Wall clock time and date at job start Tue Mar 31 2020 19:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.34332 * 126.44507 * 2 1 4 4 N 1.34477 * 107.67288 * 180.02562 * 3 2 1 5 5 C 1.30256 * 108.69620 * 0.02562 * 4 3 2 6 6 C 1.50699 * 125.61712 * 179.97438 * 5 4 3 7 7 O 1.42900 * 109.47616 * 90.02065 * 6 5 4 8 8 C 1.42902 * 114.00165 * 180.02562 * 7 6 5 9 9 C 1.50697 * 109.46992 * 179.97438 * 8 7 6 10 10 O 1.21282 * 120.00084 * 359.97438 * 9 8 7 11 11 N 1.34780 * 120.00183 * 179.97438 * 9 8 7 12 12 C 1.46497 * 120.00296 * 179.97438 * 11 9 8 13 13 H 1.08998 * 108.44971 * 327.31746 * 12 11 9 14 14 C 1.52566 * 108.51217 * 209.77021 * 12 11 9 15 15 C 1.50887 * 109.35682 * 153.73686 * 14 12 11 16 16 C 1.54296 * 110.23551 * 91.79835 * 15 14 12 17 17 N 1.47609 * 111.93994 * 319.69821 * 16 15 14 18 18 C 1.36938 * 118.64087 * 137.78219 * 17 16 15 19 19 H 1.07998 * 120.00120 * 207.41245 * 18 17 16 20 20 C 1.38815 * 120.00152 * 27.41023 * 18 17 16 21 21 N 1.31620 * 120.00064 * 16.09552 * 20 18 17 22 22 Si 1.86799 * 120.00030 * 195.82288 * 20 18 17 23 23 H 1.48496 * 109.47187 * 0.02562 * 22 20 18 24 24 H 1.48507 * 109.47115 * 119.99949 * 22 20 18 25 25 H 1.48494 * 109.47309 * 240.00119 * 22 20 18 26 26 C 1.44575 * 122.71569 * 317.49671 * 17 16 15 27 27 C 1.47093 * 108.50871 * 85.00349 * 12 11 9 28 28 O 1.33959 * 108.76533 * 0.22690 * 5 4 3 29 29 H 1.09004 * 109.47573 * 89.99767 * 1 2 3 30 30 H 1.08994 * 109.47421 * 209.99611 * 1 2 3 31 31 H 1.09002 * 109.47385 * 329.99941 * 1 2 3 32 32 H 1.08003 * 126.16130 * 0.05484 * 3 2 1 33 33 H 1.09004 * 109.46826 * 330.02029 * 6 5 4 34 34 H 1.09008 * 109.47257 * 210.02432 * 6 5 4 35 35 H 1.09000 * 109.47124 * 59.99913 * 8 7 6 36 36 H 1.08996 * 109.46623 * 299.99773 * 8 7 6 37 37 H 0.96997 * 119.99650 * 0.02562 * 11 9 8 38 38 H 1.08999 * 109.49032 * 273.69659 * 14 12 11 39 39 H 1.09001 * 109.49377 * 33.77085 * 14 12 11 40 40 H 1.08998 * 109.36397 * 212.07589 * 15 14 12 41 41 H 1.08998 * 109.36838 * 331.69539 * 15 14 12 42 42 H 1.09002 * 109.13865 * 199.01785 * 16 15 14 43 43 H 1.08993 * 108.96357 * 80.26469 * 16 15 14 44 44 H 0.96993 * 120.00136 * 179.97438 * 21 20 18 45 45 H 1.09004 * 109.45362 * 211.02501 * 26 17 16 46 46 H 1.08996 * 109.45179 * 330.97874 * 26 17 16 47 47 H 1.08997 * 109.33097 * 63.79791 * 27 12 11 48 48 H 1.09005 * 109.33045 * 304.31273 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3049 1.0806 0.0000 4 7 3.5782 0.6478 -0.0006 5 6 3.5764 -0.6547 -0.0015 6 6 4.8004 -1.5340 -0.0029 7 8 5.1879 -1.8133 1.3439 8 6 6.3453 -2.6441 1.4553 9 6 6.6619 -2.8718 2.9109 10 8 5.9653 -2.3714 3.7685 11 7 7.7191 -3.6314 3.2599 12 6 8.0273 -3.8523 4.6749 13 1 7.7431 -2.9603 5.2332 14 6 9.5333 -4.0500 4.8176 15 6 9.9620 -3.6420 6.2056 16 6 9.9351 -4.8603 7.1521 17 7 8.7605 -5.7208 6.9101 18 6 8.9308 -7.0796 6.9118 19 1 8.2689 -7.7075 6.3338 20 6 9.9542 -7.6499 7.6563 21 7 10.5542 -6.9494 8.5952 22 14 10.4746 -9.4142 7.3309 23 1 9.6462 -9.9808 6.2364 24 1 11.9053 -9.4431 6.9340 25 1 10.2863 -10.2211 8.5632 26 6 7.4366 -5.1886 6.6773 27 6 7.2193 -4.9826 5.1578 28 8 2.3075 -1.0840 -0.0065 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3634 -0.8899 0.5137 31 1 -0.3634 0.8900 0.5138 32 1 1.9821 2.1112 0.0008 33 1 5.6145 -1.0226 -0.5166 34 1 4.5760 -2.4683 -0.5176 35 1 7.1912 -2.1554 0.9720 36 1 6.1532 -3.6013 0.9708 37 1 8.2764 -4.0312 2.5740 38 1 9.7795 -5.0992 4.6547 39 1 10.0521 -3.4358 4.0815 40 1 10.9730 -3.2365 6.1670 41 1 9.2825 -2.8784 6.5840 42 1 9.9108 -4.5105 8.1842 43 1 10.8410 -5.4470 7.0001 44 1 11.2691 -7.3480 9.1156 45 1 6.6921 -5.8875 7.0589 46 1 7.3341 -4.2328 7.1910 47 1 7.5110 -5.8880 4.6257 48 1 6.1652 -4.7796 4.9684 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001502126768.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:10 Heat of formation + Delta-G solvation = -56.770706 kcal Electronic energy + Delta-G solvation = -28813.463958 eV Core-core repulsion = 24677.236983 eV Total energy + Delta-G solvation = -4136.226975 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.40353 -41.18794 -39.49826 -38.52052 -36.34704 -35.84952 -34.14344 -33.71898 -33.30482 -32.01596 -30.50257 -28.58318 -27.59277 -26.12946 -25.64420 -24.82750 -23.39406 -22.19075 -21.74207 -21.54540 -20.93799 -18.70717 -18.61802 -18.29810 -17.78681 -17.50880 -17.25252 -16.96895 -16.71165 -16.00988 -15.80780 -15.68791 -15.29900 -15.28550 -15.19586 -14.65957 -14.35469 -14.15250 -14.11293 -13.89049 -13.59825 -13.30929 -13.21664 -13.14697 -13.01178 -12.98374 -12.73664 -12.45898 -12.37455 -12.11542 -12.02333 -11.74555 -11.65859 -11.52026 -11.50391 -11.32596 -10.88946 -10.80425 -10.44823 -10.07396 -9.77136 -8.63513 -7.83260 -5.30784 0.23172 1.36136 1.47147 1.49587 1.59573 1.62925 1.63518 1.99973 2.53639 2.83497 3.29368 3.33597 3.66437 3.72170 3.77062 3.83801 4.00471 4.08913 4.12766 4.19762 4.24740 4.33179 4.35011 4.45015 4.45814 4.48939 4.62098 4.65952 4.68504 4.78189 4.97624 4.98533 5.00416 5.13011 5.13583 5.15870 5.25284 5.25440 5.34070 5.49862 5.56572 5.59932 5.70554 5.82121 5.85721 6.43472 6.62115 6.63949 7.20818 7.31454 7.95704 8.36582 9.22045 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.025570 B = 0.001849 C = 0.001820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.767619 B =15136.735779 C =15379.479001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.041 4.041 3 C -0.067 4.067 4 N -0.490 5.490 5 C 0.166 3.834 6 C 0.160 3.840 7 O -0.399 6.399 8 C 0.051 3.949 9 C 0.504 3.496 10 O -0.581 6.581 11 N -0.710 5.710 12 C 0.169 3.831 13 H 0.054 0.946 14 C -0.099 4.099 15 C -0.131 4.131 16 C 0.188 3.812 17 N -0.600 5.600 18 C -0.261 4.261 19 H 0.065 0.935 20 C -0.048 4.048 21 N -0.936 5.936 22 Si 0.964 3.036 23 H -0.266 1.266 24 H -0.289 1.289 25 H -0.297 1.297 26 C 0.158 3.842 27 C -0.134 4.134 28 O -0.210 6.210 29 H 0.105 0.895 30 H 0.081 0.919 31 H 0.115 0.885 32 H 0.210 0.790 33 H 0.121 0.879 34 H 0.114 0.886 35 H 0.124 0.876 36 H 0.122 0.878 37 H 0.417 0.583 38 H 0.065 0.935 39 H 0.088 0.912 40 H 0.078 0.922 41 H 0.049 0.951 42 H -0.010 1.010 43 H 0.045 0.955 44 H 0.248 0.752 45 H 0.036 0.964 46 H 0.031 0.969 47 H 0.060 0.940 48 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.585 12.392 -24.482 30.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.094 4.094 3 C -0.205 4.205 4 N -0.222 5.222 5 C -0.041 4.041 6 C 0.083 3.917 7 O -0.317 6.317 8 C -0.028 4.028 9 C 0.291 3.709 10 O -0.460 6.460 11 N -0.363 5.363 12 C 0.065 3.935 13 H 0.073 0.927 14 C -0.137 4.137 15 C -0.170 4.170 16 C 0.063 3.937 17 N -0.323 5.323 18 C -0.391 4.391 19 H 0.083 0.917 20 C -0.244 4.244 21 N -0.582 5.582 22 Si 0.792 3.208 23 H -0.190 1.190 24 H -0.215 1.215 25 H -0.225 1.225 26 C 0.030 3.970 27 C -0.175 4.175 28 O -0.097 6.097 29 H 0.124 0.876 30 H 0.100 0.900 31 H 0.133 0.867 32 H 0.227 0.773 33 H 0.139 0.861 34 H 0.132 0.868 35 H 0.142 0.858 36 H 0.140 0.860 37 H 0.255 0.745 38 H 0.083 0.917 39 H 0.106 0.894 40 H 0.097 0.903 41 H 0.068 0.932 42 H 0.008 0.992 43 H 0.063 0.937 44 H 0.058 0.942 45 H 0.055 0.945 46 H 0.050 0.950 47 H 0.079 0.921 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -12.518 13.092 -23.609 29.757 hybrid contribution 0.094 -1.494 0.327 1.532 sum -12.424 11.599 -23.282 28.826 Atomic orbital electron populations 1.20553 0.80687 1.05782 1.05456 1.24437 0.96868 0.83836 1.04234 1.23636 0.87061 1.02049 1.07782 1.70384 1.24856 1.09901 1.17010 1.26190 0.84755 0.90282 1.02830 1.20813 0.88685 0.97733 0.84434 1.88017 1.46872 1.70676 1.26163 1.22433 0.89989 0.97917 0.92452 1.20986 0.80273 0.77857 0.91792 1.90729 1.50573 1.51060 1.53666 1.46082 1.30004 1.51415 1.08849 1.19700 0.95247 0.97522 0.81063 0.92730 1.21119 0.92920 1.02544 0.97148 1.21893 1.01443 0.97860 0.95801 1.20865 0.89554 0.89786 0.93539 1.43860 1.02729 1.02466 1.83213 1.19501 1.14051 0.83982 1.21579 0.91731 1.25785 1.01401 1.01300 0.95899 1.70241 1.27171 1.38224 1.22578 0.85261 0.77756 0.80469 0.77264 1.19035 1.21536 1.22450 1.20655 0.86875 0.96279 0.93156 1.21591 0.98459 0.98518 0.98967 1.84393 1.18125 1.37667 1.69558 0.87627 0.89990 0.86653 0.77298 0.86147 0.86827 0.85838 0.86015 0.74536 0.91656 0.89379 0.90331 0.93220 0.99184 0.93661 0.94241 0.94507 0.95032 0.92112 0.93226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.51 10.43 71.23 0.74 0.23 16 2 C -0.04 -0.71 7.39 24.79 0.18 -0.53 16 3 C -0.07 -1.29 11.80 83.39 0.98 -0.30 16 4 N -0.49 -12.23 11.29 -303.84 -3.43 -15.66 16 5 C 0.17 3.78 7.97 88.34 0.70 4.49 16 6 C 0.16 2.48 6.56 71.24 0.47 2.95 16 7 O -0.40 -9.33 9.86 -129.94 -1.28 -10.61 16 8 C 0.05 0.80 6.42 71.24 0.46 1.26 16 9 C 0.50 13.45 7.75 87.66 0.68 14.13 16 10 O -0.58 -22.73 16.00 16.00 0.26 -22.47 16 11 N -0.71 -16.62 4.88 -452.06 -2.21 -18.83 16 12 C 0.17 5.33 1.96 43.01 0.08 5.42 16 13 H 0.05 2.00 6.65 -2.39 -0.02 1.99 16 14 C -0.10 -3.03 5.00 29.76 0.15 -2.88 16 15 C -0.13 -4.66 5.71 30.35 0.17 -4.49 16 16 C 0.19 8.92 4.70 86.61 0.41 9.33 16 17 N -0.60 -29.61 2.26 -697.68 -1.58 -31.19 16 18 C -0.26 -14.02 9.43 84.03 0.79 -13.23 16 19 H 0.06 3.41 7.88 -2.91 -0.02 3.39 16 20 C -0.05 -2.67 4.85 84.86 0.41 -2.26 16 21 N -0.94 -54.99 11.11 21.65 0.24 -54.75 16 22 Si 0.96 44.25 29.58 68.60 2.03 46.28 16 23 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 24 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 25 H -0.30 -13.86 7.11 99.48 0.71 -13.16 16 26 C 0.16 6.88 5.65 87.38 0.49 7.38 16 27 C -0.13 -4.86 5.20 29.40 0.15 -4.71 16 28 O -0.21 -4.75 10.78 -3.70 -0.04 -4.79 16 29 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.12 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.21 2.55 8.06 -2.91 -0.02 2.53 16 33 H 0.12 1.22 8.14 -2.38 -0.02 1.20 16 34 H 0.11 0.98 8.14 -2.38 -0.02 0.96 16 35 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.42 6.35 8.61 -92.71 -0.80 5.55 16 38 H 0.06 2.27 7.49 -2.39 -0.02 2.25 16 39 H 0.09 2.08 8.05 -2.39 -0.02 2.06 16 40 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 41 H 0.05 1.77 7.31 -2.39 -0.02 1.75 16 42 H -0.01 -0.53 8.02 -2.39 -0.02 -0.55 16 43 H 0.04 2.38 6.41 -2.39 -0.02 2.37 16 44 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 45 H 0.04 1.65 7.99 -2.39 -0.02 1.63 16 46 H 0.03 1.37 8.06 -2.39 -0.02 1.35 16 47 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 48 H 0.05 1.83 7.95 -2.38 -0.02 1.81 16 Total: -1.00 -83.07 391.97 1.04 -82.03 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: 0.17 Total: 13.23 kcal Atomic # 6 Polarization: 9.88 SS G_CDS: 6.88 Total: 16.76 kcal Atomic # 7 Polarization: -113.45 SS G_CDS: -6.97 Total: -120.43 kcal Atomic # 8 Polarization: -36.80 SS G_CDS: -1.06 Total: -37.87 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -83.07 1.04 -82.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502126768.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.261 kcal (2) G-P(sol) polarization free energy of solvation -83.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds