Wall clock time and date at job start Tue Mar 31 2020 21:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50701 * 109.47305 * 2 1 4 4 O 1.33658 * 125.80415 * 270.19604 * 3 2 1 5 5 C 1.34204 * 110.90767 * 180.28339 * 4 3 2 6 6 C 1.34183 * 109.12671 * 359.72418 * 5 4 3 7 7 C 1.36411 * 125.79855 * 90.00459 * 3 2 1 8 8 C 1.47379 * 127.19479 * 359.97438 * 7 3 2 9 9 O 1.21613 * 119.99937 * 359.71358 * 8 7 3 10 10 N 1.34775 * 120.00331 * 179.70729 * 8 7 3 11 11 C 1.46495 * 120.00077 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.47155 * 180.02562 * 11 10 8 13 13 H 1.09007 * 109.46923 * 65.00206 * 12 11 10 14 14 C 1.52993 * 109.47538 * 185.00270 * 12 11 10 15 15 C 1.53004 * 109.47589 * 184.25924 * 14 12 11 16 16 N 1.46897 * 109.47081 * 305.00579 * 12 11 10 17 17 C 1.46906 * 111.00071 * 305.54264 * 16 12 11 18 18 C 1.50696 * 109.47168 * 183.46222 * 17 16 12 19 19 O 1.21287 * 120.00389 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99896 * 179.72474 * 18 17 16 21 21 C 1.37094 * 120.00076 * 179.97438 * 20 18 17 22 22 H 1.07996 * 120.00082 * 0.02562 * 21 20 18 23 23 C 1.38949 * 119.99947 * 180.02562 * 21 20 18 24 24 N 1.31419 * 119.99931 * 180.02562 * 23 21 20 25 25 Si 1.86798 * 119.99939 * 359.97438 * 23 21 20 26 26 H 1.48500 * 109.46941 * 90.00720 * 25 23 21 27 27 H 1.48505 * 109.47067 * 210.00152 * 25 23 21 28 28 H 1.48496 * 109.47447 * 330.00283 * 25 23 21 29 29 H 1.09004 * 109.47021 * 299.99267 * 1 2 3 30 30 H 1.08994 * 109.47400 * 59.99534 * 1 2 3 31 31 H 1.09002 * 109.47374 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.46466 * 240.00222 * 2 1 3 33 33 H 1.08994 * 109.47400 * 120.00466 * 2 1 3 34 34 H 1.07999 * 125.44279 * 179.72333 * 5 4 3 35 35 H 1.08003 * 127.02505 * 179.97438 * 6 5 4 36 36 H 0.97005 * 119.99383 * 0.02562 * 10 8 7 37 37 H 1.09003 * 109.47236 * 60.00581 * 11 10 8 38 38 H 1.08997 * 109.47325 * 300.00596 * 11 10 8 39 39 H 1.09008 * 109.47225 * 304.26062 * 14 12 11 40 40 H 1.09003 * 109.47327 * 64.25520 * 14 12 11 41 41 H 1.09001 * 109.46804 * 174.73220 * 15 14 12 42 42 H 1.08995 * 109.46997 * 294.73660 * 15 14 12 43 43 H 1.08998 * 109.46846 * 54.73714 * 15 14 12 44 44 H 1.00895 * 111.00401 * 69.50011 * 16 12 11 45 45 H 1.08995 * 109.46837 * 63.46295 * 17 16 12 46 46 H 1.08999 * 109.46857 * 303.46158 * 17 16 12 47 47 H 0.96996 * 119.99860 * 0.02562 * 20 18 17 48 48 H 0.97003 * 119.99568 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2895 2.1592 -1.0840 5 6 2.7288 3.3795 -0.7390 6 6 2.7644 3.4719 0.5992 7 6 2.2985 2.1731 1.1064 8 6 2.1544 1.7668 2.5157 9 8 1.7539 0.6515 2.7892 10 7 2.4665 2.6312 3.5016 11 6 2.3238 2.2271 4.9024 12 6 2.7404 3.3846 5.8121 13 1 2.0492 4.2172 5.6803 14 6 2.7109 2.9233 7.2705 15 6 3.0240 4.1081 8.1867 16 7 4.1001 3.8170 5.4627 17 6 5.0382 2.6872 5.5017 18 6 6.4335 3.1830 5.2220 19 8 6.6276 4.3615 5.0114 20 7 7.4667 2.3176 5.2119 21 6 8.7361 2.7685 4.9569 22 1 8.9081 3.8172 4.7645 23 6 9.8012 1.8762 4.9459 24 7 11.0180 2.3085 4.7020 25 14 9.5036 0.0625 5.2793 26 1 9.2273 -0.6373 3.9990 27 1 10.7083 -0.5279 5.9160 28 1 8.3389 -0.0893 6.1879 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8932 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.0091 4.1623 -1.4283 35 1 3.0729 4.3258 1.1841 36 1 2.7856 3.5209 3.2834 37 1 2.9598 1.3637 5.0982 38 1 1.2845 1.9652 5.1010 39 1 1.7215 2.5320 7.5079 40 1 3.4560 2.1419 7.4196 41 1 2.9114 3.8025 9.2270 42 1 4.0477 4.4401 8.0143 43 1 2.3357 4.9254 7.9716 44 1 4.1153 4.2687 4.5607 45 1 4.7551 1.9537 4.7468 46 1 5.0081 2.2239 6.4879 47 1 7.3121 1.3757 5.3842 48 1 11.7616 1.6856 4.6947 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567959765.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:10 Heat of formation + Delta-G solvation = -61.595501 kcal Electronic energy + Delta-G solvation = -29661.931024 eV Core-core repulsion = 25525.494830 eV Total energy + Delta-G solvation = -4136.436194 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.79586 -39.87511 -38.64155 -37.37733 -34.47893 -34.05491 -33.92819 -32.82732 -32.08289 -31.61952 -29.26753 -28.55722 -26.75887 -24.71949 -24.03910 -23.45674 -22.68036 -21.02092 -20.48842 -19.78454 -19.26090 -18.40964 -18.13251 -16.82284 -16.52583 -16.11361 -16.05018 -15.57386 -15.23236 -14.95790 -14.74376 -14.57892 -14.27275 -14.13181 -13.83449 -13.71634 -13.29533 -13.22261 -13.13784 -12.90043 -12.74341 -12.53621 -12.49668 -12.07722 -12.01081 -11.83166 -11.63679 -11.37664 -11.26092 -11.14559 -10.93232 -10.66474 -10.58300 -10.09140 -10.03332 -9.97652 -9.56757 -9.26481 -8.79076 -8.63166 -8.21434 -8.16187 -6.31248 -3.82460 1.16850 1.84797 2.55850 3.03354 3.04156 3.07946 3.15819 3.22538 3.74209 4.06324 4.11335 4.23653 4.51756 4.59527 4.63744 4.72679 4.84476 4.98760 4.99290 5.05812 5.14296 5.20941 5.26574 5.29323 5.39376 5.43200 5.54336 5.61107 5.66517 5.68916 5.73426 5.79213 5.82176 5.87154 5.93250 5.96130 6.01496 6.06907 6.20814 6.25489 6.48574 6.79711 7.00368 7.31575 7.44667 7.58004 8.07478 8.14303 8.59714 8.94957 9.42686 9.82845 10.81851 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.008442 B = 0.003494 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3316.028034 B = 8012.457345 C = 9743.409186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.053 4.053 3 C 0.082 3.918 4 O -0.175 6.175 5 C -0.037 4.037 6 C -0.187 4.187 7 C -0.246 4.246 8 C 0.593 3.407 9 O -0.541 6.541 10 N -0.722 5.722 11 C 0.082 3.918 12 C 0.076 3.924 13 H 0.090 0.910 14 C -0.113 4.113 15 C -0.142 4.142 16 N -0.652 5.652 17 C 0.040 3.960 18 C 0.451 3.549 19 O -0.565 6.565 20 N -0.591 5.591 21 C -0.304 4.304 22 H 0.120 0.880 23 C 0.042 3.958 24 N -0.881 5.881 25 Si 0.878 3.122 26 H -0.271 1.271 27 H -0.276 1.276 28 H -0.269 1.269 29 H 0.061 0.939 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.114 0.886 34 H 0.209 0.791 35 H 0.158 0.842 36 H 0.399 0.601 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.046 0.954 42 H 0.071 0.929 43 H 0.049 0.951 44 H 0.345 0.655 45 H 0.048 0.952 46 H 0.090 0.910 47 H 0.370 0.630 48 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.888 -2.435 -5.832 23.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.090 4.090 3 C 0.028 3.972 4 O -0.071 6.071 5 C -0.103 4.103 6 C -0.206 4.206 7 C -0.250 4.250 8 C 0.381 3.619 9 O -0.420 6.420 10 N -0.374 5.374 11 C -0.044 4.044 12 C -0.035 4.035 13 H 0.108 0.892 14 C -0.151 4.151 15 C -0.200 4.200 16 N -0.283 5.283 17 C -0.092 4.092 18 C 0.237 3.763 19 O -0.447 6.447 20 N -0.230 5.230 21 C -0.433 4.433 22 H 0.137 0.863 23 C -0.161 4.161 24 N -0.521 5.521 25 Si 0.704 3.296 26 H -0.197 1.197 27 H -0.201 1.201 28 H -0.195 1.195 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.100 0.900 33 H 0.132 0.868 34 H 0.226 0.774 35 H 0.176 0.824 36 H 0.234 0.766 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.065 0.935 42 H 0.090 0.910 43 H 0.069 0.931 44 H 0.165 0.835 45 H 0.066 0.934 46 H 0.109 0.891 47 H 0.202 0.798 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -22.673 -2.335 -5.439 23.433 hybrid contribution 0.116 -1.259 -0.540 1.374 sum -22.557 -3.593 -5.979 23.611 Atomic orbital electron populations 1.21679 0.93349 1.02617 1.02290 1.20400 0.96937 0.86447 1.05202 1.22848 0.96896 0.94292 0.83137 1.83770 1.65068 1.23303 1.34955 1.23885 1.03730 0.86167 0.96469 1.22906 1.05160 0.97849 0.94697 1.21114 1.14066 0.96071 0.93746 1.17160 0.76733 0.84231 0.83741 1.90749 1.46924 1.20281 1.84096 1.45743 1.68195 1.17388 1.06093 1.22206 1.02316 0.99605 0.80268 1.22002 0.90921 0.95679 0.94884 0.89169 1.21507 1.01534 0.99152 0.92933 1.21626 1.03323 0.97313 0.97695 1.60190 1.04030 1.27173 1.36938 1.21818 0.92440 0.93033 1.01951 1.19684 0.85459 0.86979 0.84180 1.90557 1.84692 1.16367 1.53059 1.42210 1.07752 1.08580 1.64458 1.19417 0.80759 0.97891 1.45228 0.86288 1.25029 0.95017 0.98430 0.97616 1.69625 0.98851 1.35365 1.48307 0.86696 0.78520 0.85328 0.79022 1.19659 1.20118 1.19469 0.91940 0.92665 0.91350 0.89952 0.86821 0.77434 0.82426 0.76564 0.90850 0.91000 0.91735 0.91514 0.93483 0.90995 0.93139 0.83489 0.93410 0.89147 0.79759 0.91627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 9.89 37.16 0.37 -0.85 16 2 C -0.05 -0.53 5.94 -27.88 -0.17 -0.69 16 3 C 0.08 0.95 6.63 -34.97 -0.23 0.72 16 4 O -0.18 -1.92 10.52 7.67 0.08 -1.84 16 5 C -0.04 -0.34 12.03 29.30 0.35 0.01 16 6 C -0.19 -1.92 10.60 -37.45 -0.40 -2.32 16 7 C -0.25 -3.04 6.31 -103.28 -0.65 -3.69 16 8 C 0.59 7.95 7.81 -12.54 -0.10 7.85 16 9 O -0.54 -8.41 14.85 5.27 0.08 -8.33 16 10 N -0.72 -8.19 5.31 -61.40 -0.33 -8.51 16 11 C 0.08 0.88 4.47 -4.04 -0.02 0.87 16 12 C 0.08 0.79 2.71 -67.72 -0.18 0.61 16 13 H 0.09 0.83 8.14 -51.92 -0.42 0.41 16 14 C -0.11 -1.13 5.31 -26.73 -0.14 -1.27 16 15 C -0.14 -1.52 9.73 37.16 0.36 -1.16 16 16 N -0.65 -8.99 5.41 -107.99 -0.58 -9.58 16 17 C 0.04 0.65 5.30 -4.97 -0.03 0.62 16 18 C 0.45 10.08 7.83 -10.99 -0.09 10.00 16 19 O -0.56 -14.78 15.85 5.55 0.09 -14.69 16 20 N -0.59 -14.12 5.09 -10.97 -0.06 -14.18 16 21 C -0.30 -8.62 10.16 -14.94 -0.15 -8.78 16 22 H 0.12 3.84 7.39 -52.49 -0.39 3.46 16 23 C 0.04 1.16 5.50 -17.46 -0.10 1.06 16 24 N -0.88 -25.85 13.96 55.50 0.77 -25.08 16 25 Si 0.88 19.67 27.73 -169.99 -4.71 14.96 16 26 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 27 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 28 H -0.27 -5.53 6.52 56.52 0.37 -5.16 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.11 1.30 6.49 -51.93 -0.34 0.96 16 34 H 0.21 1.10 8.06 -52.49 -0.42 0.68 16 35 H 0.16 1.32 7.74 -52.48 -0.41 0.91 16 36 H 0.40 4.00 6.40 -40.82 -0.26 3.74 16 37 H 0.07 0.90 6.72 -51.93 -0.35 0.55 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 40 H 0.07 0.71 6.28 -51.93 -0.33 0.39 16 41 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.07 0.96 7.88 -51.93 -0.41 0.55 16 43 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.35 4.80 7.29 -39.29 -0.29 4.51 16 45 H 0.05 0.73 6.49 -51.93 -0.34 0.40 16 46 H 0.09 1.34 6.22 -51.93 -0.32 1.02 16 47 H 0.37 7.90 5.76 -40.82 -0.24 7.67 16 48 H 0.27 7.40 8.31 -40.82 -0.34 7.07 16 LS Contribution 393.98 15.07 5.94 5.94 Total: -1.00 -34.56 393.98 -6.94 -41.50 By element: Atomic # 1 Polarization: 23.88 SS G_CDS: -7.05 Total: 16.82 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: -1.17 Total: 2.99 kcal Atomic # 7 Polarization: -57.15 SS G_CDS: -0.19 Total: -57.34 kcal Atomic # 8 Polarization: -25.11 SS G_CDS: 0.25 Total: -24.86 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -4.71 Total: 14.96 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.56 -6.94 -41.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567959765.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.094 kcal (2) G-P(sol) polarization free energy of solvation -34.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds