.6273 -3.3248 12.7932 26 1 6.1295 -5.6379 12.2678 27 1 7.9309 -4.0356 12.5286 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.0001 4.1655 -1.4284 34 1 3.0598 4.3305 1.1841 35 1 3.7755 4.1070 3.1058 36 1 4.9883 2.9529 3.7104 37 1 4.4480 2.8704 2.0164 38 1 3.3959 2.4117 5.4825 39 1 1.9488 1.4655 5.0592 40 1 3.3929 -0.3788 4.2457 41 1 4.8398 0.5673 4.6690 42 1 2.0356 -1.3338 5.9641 43 1 2.3219 -0.9034 7.6671 44 1 1.6800 0.3134 6.5374 45 1 4.3356 -2.1088 5.9762 46 1 5.6568 -0.9315 6.1677 47 1 6.0901 -3.0313 7.8013 48 1 7.7658 -5.2201 9.6830 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496700925.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:55 Heat of formation + Delta-G solvation = -67.446582 kcal Electronic energy + Delta-G solvation = -29021.105262 eV Core-core repulsion = 24884.415346 eV Total energy + Delta-G solvation = -4136.689916 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.56807 -40.84988 -40.29157 -38.13276 -36.55553 -35.83030 -35.06234 -33.80050 -33.27788 -31.12285 -29.77856 -29.16584 -27.76685 -27.05637 -25.98861 -24.61779 -23.58297 -22.54182 -21.63470 -20.99851 -19.88890 -19.79007 -18.58122 -17.89266 -17.54690 -17.21299 -17.13688 -16.65824 -16.51231 -16.17618 -16.09696 -15.62968 -15.57028 -15.28855 -15.02395 -14.97538 -14.37229 -14.24757 -14.00350 -13.89690 -13.74212 -13.58332 -13.45819 -13.25582 -13.13619 -13.02376 -12.89827 -12.62255 -12.55639 -12.50115 -12.39215 -12.11055 -11.99155 -11.87267 -11.46420 -11.15870 -10.68213 -10.33882 -9.99825 -9.79849 -9.51003 -9.30119 -8.46047 -5.94544 0.40634 1.17033 1.36812 1.42005 1.56237 1.71241 1.92985 2.05086 2.15168 2.29916 2.83143 3.20474 3.40061 3.55153 3.58521 3.91507 3.94680 4.07096 4.11192 4.21313 4.26174 4.31296 4.34870 4.39350 4.44839 4.49651 4.54736 4.58012 4.61893 4.66368 4.73338 4.80844 4.88692 4.91554 4.94251 4.99764 5.04656 5.16093 5.27996 5.39814 5.42042 5.46314 5.82770 6.02192 6.06636 6.12200 6.33149 6.61107 7.08090 7.13672 7.56694 8.12518 8.71685 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.023272 B = 0.001938 C = 0.001903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.882800 B =14442.573695 C =14710.615201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.047 4.047 3 C 0.058 3.942 4 O -0.181 6.181 5 C -0.028 4.028 6 C -0.196 4.196 7 C -0.258 4.258 8 C 0.581 3.419 9 O -0.573 6.573 10 N -0.605 5.605 11 C 0.071 3.929 12 C 0.125 3.875 13 C 0.052 3.948 14 N -0.528 5.528 15 C 0.029 3.971 16 C 0.058 3.942 17 C 0.443 3.557 18 O -0.612 6.612 19 N -0.575 5.575 20 C -0.330 4.330 21 H 0.079 0.921 22 C -0.015 4.015 23 N -0.921 5.921 24 Si 0.993 3.007 25 H -0.273 1.273 26 H -0.272 1.272 27 H -0.270 1.270 28 H 0.078 0.922 29 H 0.044 0.956 30 H 0.064 0.936 31 H 0.104 0.896 32 H 0.081 0.919 33 H 0.250 0.750 34 H 0.180 0.820 35 H 0.076 0.924 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.100 0.900 39 H 0.068 0.932 40 H 0.024 0.976 41 H 0.091 0.909 42 H 0.020 0.980 43 H 0.061 0.939 44 H 0.075 0.925 45 H 0.062 0.938 46 H 0.114 0.886 47 H 0.396 0.604 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.200 15.637 -25.366 30.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.084 4.084 3 C 0.005 3.995 4 O -0.077 6.077 5 C -0.093 4.093 6 C -0.215 4.215 7 C -0.263 4.263 8 C 0.372 3.628 9 O -0.453 6.453 10 N -0.337 5.337 11 C -0.070 4.070 12 C 0.002 3.998 13 C -0.077 4.077 14 N -0.252 5.252 15 C -0.119 4.119 16 C -0.073 4.073 17 C 0.230 3.770 18 O -0.498 6.498 19 N -0.212 5.212 20 C -0.459 4.459 21 H 0.097 0.903 22 C -0.214 4.214 23 N -0.563 5.563 24 Si 0.817 3.183 25 H -0.198 1.198 26 H -0.197 1.197 27 H -0.195 1.195 28 H 0.097 0.903 29 H 0.063 0.937 30 H 0.083 0.917 31 H 0.122 0.878 32 H 0.100 0.900 33 H 0.266 0.734 34 H 0.198 0.802 35 H 0.094 0.906 36 H 0.105 0.895 37 H 0.102 0.898 38 H 0.118 0.882 39 H 0.086 0.914 40 H 0.042 0.958 41 H 0.110 0.890 42 H 0.038 0.962 43 H 0.079 0.921 44 H 0.094 0.906 45 H 0.080 0.920 46 H 0.132 0.868 47 H 0.229 0.771 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.889 15.860 -24.598 29.854 hybrid contribution 0.183 -1.195 0.493 1.305 sum -5.706 14.666 -24.105 28.787 Atomic orbital electron populations 1.21687 0.92996 1.03233 1.01986 1.20233 0.97327 0.86354 1.04494 1.22871 0.98132 0.95102 0.83369 1.83777 1.65320 1.24101 1.34512 1.24742 1.01831 0.85796 0.96888 1.23216 1.05984 0.97263 0.94986 1.21170 1.14327 0.98094 0.92682 1.17718 0.81434 0.78778 0.84913 1.90773 1.32759 1.40590 1.81209 1.47712 1.29248 1.46962 1.09780 1.22251 0.89473 0.92704 1.02614 1.21333 1.00927 0.95755 0.81829 1.22422 1.01646 0.96346 0.87301 1.61489 1.06091 1.34390 1.23244 1.22411 0.88879 0.99513 1.01059 1.21747 0.98903 0.94076 0.92570 1.20680 0.82800 0.82182 0.91320 1.90465 1.47354 1.53725 1.58286 1.41934 1.39230 1.31771 1.08272 1.19692 1.24602 1.17257 0.84384 0.90268 1.26045 0.95369 0.95615 1.04402 1.69677 1.27120 1.23152 1.36305 0.84864 0.78306 0.78113 0.77008 1.19796 1.19719 1.19535 0.90310 0.93669 0.91651 0.87759 0.90038 0.73436 0.80240 0.90599 0.89510 0.89783 0.88160 0.91398 0.95753 0.89028 0.96170 0.92058 0.90650 0.92020 0.86809 0.77052 0.91335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.89 71.98 0.71 -1.75 16 2 C -0.05 -0.83 5.93 29.85 0.18 -0.65 16 3 C 0.06 1.11 6.62 25.26 0.17 1.28 16 4 O -0.18 -2.84 10.52 4.46 0.05 -2.80 16 5 C -0.03 -0.27 12.03 66.89 0.80 0.54 16 6 C -0.20 -2.45 8.84 23.65 0.21 -2.24 16 7 C -0.26 -5.23 5.44 -18.99 -0.10 -5.33 16 8 C 0.58 14.70 7.32 86.65 0.63 15.34 16 9 O -0.57 -18.66 15.31 -4.07 -0.06 -18.73 16 10 N -0.61 -12.65 2.87 -850.71 -2.44 -15.10 16 11 C 0.07 0.87 9.10 127.77 1.16 2.04 16 12 C 0.12 3.02 5.35 86.38 0.46 3.49 16 13 C 0.05 1.37 5.28 86.30 0.46 1.83 16 14 N -0.53 -17.97 4.50 -927.07 -4.17 -22.14 16 15 C 0.03 1.05 8.96 127.69 1.14 2.20 16 16 C 0.06 2.10 5.45 85.56 0.47 2.57 16 17 C 0.44 21.50 7.47 87.66 0.66 22.15 16 18 O -0.61 -34.22 13.91 -3.08 -0.04 -34.26 16 19 N -0.57 -29.92 5.29 -306.98 -1.62 -31.54 16 20 C -0.33 -18.91 9.68 84.04 0.81 -18.10 16 21 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 22 C -0.01 -0.80 5.50 84.92 0.47 -0.33 16 23 N -0.92 -50.13 13.05 21.66 0.28 -49.84 16 24 Si 0.99 43.36 29.55 68.60 2.03 45.39 16 25 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 26 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 27 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 28 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 29 H 0.04 1.03 7.56 -2.38 -0.02 1.01 16 30 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.08 1.69 7.65 -2.39 -0.02 1.67 16 33 H 0.25 0.01 8.06 -2.91 -0.02 -0.02 16 34 H 0.18 1.32 6.66 -2.91 -0.02 1.30 16 35 H 0.08 0.66 7.42 -2.39 -0.02 0.64 16 36 H 0.09 0.91 8.03 -2.38 -0.02 0.89 16 37 H 0.08 0.91 5.92 -2.39 -0.01 0.90 16 38 H 0.10 2.20 8.07 -2.38 -0.02 2.18 16 39 H 0.07 1.95 5.77 -2.39 -0.01 1.94 16 40 H 0.02 0.70 8.12 -2.39 -0.02 0.68 16 41 H 0.09 2.09 7.93 -2.39 -0.02 2.07 16 42 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 43 H 0.06 2.63 5.82 -2.39 -0.01 2.62 16 44 H 0.07 2.44 6.47 -2.39 -0.02 2.43 16 45 H 0.06 2.08 8.12 -2.39 -0.02 2.06 16 46 H 0.11 3.52 7.93 -2.38 -0.02 3.50 16 47 H 0.40 19.57 7.90 -92.71 -0.73 18.84 16 48 H 0.28 14.07 8.31 -92.71 -0.77 13.30 16 Total: -1.00 -76.19 394.68 2.49 -73.70 By element: Atomic # 1 Polarization: 32.05 SS G_CDS: 0.25 Total: 32.30 kcal Atomic # 6 Polarization: 14.80 SS G_CDS: 8.23 Total: 23.02 kcal Atomic # 7 Polarization: -110.67 SS G_CDS: -7.96 Total: -118.62 kcal Atomic # 8 Polarization: -55.73 SS G_CDS: -0.06 Total: -55.78 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -76.19 2.49 -73.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496700925.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.250 kcal (2) G-P(sol) polarization free energy of solvation -76.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds