Wall clock time and date at job start Tue Mar 31 2020 21:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50698 * 109.47145 * 2 1 4 4 O 1.33655 * 125.79922 * 270.30777 * 3 2 1 5 5 C 1.34215 * 110.90744 * 180.12522 * 4 3 2 6 6 C 1.34173 * 109.12295 * 359.60818 * 5 4 3 7 7 C 1.36407 * 125.80340 * 89.99897 * 3 2 1 8 8 C 1.47381 * 127.19296 * 0.07602 * 7 3 2 9 9 O 1.21618 * 119.99717 * 359.97081 * 8 7 3 10 10 N 1.34775 * 120.00076 * 179.97438 * 8 7 3 11 11 C 1.46496 * 119.99931 * 179.97438 * 10 8 7 12 12 C 1.53003 * 109.47401 * 179.97438 * 11 10 8 13 13 H 1.09003 * 109.46927 * 295.00279 * 12 11 10 14 14 C 1.52998 * 109.47432 * 175.00263 * 12 11 10 15 15 C 1.52996 * 109.46995 * 175.37498 * 14 12 11 16 16 N 1.46906 * 109.46921 * 54.99734 * 12 11 10 17 17 C 1.46897 * 110.99581 * 62.89065 * 16 12 11 18 18 C 1.50703 * 109.46893 * 185.63217 * 17 16 12 19 19 O 1.21295 * 119.99710 * 0.02562 * 18 17 16 20 20 N 1.34777 * 120.00070 * 179.97438 * 18 17 16 21 21 C 1.37093 * 119.99792 * 180.02562 * 20 18 17 22 22 H 1.08001 * 120.00210 * 0.02562 * 21 20 18 23 23 C 1.38958 * 119.99877 * 179.97438 * 21 20 18 24 24 N 1.31408 * 120.00081 * 179.97438 * 23 21 20 25 25 Si 1.86791 * 119.99785 * 0.02562 * 23 21 20 26 26 H 1.48498 * 109.47536 * 89.99595 * 25 23 21 27 27 H 1.48502 * 109.46994 * 209.99586 * 25 23 21 28 28 H 1.48501 * 109.47311 * 329.99535 * 25 23 21 29 29 H 1.09005 * 109.47201 * 60.00070 * 1 2 3 30 30 H 1.09005 * 109.47412 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47138 * 300.00298 * 1 2 3 32 32 H 1.09007 * 109.46837 * 239.99551 * 2 1 3 33 33 H 1.08994 * 109.47329 * 120.00338 * 2 1 3 34 34 H 1.08003 * 125.43684 * 179.87514 * 5 4 3 35 35 H 1.08003 * 127.02119 * 180.25015 * 6 5 4 36 36 H 0.96999 * 120.00359 * 359.97438 * 10 8 7 37 37 H 1.09004 * 109.47094 * 299.99727 * 11 10 8 38 38 H 1.09003 * 109.47288 * 59.99623 * 11 10 8 39 39 H 1.08999 * 109.46819 * 295.37269 * 14 12 11 40 40 H 1.09000 * 109.47073 * 55.37461 * 14 12 11 41 41 H 1.08998 * 109.47214 * 298.72685 * 15 14 12 42 42 H 1.09000 * 109.47231 * 58.72992 * 15 14 12 43 43 H 1.09004 * 109.46929 * 178.72563 * 15 14 12 44 44 H 1.00902 * 110.99458 * 186.84341 * 16 12 11 45 45 H 1.08996 * 109.47458 * 305.63370 * 17 16 12 46 46 H 1.09006 * 109.47359 * 65.63778 * 17 16 12 47 47 H 0.96998 * 119.99515 * 0.02562 * 20 18 17 48 48 H 0.96996 * 120.00040 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2874 2.1598 -1.0840 5 6 2.7241 3.3812 -0.7391 6 6 2.7575 3.4744 0.5990 7 6 2.2983 2.1732 1.1063 8 6 2.1561 1.7663 2.5157 9 8 1.7620 0.6487 2.7891 10 7 2.4627 2.6327 3.5014 11 6 2.3208 2.2285 4.9023 12 6 2.7316 3.3881 5.8120 13 1 3.7931 3.5965 5.6781 14 6 2.4660 3.0109 7.2708 15 6 2.9825 4.1220 8.1870 16 7 1.9506 4.5830 5.4651 17 6 0.5174 4.3612 5.6991 18 6 -0.2625 5.5521 5.2045 19 8 0.3185 6.4928 4.7057 20 7 -1.6056 5.5715 5.3155 21 6 -2.3150 6.6546 4.8650 22 1 -1.7977 7.4922 4.4209 23 6 -3.6998 6.6743 4.9789 24 7 -4.3798 7.7128 4.5477 25 14 -4.5944 5.2253 5.7465 26 1 -4.7192 5.4397 7.2106 27 1 -5.9476 5.1051 5.1467 28 1 -3.8278 3.9792 5.4923 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 3.0001 4.1653 -1.4286 35 1 3.0597 4.3306 1.1838 36 1 2.7774 3.5240 3.2834 37 1 1.2827 1.9614 5.1001 38 1 2.9610 1.3685 5.0990 39 1 1.3944 2.8827 7.4235 40 1 2.9805 2.0788 7.5045 41 1 4.0580 4.2349 8.0506 42 1 2.4843 5.0591 7.9381 43 1 2.7730 3.8637 9.2250 44 1 2.2794 5.3901 5.9736 45 1 0.1957 3.4682 5.1633 46 1 0.3397 4.2284 6.7663 47 1 -2.0701 4.8190 5.7140 48 1 -5.3464 7.7264 4.6269 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567959766.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:13 Heat of formation + Delta-G solvation = -89.883709 kcal Electronic energy + Delta-G solvation = -29707.352211 eV Core-core repulsion = 25569.689349 eV Total energy + Delta-G solvation = -4137.662863 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.54446 -40.78862 -40.17646 -38.65285 -36.00958 -35.33928 -34.85537 -33.76267 -33.61916 -32.82860 -30.15052 -29.51348 -28.24216 -25.99689 -25.33101 -24.21421 -23.47723 -21.76076 -21.70841 -21.12024 -20.56861 -20.04058 -18.77558 -18.27713 -17.27510 -17.25587 -16.96780 -16.76937 -16.60348 -16.15022 -15.79911 -15.64887 -15.36014 -15.31519 -15.14582 -14.84428 -14.53780 -14.44125 -14.26736 -14.03296 -13.89568 -13.62278 -13.49573 -13.27256 -13.20190 -12.94646 -12.73349 -12.52506 -12.44213 -12.27030 -12.01401 -11.97629 -11.83481 -11.66385 -11.51763 -11.00812 -10.82722 -10.43767 -10.24952 -10.01881 -9.53243 -9.34549 -8.42587 -6.02389 0.34342 1.13010 1.27953 1.31732 1.40567 1.84018 1.95557 2.20245 2.28200 2.38712 2.74048 3.14159 3.42474 3.56360 3.71775 3.83597 3.89649 4.01398 4.15010 4.15965 4.17171 4.29405 4.34762 4.40978 4.44752 4.48853 4.57151 4.61708 4.72101 4.79418 4.81179 4.93103 4.94095 5.03355 5.09497 5.13235 5.25688 5.27463 5.37241 5.39067 5.49686 5.52841 5.89485 6.01887 6.04567 6.39019 6.58677 6.61757 6.87601 7.25103 7.39397 7.95560 8.75010 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.008018 B = 0.003663 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3491.411963 B = 7641.605432 C = 9463.343820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.048 4.048 3 C 0.067 3.933 4 O -0.180 6.180 5 C -0.032 4.032 6 C -0.201 4.201 7 C -0.267 4.267 8 C 0.582 3.418 9 O -0.577 6.577 10 N -0.701 5.701 11 C 0.126 3.874 12 C 0.084 3.916 13 H 0.110 0.890 14 C -0.155 4.155 15 C -0.152 4.152 16 N -0.669 5.669 17 C 0.059 3.941 18 C 0.452 3.548 19 O -0.607 6.607 20 N -0.595 5.595 21 C -0.326 4.326 22 H 0.058 0.942 23 C -0.012 4.012 24 N -0.933 5.933 25 Si 0.958 3.042 26 H -0.254 1.254 27 H -0.275 1.275 28 H -0.239 1.239 29 H 0.059 0.941 30 H 0.087 0.913 31 H 0.035 0.965 32 H 0.105 0.895 33 H 0.101 0.899 34 H 0.246 0.754 35 H 0.168 0.832 36 H 0.413 0.587 37 H 0.055 0.945 38 H 0.082 0.918 39 H 0.065 0.935 40 H 0.088 0.912 41 H 0.067 0.933 42 H 0.041 0.959 43 H 0.063 0.937 44 H 0.353 0.647 45 H 0.096 0.904 46 H 0.078 0.922 47 H 0.386 0.614 48 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.532 -17.463 -1.521 24.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.085 4.085 3 C 0.013 3.987 4 O -0.076 6.076 5 C -0.097 4.097 6 C -0.221 4.221 7 C -0.272 4.272 8 C 0.371 3.629 9 O -0.459 6.459 10 N -0.352 5.352 11 C 0.003 3.997 12 C -0.026 4.026 13 H 0.128 0.872 14 C -0.195 4.195 15 C -0.210 4.210 16 N -0.302 5.302 17 C -0.073 4.073 18 C 0.239 3.761 19 O -0.490 6.490 20 N -0.237 5.237 21 C -0.455 4.455 22 H 0.076 0.924 23 C -0.211 4.211 24 N -0.574 5.574 25 Si 0.779 3.221 26 H -0.178 1.178 27 H -0.200 1.200 28 H -0.163 1.163 29 H 0.078 0.922 30 H 0.106 0.894 31 H 0.055 0.945 32 H 0.123 0.877 33 H 0.120 0.880 34 H 0.262 0.738 35 H 0.185 0.815 36 H 0.249 0.751 37 H 0.074 0.926 38 H 0.100 0.900 39 H 0.083 0.917 40 H 0.107 0.893 41 H 0.086 0.914 42 H 0.060 0.940 43 H 0.082 0.918 44 H 0.174 0.826 45 H 0.114 0.886 46 H 0.096 0.904 47 H 0.221 0.779 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 16.405 -17.714 -2.624 24.285 hybrid contribution -0.927 0.710 1.284 1.736 sum 15.478 -17.003 -1.339 23.032 Atomic orbital electron populations 1.21668 0.93301 1.03448 1.01367 1.20399 0.96913 0.85685 1.05468 1.23180 0.97088 0.95187 0.83216 1.83770 1.65234 1.23844 1.34783 1.24615 1.02325 0.86001 0.96791 1.23144 1.05955 0.97487 0.95466 1.21335 1.14960 0.97094 0.93791 1.17427 0.76690 0.84243 0.84591 1.90701 1.48966 1.21613 1.84651 1.45619 1.66706 1.17136 1.05696 1.21510 1.01464 0.97127 0.79642 1.21957 0.98968 0.88787 0.92907 0.87240 1.22167 1.02353 1.00633 0.94310 1.21754 1.01726 0.97796 0.99688 1.60119 1.00619 1.06218 1.63223 1.21609 0.89797 0.95318 1.00594 1.20934 0.82163 0.89986 0.82968 1.90533 1.69748 1.39810 1.48952 1.42076 1.06481 1.18364 1.56735 1.19005 0.90369 0.97502 1.38604 0.92359 1.26020 0.96523 1.00853 0.97675 1.69789 1.08440 1.31778 1.47365 0.85454 0.78631 0.78558 0.79478 1.17827 1.19979 1.16253 0.92229 0.89449 0.94526 0.87694 0.88034 0.73812 0.81465 0.75063 0.92628 0.89969 0.91666 0.89333 0.91410 0.93988 0.91784 0.82643 0.88572 0.90394 0.77868 0.91181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 9.89 71.98 0.71 -2.23 16 2 C -0.05 -1.00 5.94 29.85 0.18 -0.83 16 3 C 0.07 1.68 6.63 25.26 0.17 1.85 16 4 O -0.18 -4.14 10.52 4.45 0.05 -4.09 16 5 C -0.03 -0.63 12.03 66.89 0.80 0.18 16 6 C -0.20 -4.66 10.60 23.65 0.25 -4.41 16 7 C -0.27 -7.33 6.31 -18.99 -0.12 -7.45 16 8 C 0.58 17.08 7.81 86.65 0.68 17.75 16 9 O -0.58 -19.11 14.84 -4.09 -0.06 -19.17 16 10 N -0.70 -17.51 5.38 -466.41 -2.51 -20.02 16 11 C 0.13 2.68 4.76 86.38 0.41 3.09 16 12 C 0.08 1.49 2.70 44.91 0.12 1.61 16 13 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 14 C -0.16 -2.29 5.10 30.59 0.16 -2.14 16 15 C -0.15 -2.23 9.70 71.98 0.70 -1.54 16 16 N -0.67 -17.08 5.32 -495.56 -2.63 -19.72 16 17 C 0.06 1.78 5.31 85.56 0.45 2.24 16 18 C 0.45 20.16 7.83 87.66 0.69 20.85 16 19 O -0.61 -32.57 15.90 -3.08 -0.05 -32.62 16 20 N -0.59 -28.40 5.09 -306.97 -1.56 -29.96 16 21 C -0.33 -19.16 10.16 84.04 0.85 -18.31 16 22 H 0.06 4.06 7.39 -2.91 -0.02 4.03 16 23 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 24 N -0.93 -56.52 13.96 21.67 0.30 -56.21 16 25 Si 0.96 39.72 27.74 68.60 1.90 41.63 16 26 H -0.25 -9.86 7.11 99.48 0.71 -9.15 16 27 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 28 H -0.24 -8.64 6.52 99.48 0.65 -7.99 16 29 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 30 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 31 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.10 1.62 8.14 -2.38 -0.02 1.60 16 33 H 0.10 2.37 6.48 -2.39 -0.02 2.36 16 34 H 0.25 2.51 8.06 -2.91 -0.02 2.49 16 35 H 0.17 3.42 7.74 -2.91 -0.02 3.40 16 36 H 0.41 10.00 7.31 -92.71 -0.68 9.33 16 37 H 0.06 1.33 6.61 -2.38 -0.02 1.32 16 38 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.06 1.06 6.23 -2.39 -0.01 1.05 16 40 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.04 0.75 6.87 -2.39 -0.02 0.74 16 43 H 0.06 0.86 8.14 -2.39 -0.02 0.85 16 44 H 0.35 9.33 7.29 -89.69 -0.65 8.68 16 45 H 0.10 2.81 6.22 -2.39 -0.01 2.80 16 46 H 0.08 1.95 6.48 -2.38 -0.02 1.94 16 47 H 0.39 15.68 5.76 -92.71 -0.53 15.15 16 48 H 0.28 15.45 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -79.60 393.79 1.04 -78.56 By element: Atomic # 1 Polarization: 52.06 SS G_CDS: -0.91 Total: 51.16 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: 6.52 Total: 10.46 kcal Atomic # 7 Polarization: -119.51 SS G_CDS: -6.41 Total: -125.92 kcal Atomic # 8 Polarization: -55.83 SS G_CDS: -0.06 Total: -55.89 kcal Atomic # 14 Polarization: 39.72 SS G_CDS: 1.90 Total: 41.63 kcal Total: -79.60 1.04 -78.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567959766.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.324 kcal (2) G-P(sol) polarization free energy of solvation -79.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds