Wall clock time and date at job start Tue Mar 31 2020 21:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50701 * 109.47305 * 2 1 4 4 O 1.33658 * 125.80415 * 270.19604 * 3 2 1 5 5 C 1.34204 * 110.90767 * 180.28339 * 4 3 2 6 6 C 1.34183 * 109.12671 * 359.72418 * 5 4 3 7 7 C 1.36411 * 125.79855 * 90.00459 * 3 2 1 8 8 C 1.47379 * 127.19479 * 359.97438 * 7 3 2 9 9 O 1.21613 * 119.99937 * 359.71358 * 8 7 3 10 10 N 1.34775 * 120.00331 * 179.70729 * 8 7 3 11 11 C 1.46495 * 120.00077 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.47155 * 180.02562 * 11 10 8 13 13 H 1.09007 * 109.46923 * 65.00206 * 12 11 10 14 14 C 1.52993 * 109.47538 * 185.00270 * 12 11 10 15 15 C 1.53004 * 109.47589 * 184.25924 * 14 12 11 16 16 N 1.46897 * 109.47081 * 305.00579 * 12 11 10 17 17 C 1.46906 * 111.00071 * 305.54264 * 16 12 11 18 18 C 1.50696 * 109.47168 * 183.46222 * 17 16 12 19 19 O 1.21287 * 120.00389 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99896 * 179.72474 * 18 17 16 21 21 C 1.37094 * 120.00076 * 179.97438 * 20 18 17 22 22 H 1.07996 * 120.00082 * 0.02562 * 21 20 18 23 23 C 1.38949 * 119.99947 * 180.02562 * 21 20 18 24 24 N 1.31419 * 119.99931 * 180.02562 * 23 21 20 25 25 Si 1.86798 * 119.99939 * 359.97438 * 23 21 20 26 26 H 1.48500 * 109.46941 * 90.00720 * 25 23 21 27 27 H 1.48505 * 109.47067 * 210.00152 * 25 23 21 28 28 H 1.48496 * 109.47447 * 330.00283 * 25 23 21 29 29 H 1.09004 * 109.47021 * 299.99267 * 1 2 3 30 30 H 1.08994 * 109.47400 * 59.99534 * 1 2 3 31 31 H 1.09002 * 109.47374 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.46466 * 240.00222 * 2 1 3 33 33 H 1.08994 * 109.47400 * 120.00466 * 2 1 3 34 34 H 1.07999 * 125.44279 * 179.72333 * 5 4 3 35 35 H 1.08003 * 127.02505 * 179.97438 * 6 5 4 36 36 H 0.97005 * 119.99383 * 0.02562 * 10 8 7 37 37 H 1.09003 * 109.47236 * 60.00581 * 11 10 8 38 38 H 1.08997 * 109.47325 * 300.00596 * 11 10 8 39 39 H 1.09008 * 109.47225 * 304.26062 * 14 12 11 40 40 H 1.09003 * 109.47327 * 64.25520 * 14 12 11 41 41 H 1.09001 * 109.46804 * 174.73220 * 15 14 12 42 42 H 1.08995 * 109.46997 * 294.73660 * 15 14 12 43 43 H 1.08998 * 109.46846 * 54.73714 * 15 14 12 44 44 H 1.00895 * 111.00401 * 69.50011 * 16 12 11 45 45 H 1.08995 * 109.46837 * 63.46295 * 17 16 12 46 46 H 1.08999 * 109.46857 * 303.46158 * 17 16 12 47 47 H 0.96996 * 119.99860 * 0.02562 * 20 18 17 48 48 H 0.97003 * 119.99568 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2895 2.1592 -1.0840 5 6 2.7288 3.3795 -0.7390 6 6 2.7644 3.4719 0.5992 7 6 2.2985 2.1731 1.1064 8 6 2.1544 1.7668 2.5157 9 8 1.7539 0.6515 2.7892 10 7 2.4665 2.6312 3.5016 11 6 2.3238 2.2271 4.9024 12 6 2.7404 3.3846 5.8121 13 1 2.0492 4.2172 5.6803 14 6 2.7109 2.9233 7.2705 15 6 3.0240 4.1081 8.1867 16 7 4.1001 3.8170 5.4627 17 6 5.0382 2.6872 5.5017 18 6 6.4335 3.1830 5.2220 19 8 6.6276 4.3615 5.0114 20 7 7.4667 2.3176 5.2119 21 6 8.7361 2.7685 4.9569 22 1 8.9081 3.8172 4.7645 23 6 9.8012 1.8762 4.9459 24 7 11.0180 2.3085 4.7020 25 14 9.5036 0.0625 5.2793 26 1 9.2273 -0.6373 3.9990 27 1 10.7083 -0.5279 5.9160 28 1 8.3389 -0.0893 6.1879 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8932 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.0091 4.1623 -1.4283 35 1 3.0729 4.3258 1.1841 36 1 2.7856 3.5209 3.2834 37 1 2.9598 1.3637 5.0982 38 1 1.2845 1.9652 5.1010 39 1 1.7215 2.5320 7.5079 40 1 3.4560 2.1419 7.4196 41 1 2.9114 3.8025 9.2270 42 1 4.0477 4.4401 8.0143 43 1 2.3357 4.9254 7.9716 44 1 4.1153 4.2687 4.5607 45 1 4.7551 1.9537 4.7468 46 1 5.0081 2.2239 6.4879 47 1 7.3121 1.3757 5.3842 48 1 11.7616 1.6856 4.6947 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567959765.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:10 Heat of formation + Delta-G solvation = -88.151168 kcal Electronic energy + Delta-G solvation = -29663.082564 eV Core-core repulsion = 25525.494830 eV Total energy + Delta-G solvation = -4137.587734 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.59707 -40.94437 -40.20132 -38.62996 -36.02130 -35.29357 -34.89301 -33.77282 -33.63059 -33.10699 -30.13367 -29.52676 -28.17686 -26.01050 -25.38558 -24.23955 -23.51253 -21.86347 -21.69904 -21.11186 -20.64775 -20.09469 -18.95581 -18.27954 -17.37057 -17.20718 -17.02496 -16.93158 -16.57225 -16.30749 -15.78742 -15.62433 -15.41821 -15.32249 -15.02791 -14.73632 -14.61740 -14.39218 -14.30605 -14.08679 -13.90426 -13.69811 -13.61591 -13.29212 -13.16407 -12.93195 -12.66973 -12.53321 -12.43583 -12.25518 -12.00818 -12.00254 -11.78114 -11.55597 -11.50404 -11.09244 -10.88467 -10.44859 -10.25711 -10.19290 -9.58738 -9.38760 -8.42942 -6.02889 0.28324 1.08242 1.27644 1.31994 1.40592 1.77788 1.94070 2.15829 2.20039 2.27417 2.71711 3.13602 3.38974 3.51245 3.65933 3.75642 3.83994 4.01346 4.10539 4.12108 4.25656 4.27578 4.34823 4.40446 4.41600 4.53895 4.55206 4.66739 4.67762 4.74883 4.93062 4.94260 4.99035 5.00849 5.06389 5.20533 5.24437 5.31538 5.36576 5.39491 5.50437 5.59798 5.88329 5.99365 6.00110 6.33741 6.41379 6.57881 6.86831 7.11243 7.38443 7.94234 8.74564 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.008442 B = 0.003494 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3316.028034 B = 8012.457345 C = 9743.409186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.053 4.053 3 C 0.070 3.930 4 O -0.180 6.180 5 C -0.031 4.031 6 C -0.203 4.203 7 C -0.270 4.270 8 C 0.587 3.413 9 O -0.569 6.569 10 N -0.715 5.715 11 C 0.086 3.914 12 C 0.086 3.914 13 H 0.109 0.891 14 C -0.112 4.112 15 C -0.139 4.139 16 N -0.662 5.662 17 C 0.059 3.941 18 C 0.452 3.548 19 O -0.607 6.607 20 N -0.594 5.594 21 C -0.325 4.325 22 H 0.059 0.941 23 C -0.012 4.012 24 N -0.932 5.932 25 Si 0.958 3.042 26 H -0.261 1.261 27 H -0.272 1.272 28 H -0.234 1.234 29 H 0.044 0.956 30 H 0.063 0.937 31 H 0.083 0.917 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.246 0.754 35 H 0.173 0.827 36 H 0.405 0.595 37 H 0.063 0.937 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.061 0.939 41 H 0.056 0.944 42 H 0.039 0.961 43 H 0.058 0.942 44 H 0.344 0.656 45 H 0.063 0.937 46 H 0.112 0.888 47 H 0.386 0.614 48 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.252 -4.175 -5.633 26.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.090 4.090 3 C 0.017 3.983 4 O -0.076 6.076 5 C -0.096 4.096 6 C -0.222 4.222 7 C -0.275 4.275 8 C 0.376 3.624 9 O -0.450 6.450 10 N -0.367 5.367 11 C -0.040 4.040 12 C -0.024 4.024 13 H 0.127 0.873 14 C -0.151 4.151 15 C -0.197 4.197 16 N -0.294 5.294 17 C -0.073 4.073 18 C 0.240 3.760 19 O -0.491 6.491 20 N -0.235 5.235 21 C -0.455 4.455 22 H 0.077 0.923 23 C -0.211 4.211 24 N -0.573 5.573 25 Si 0.778 3.222 26 H -0.185 1.185 27 H -0.197 1.197 28 H -0.158 1.158 29 H 0.063 0.937 30 H 0.082 0.918 31 H 0.102 0.898 32 H 0.118 0.882 33 H 0.114 0.886 34 H 0.262 0.738 35 H 0.190 0.810 36 H 0.242 0.758 37 H 0.081 0.919 38 H 0.100 0.900 39 H 0.108 0.892 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.059 0.941 43 H 0.077 0.923 44 H 0.163 0.837 45 H 0.080 0.920 46 H 0.130 0.870 47 H 0.221 0.779 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -25.068 -4.051 -5.223 25.924 hybrid contribution 0.830 -0.532 -0.632 1.171 sum -24.238 -4.582 -5.856 25.353 Atomic orbital electron populations 1.21634 0.92359 1.03506 1.01774 1.20431 0.97745 0.85726 1.05136 1.23168 0.96870 0.94990 0.83272 1.83783 1.65095 1.23959 1.34791 1.24649 1.01995 0.86002 0.96910 1.23162 1.05842 0.97689 0.95459 1.21285 1.15237 0.97393 0.93537 1.17386 0.76441 0.84066 0.84467 1.90726 1.48350 1.21372 1.84575 1.45718 1.67490 1.17401 1.06098 1.22200 1.02685 0.99197 0.79870 1.22056 0.89017 0.96193 0.95102 0.87295 1.21541 1.02836 0.98604 0.92069 1.21582 1.01511 0.97960 0.98626 1.60183 1.05565 1.26590 1.37054 1.21635 0.88553 0.93729 1.03383 1.20892 0.87432 0.86223 0.81496 1.90536 1.85880 1.18527 1.54184 1.42071 1.06547 1.09648 1.65270 1.19005 0.83479 0.95768 1.47208 0.92294 1.26024 0.94032 1.04536 0.96488 1.69795 1.00240 1.37884 1.49405 0.85458 0.79776 0.77020 0.79903 1.18518 1.19728 1.15792 0.93707 0.91795 0.89779 0.88235 0.88552 0.73801 0.80999 0.75820 0.91900 0.90023 0.89215 0.92050 0.92456 0.94140 0.92289 0.83651 0.91951 0.87041 0.77858 0.91157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.89 71.98 0.71 -1.49 16 2 C -0.05 -1.03 5.94 29.85 0.18 -0.85 16 3 C 0.07 1.60 6.63 25.26 0.17 1.77 16 4 O -0.18 -3.72 10.52 4.53 0.05 -3.67 16 5 C -0.03 -0.51 12.03 66.89 0.80 0.30 16 6 C -0.20 -3.93 10.60 23.65 0.25 -3.68 16 7 C -0.27 -6.53 6.31 -18.99 -0.12 -6.65 16 8 C 0.59 15.36 7.81 86.65 0.68 16.03 16 9 O -0.57 -17.46 14.85 -4.07 -0.06 -17.52 16 10 N -0.72 -15.19 5.31 -466.43 -2.47 -17.67 16 11 C 0.09 1.66 4.47 86.38 0.39 2.05 16 12 C 0.09 1.57 2.71 44.91 0.12 1.69 16 13 H 0.11 1.65 8.14 -2.38 -0.02 1.64 16 14 C -0.11 -1.90 5.31 30.59 0.16 -1.73 16 15 C -0.14 -2.68 9.73 71.98 0.70 -1.98 16 16 N -0.66 -17.27 5.41 -495.58 -2.68 -19.95 16 17 C 0.06 1.81 5.30 85.55 0.45 2.26 16 18 C 0.45 20.23 7.83 87.66 0.69 20.92 16 19 O -0.61 -32.76 15.85 -3.05 -0.05 -32.81 16 20 N -0.59 -28.36 5.09 -307.00 -1.56 -29.93 16 21 C -0.33 -19.14 10.16 84.04 0.85 -18.28 16 22 H 0.06 4.09 7.39 -2.91 -0.02 4.07 16 23 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 24 N -0.93 -56.45 13.96 21.66 0.30 -56.14 16 25 Si 0.96 39.75 27.73 68.60 1.90 41.65 16 26 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 27 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 28 H -0.23 -8.34 6.52 99.48 0.65 -7.69 16 29 H 0.04 0.88 8.14 -2.38 -0.02 0.86 16 30 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.10 1.51 8.14 -2.38 -0.02 1.49 16 33 H 0.10 2.21 6.49 -2.39 -0.02 2.19 16 34 H 0.25 1.88 8.06 -2.91 -0.02 1.85 16 35 H 0.17 2.65 7.74 -2.91 -0.02 2.63 16 36 H 0.41 7.56 6.40 -92.70 -0.59 6.97 16 37 H 0.06 1.39 6.72 -2.39 -0.02 1.37 16 38 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.09 1.12 8.14 -2.38 -0.02 1.11 16 40 H 0.06 1.12 6.28 -2.39 -0.01 1.11 16 41 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.04 1.03 7.88 -2.39 -0.02 1.01 16 43 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.34 9.18 7.29 -89.70 -0.65 8.53 16 45 H 0.06 1.77 6.49 -2.39 -0.02 1.76 16 46 H 0.11 3.00 6.22 -2.39 -0.01 2.99 16 47 H 0.39 15.72 5.76 -92.71 -0.53 15.19 16 48 H 0.28 15.45 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -79.99 393.98 1.10 -78.89 By element: Atomic # 1 Polarization: 47.82 SS G_CDS: -0.83 Total: 46.99 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: 6.50 Total: 10.15 kcal Atomic # 7 Polarization: -117.27 SS G_CDS: -6.42 Total: -123.69 kcal Atomic # 8 Polarization: -53.94 SS G_CDS: -0.06 Total: -54.00 kcal Atomic # 14 Polarization: 39.75 SS G_CDS: 1.90 Total: 41.65 kcal Total: -79.99 1.10 -78.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567959765.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.258 kcal (2) G-P(sol) polarization free energy of solvation -79.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds