Wall clock time and date at job start Tue Mar 31 2020 19:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.34332 * 126.44507 * 2 1 4 4 N 1.34477 * 107.67288 * 180.02562 * 3 2 1 5 5 C 1.30256 * 108.69620 * 0.02562 * 4 3 2 6 6 C 1.50699 * 125.61712 * 179.97438 * 5 4 3 7 7 O 1.42900 * 109.47616 * 90.02065 * 6 5 4 8 8 C 1.42902 * 114.00165 * 180.02562 * 7 6 5 9 9 C 1.50697 * 109.46992 * 179.97438 * 8 7 6 10 10 O 1.21282 * 120.00084 * 359.97438 * 9 8 7 11 11 N 1.34780 * 120.00183 * 179.97438 * 9 8 7 12 12 C 1.46497 * 120.00296 * 179.97438 * 11 9 8 13 13 H 1.08998 * 108.44971 * 327.31746 * 12 11 9 14 14 C 1.52566 * 108.51217 * 209.77021 * 12 11 9 15 15 C 1.50887 * 109.35682 * 153.73686 * 14 12 11 16 16 C 1.54296 * 110.23551 * 91.79835 * 15 14 12 17 17 N 1.47609 * 111.93994 * 319.69821 * 16 15 14 18 18 C 1.36938 * 118.64087 * 137.78219 * 17 16 15 19 19 H 1.07998 * 120.00120 * 207.41245 * 18 17 16 20 20 C 1.38815 * 120.00152 * 27.41023 * 18 17 16 21 21 N 1.31620 * 120.00064 * 16.09552 * 20 18 17 22 22 Si 1.86799 * 120.00030 * 195.82288 * 20 18 17 23 23 H 1.48496 * 109.47187 * 0.02562 * 22 20 18 24 24 H 1.48507 * 109.47115 * 119.99949 * 22 20 18 25 25 H 1.48494 * 109.47309 * 240.00119 * 22 20 18 26 26 C 1.44575 * 122.71569 * 317.49671 * 17 16 15 27 27 C 1.47093 * 108.50871 * 85.00349 * 12 11 9 28 28 O 1.33959 * 108.76533 * 0.22690 * 5 4 3 29 29 H 1.09004 * 109.47573 * 89.99767 * 1 2 3 30 30 H 1.08994 * 109.47421 * 209.99611 * 1 2 3 31 31 H 1.09002 * 109.47385 * 329.99941 * 1 2 3 32 32 H 1.08003 * 126.16130 * 0.05484 * 3 2 1 33 33 H 1.09004 * 109.46826 * 330.02029 * 6 5 4 34 34 H 1.09008 * 109.47257 * 210.02432 * 6 5 4 35 35 H 1.09000 * 109.47124 * 59.99913 * 8 7 6 36 36 H 1.08996 * 109.46623 * 299.99773 * 8 7 6 37 37 H 0.96997 * 119.99650 * 0.02562 * 11 9 8 38 38 H 1.08999 * 109.49032 * 273.69659 * 14 12 11 39 39 H 1.09001 * 109.49377 * 33.77085 * 14 12 11 40 40 H 1.08998 * 109.36397 * 212.07589 * 15 14 12 41 41 H 1.08998 * 109.36838 * 331.69539 * 15 14 12 42 42 H 1.09002 * 109.13865 * 199.01785 * 16 15 14 43 43 H 1.08993 * 108.96357 * 80.26469 * 16 15 14 44 44 H 0.96993 * 120.00136 * 179.97438 * 21 20 18 45 45 H 1.09004 * 109.45362 * 211.02501 * 26 17 16 46 46 H 1.08996 * 109.45179 * 330.97874 * 26 17 16 47 47 H 1.08997 * 109.33097 * 63.79791 * 27 12 11 48 48 H 1.09005 * 109.33045 * 304.31273 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3049 1.0806 0.0000 4 7 3.5782 0.6478 -0.0006 5 6 3.5764 -0.6547 -0.0015 6 6 4.8004 -1.5340 -0.0029 7 8 5.1879 -1.8133 1.3439 8 6 6.3453 -2.6441 1.4553 9 6 6.6619 -2.8718 2.9109 10 8 5.9653 -2.3714 3.7685 11 7 7.7191 -3.6314 3.2599 12 6 8.0273 -3.8523 4.6749 13 1 7.7431 -2.9603 5.2332 14 6 9.5333 -4.0500 4.8176 15 6 9.9620 -3.6420 6.2056 16 6 9.9351 -4.8603 7.1521 17 7 8.7605 -5.7208 6.9101 18 6 8.9308 -7.0796 6.9118 19 1 8.2689 -7.7075 6.3338 20 6 9.9542 -7.6499 7.6563 21 7 10.5542 -6.9494 8.5952 22 14 10.4746 -9.4142 7.3309 23 1 9.6462 -9.9808 6.2364 24 1 11.9053 -9.4431 6.9340 25 1 10.2863 -10.2211 8.5632 26 6 7.4366 -5.1886 6.6773 27 6 7.2193 -4.9826 5.1578 28 8 2.3075 -1.0840 -0.0065 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3634 -0.8899 0.5137 31 1 -0.3634 0.8900 0.5138 32 1 1.9821 2.1112 0.0008 33 1 5.6145 -1.0226 -0.5166 34 1 4.5760 -2.4683 -0.5176 35 1 7.1912 -2.1554 0.9720 36 1 6.1532 -3.6013 0.9708 37 1 8.2764 -4.0312 2.5740 38 1 9.7795 -5.0992 4.6547 39 1 10.0521 -3.4358 4.0815 40 1 10.9730 -3.2365 6.1670 41 1 9.2825 -2.8784 6.5840 42 1 9.9108 -4.5105 8.1842 43 1 10.8410 -5.4470 7.0001 44 1 11.2691 -7.3480 9.1156 45 1 6.6921 -5.8875 7.0589 46 1 7.3341 -4.2328 7.1910 47 1 7.5110 -5.8880 4.6257 48 1 6.1652 -4.7796 4.9684 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001502126768.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:10 Heat of formation + Delta-G solvation = -30.099386 kcal Electronic energy + Delta-G solvation = -28812.307403 eV Core-core repulsion = 24677.236983 eV Total energy + Delta-G solvation = -4135.070420 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.66686 -40.00988 -38.35713 -37.29228 -35.06937 -34.76770 -33.14265 -32.52272 -31.61288 -30.53303 -29.66958 -27.57818 -25.95813 -25.43952 -23.96803 -23.15364 -22.66877 -21.45749 -20.53649 -20.12103 -19.21741 -17.86689 -17.55481 -16.92684 -16.76749 -16.51448 -16.41722 -15.60924 -15.17817 -15.03630 -14.89028 -14.36308 -14.04741 -13.88699 -13.58237 -13.53480 -13.52863 -13.31043 -12.87929 -12.79040 -12.62272 -12.33744 -12.27547 -11.94692 -11.64445 -11.40290 -11.24689 -10.87710 -10.85883 -10.68899 -10.43396 -10.25898 -10.22099 -10.09662 -9.90308 -9.75728 -9.61607 -9.53376 -9.08556 -8.82748 -8.39484 -6.63292 -5.76860 -3.21160 0.95802 2.06292 2.31736 2.69625 2.91224 3.35971 3.44495 3.46140 3.54959 4.07099 4.32517 4.50725 4.53875 4.58825 4.66473 4.76087 4.83416 4.90256 4.93666 5.03045 5.14951 5.19615 5.35665 5.47053 5.47249 5.63093 5.67610 5.73563 5.91967 6.03278 6.07276 6.20884 6.33051 6.45978 6.49393 6.52538 6.66957 6.77051 6.83673 6.85322 6.93502 7.06667 7.36927 7.43686 7.64247 7.71840 7.84367 8.34407 8.49350 9.25934 9.92816 10.38895 11.30407 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.025570 B = 0.001849 C = 0.001820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.767619 B =15136.735779 C =15379.479001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.039 4.039 3 C -0.045 4.045 4 N -0.458 5.458 5 C 0.188 3.812 6 C 0.161 3.839 7 O -0.356 6.356 8 C 0.045 3.955 9 C 0.510 3.490 10 O -0.520 6.520 11 N -0.725 5.725 12 C 0.163 3.837 13 H 0.075 0.925 14 C -0.111 4.111 15 C -0.141 4.141 16 C 0.178 3.822 17 N -0.590 5.590 18 C -0.257 4.257 19 H 0.065 0.935 20 C 0.004 3.996 21 N -0.903 5.903 22 Si 0.899 3.101 23 H -0.278 1.278 24 H -0.290 1.290 25 H -0.291 1.291 26 C 0.162 3.838 27 C -0.154 4.154 28 O -0.194 6.194 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.186 0.814 33 H 0.098 0.902 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.396 0.604 38 H 0.081 0.919 39 H 0.050 0.950 40 H 0.056 0.944 41 H 0.048 0.952 42 H 0.026 0.974 43 H 0.072 0.928 44 H 0.252 0.748 45 H 0.049 0.951 46 H 0.034 0.966 47 H 0.062 0.938 48 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.342 12.360 -21.279 27.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.092 4.092 3 C -0.184 4.184 4 N -0.189 5.189 5 C -0.019 4.019 6 C 0.083 3.917 7 O -0.273 6.273 8 C -0.035 4.035 9 C 0.294 3.706 10 O -0.395 6.395 11 N -0.378 5.378 12 C 0.060 3.940 13 H 0.093 0.907 14 C -0.149 4.149 15 C -0.181 4.181 16 C 0.053 3.947 17 N -0.312 5.312 18 C -0.387 4.387 19 H 0.082 0.918 20 C -0.195 4.195 21 N -0.547 5.547 22 Si 0.729 3.271 23 H -0.203 1.203 24 H -0.217 1.217 25 H -0.218 1.218 26 C 0.033 3.967 27 C -0.196 4.196 28 O -0.080 6.080 29 H 0.103 0.897 30 H 0.099 0.901 31 H 0.113 0.887 32 H 0.203 0.797 33 H 0.116 0.884 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.229 0.771 38 H 0.099 0.901 39 H 0.069 0.931 40 H 0.075 0.925 41 H 0.066 0.934 42 H 0.044 0.956 43 H 0.091 0.909 44 H 0.062 0.938 45 H 0.067 0.933 46 H 0.052 0.948 47 H 0.081 0.919 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.275 13.067 -20.339 27.112 hybrid contribution 0.126 -1.541 -0.708 1.700 sum -12.149 11.526 -21.046 26.896 Atomic orbital electron populations 1.20315 0.83715 1.04754 1.03865 1.23590 0.95214 0.84519 1.05914 1.23131 0.87581 1.00534 1.07182 1.70414 1.23324 1.09047 1.16119 1.25507 0.83896 0.89931 1.02517 1.20477 0.89053 0.96412 0.85726 1.88092 1.45648 1.69813 1.23754 1.22317 0.89277 0.95847 0.96070 1.20049 0.81351 0.79257 0.89949 1.90750 1.48565 1.48673 1.51477 1.46377 1.29818 1.51691 1.09917 1.20055 0.95394 0.99495 0.79034 0.90694 1.21238 0.93007 1.02943 0.97676 1.22033 0.99865 1.00415 0.95754 1.21073 0.90988 0.88631 0.94003 1.43688 1.01573 1.02845 1.83058 1.19231 1.14356 0.82780 1.22299 0.91757 1.25055 1.00987 0.97545 0.95869 1.70079 1.26594 1.36618 1.21426 0.86282 0.78218 0.85016 0.77590 1.20333 1.21663 1.21789 1.20571 0.88324 0.96939 0.90861 1.21868 0.98233 0.97759 1.01715 1.84390 1.17700 1.36624 1.69327 0.89654 0.90062 0.88716 0.79687 0.88426 0.89890 0.89749 0.89774 0.77057 0.90054 0.93113 0.92529 0.93373 0.95602 0.90934 0.93761 0.93304 0.94780 0.91919 0.92926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.33 10.43 36.00 0.38 0.05 16 2 C -0.04 -0.36 7.39 -35.69 -0.26 -0.62 16 3 C -0.05 -0.45 11.80 -17.77 -0.21 -0.66 16 4 N -0.46 -5.79 11.29 -11.10 -0.13 -5.91 16 5 C 0.19 2.21 7.97 -12.95 -0.10 2.11 16 6 C 0.16 1.43 6.56 36.01 0.24 1.66 16 7 O -0.36 -4.49 9.86 -55.14 -0.54 -5.04 16 8 C 0.04 0.43 6.42 36.00 0.23 0.66 16 9 C 0.51 7.32 7.75 -10.99 -0.09 7.23 16 10 O -0.52 -10.18 16.00 -14.35 -0.23 -10.41 16 11 N -0.73 -9.48 4.88 -56.82 -0.28 -9.76 16 12 C 0.16 2.68 1.96 -70.99 -0.14 2.54 16 13 H 0.07 1.40 6.65 -51.93 -0.35 1.05 16 14 C -0.11 -1.80 5.00 -28.01 -0.14 -1.94 16 15 C -0.14 -2.58 5.71 -27.11 -0.15 -2.73 16 16 C 0.18 4.13 4.70 -2.76 -0.01 4.12 16 17 N -0.59 -14.27 2.26 -171.87 -0.39 -14.66 16 18 C -0.26 -6.83 9.43 -15.06 -0.14 -6.97 16 19 H 0.06 1.70 7.88 -52.49 -0.41 1.29 16 20 C 0.00 0.11 4.85 -17.43 -0.08 0.02 16 21 N -0.90 -25.80 11.11 55.49 0.62 -25.18 16 22 Si 0.90 21.35 29.58 -169.99 -5.03 16.32 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 26 C 0.16 3.45 5.65 -4.08 -0.02 3.43 16 27 C -0.15 -2.83 5.20 -28.58 -0.15 -2.98 16 28 O -0.19 -2.24 10.78 5.37 0.06 -2.18 16 29 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.19 1.22 8.06 -52.48 -0.42 0.80 16 33 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.08 0.49 8.14 -51.92 -0.42 0.07 16 35 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.40 3.83 8.61 -40.82 -0.35 3.48 16 38 H 0.08 1.49 7.49 -51.93 -0.39 1.10 16 39 H 0.05 0.70 8.05 -51.93 -0.42 0.28 16 40 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.05 0.87 7.31 -51.93 -0.38 0.49 16 42 H 0.03 0.66 8.02 -51.93 -0.42 0.24 16 43 H 0.07 1.86 6.41 -51.93 -0.33 1.53 16 44 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 45 H 0.05 1.07 7.99 -51.93 -0.41 0.65 16 46 H 0.03 0.72 8.06 -51.93 -0.42 0.30 16 47 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 48 H 0.05 0.98 7.95 -51.93 -0.41 0.56 16 LS Contribution 391.97 15.07 5.91 5.91 Total: -1.00 -35.97 391.97 -8.33 -44.30 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -7.66 Total: 0.70 kcal Atomic # 6 Polarization: 6.58 SS G_CDS: -0.66 Total: 5.92 kcal Atomic # 7 Polarization: -55.33 SS G_CDS: -0.17 Total: -55.51 kcal Atomic # 8 Polarization: -16.91 SS G_CDS: -0.72 Total: -17.63 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.03 Total: 16.32 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -35.97 -8.33 -44.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502126768.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.200 kcal (2) G-P(sol) polarization free energy of solvation -35.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds