Wall clock time and date at job start Tue Mar 31 2020 19:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34326 * 126.43995 * 2 1 4 4 N 1.34488 * 107.66593 * 179.76699 * 3 2 1 5 5 C 1.30258 * 108.69882 * 0.42215 * 4 3 2 6 6 C 1.50695 * 125.62052 * 179.83949 * 5 4 3 7 7 O 1.42901 * 109.47287 * 89.68938 * 6 5 4 8 8 C 1.42898 * 113.99950 * 180.02562 * 7 6 5 9 9 C 1.50699 * 109.47277 * 180.02562 * 8 7 6 10 10 O 1.21289 * 119.99957 * 359.97438 * 9 8 7 11 11 N 1.34771 * 120.00469 * 180.02562 * 9 8 7 12 12 C 1.48154 * 127.83692 * 359.97025 * 11 9 8 13 13 C 1.54389 * 104.61471 * 140.39518 * 12 11 9 14 14 H 1.09002 * 110.33877 * 142.73850 * 13 12 11 15 15 C 1.52999 * 110.43117 * 264.94833 * 13 12 11 16 16 C 1.54281 * 104.96192 * 23.87031 * 13 12 11 17 17 H 1.09002 * 110.34302 * 118.86887 * 16 13 12 18 18 C 1.53006 * 110.33853 * 241.02139 * 16 13 12 19 19 N 1.46501 * 109.46453 * 183.52632 * 18 16 13 20 20 C 1.36947 * 119.99507 * 180.02562 * 19 18 16 21 21 H 1.08000 * 119.99968 * 359.97438 * 20 19 18 22 22 C 1.38811 * 120.00019 * 180.02562 * 20 19 18 23 23 N 1.31618 * 119.99811 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00103 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.46903 * 59.99722 * 24 22 20 26 26 H 1.48496 * 109.47255 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.47126 * 299.99985 * 24 22 20 28 28 C 1.48144 * 127.84197 * 179.97438 * 11 9 8 29 29 O 1.33968 * 108.75959 * 359.57361 * 5 4 3 30 30 H 1.08996 * 109.47034 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47208 * 299.99962 * 1 2 3 32 32 H 1.08995 * 109.46771 * 60.00014 * 1 2 3 33 33 H 1.07992 * 126.17156 * 0.02562 * 3 2 1 34 34 H 1.09005 * 109.46822 * 329.69254 * 6 5 4 35 35 H 1.08999 * 109.47056 * 209.69528 * 6 5 4 36 36 H 1.08996 * 109.47355 * 60.00318 * 8 7 6 37 37 H 1.09009 * 109.47020 * 300.00221 * 8 7 6 38 38 H 1.09000 * 110.40147 * 21.60948 * 12 11 9 39 39 H 1.09000 * 110.40322 * 259.18172 * 12 11 9 40 40 H 1.09004 * 109.46885 * 175.59138 * 15 13 12 41 41 H 1.09004 * 109.47333 * 295.59332 * 15 13 12 42 42 H 1.09001 * 109.46905 * 55.59635 * 15 13 12 43 43 H 1.09003 * 109.46961 * 303.52247 * 18 16 13 44 44 H 1.09002 * 109.47250 * 63.53000 * 18 16 13 45 45 H 0.96996 * 120.00999 * 359.97438 * 19 18 16 46 46 H 0.97003 * 119.99739 * 180.02562 * 23 22 20 47 47 H 1.08999 * 110.40697 * 100.81942 * 28 11 9 48 48 H 1.08998 * 110.40769 * 338.39232 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3049 1.0806 0.0000 4 7 3.5782 0.6478 0.0052 5 6 3.5766 -0.6548 -0.0007 6 6 4.8004 -1.5340 -0.0013 7 8 5.1877 -1.8122 1.3458 8 6 6.3450 -2.6429 1.4581 9 6 6.6607 -2.8704 2.9140 10 8 5.9636 -2.3701 3.7711 11 7 7.7183 -3.6291 3.2637 12 6 8.6783 -4.3175 2.3695 13 6 10.0502 -4.1296 3.0522 14 1 10.6586 -5.0262 2.9331 15 6 10.7750 -2.9148 2.4694 16 6 9.7250 -3.8963 4.5422 17 1 10.1737 -4.6783 5.1549 18 6 10.2256 -2.5205 4.9867 19 7 9.9828 -2.3529 6.4217 20 6 10.3500 -1.1912 7.0471 21 1 10.8187 -0.3988 6.4825 22 6 10.1205 -1.0325 8.4069 23 7 9.5497 -1.9984 9.0950 24 14 10.6219 0.5518 9.2600 25 1 9.9067 1.6958 8.6395 26 1 10.2700 0.4711 10.7004 27 1 12.0870 0.7482 9.1181 28 6 8.1847 -3.9640 4.6293 29 8 2.3075 -1.0840 -0.0004 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.9822 2.1112 0.0004 34 1 5.6146 -1.0230 -0.5153 35 1 4.5761 -2.4686 -0.5153 36 1 7.1911 -2.1546 0.9746 37 1 6.1531 -3.6007 0.9742 38 1 8.6780 -3.8541 1.3829 39 1 8.4337 -5.3769 2.2929 40 1 11.7044 -2.7502 3.0146 41 1 10.9976 -3.0946 1.4176 42 1 10.1392 -2.0341 2.5608 43 1 11.2942 -2.4408 4.7872 44 1 9.6941 -1.7449 4.4353 45 1 9.5615 -3.0644 6.9288 46 1 9.3890 -1.8873 10.0452 47 1 7.8632 -4.9683 4.9051 48 1 7.8121 -3.2340 5.3479 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569842950.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:45 Heat of formation + Delta-G solvation = -30.041208 kcal Electronic energy + Delta-G solvation = -28940.449619 eV Core-core repulsion = 24805.381721 eV Total energy + Delta-G solvation = -4135.067897 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.60804 -40.17395 -38.59427 -37.33482 -35.00873 -34.54547 -33.08815 -32.78247 -31.15547 -30.25597 -29.17950 -27.68131 -26.46498 -25.46955 -24.85053 -23.06064 -22.61142 -21.89481 -21.39091 -19.46071 -18.96281 -17.88475 -17.40291 -17.09433 -16.76415 -16.71992 -16.30229 -15.90410 -15.44343 -14.88352 -14.68834 -14.56334 -14.00417 -13.72688 -13.68304 -13.60890 -13.50314 -13.43689 -12.85922 -12.80164 -12.73224 -12.50066 -12.29359 -12.11175 -11.95048 -11.71058 -11.58172 -11.48456 -10.94408 -10.80199 -10.79281 -10.60768 -10.39364 -10.20893 -10.17249 -9.89077 -9.67574 -9.59788 -9.02819 -8.78721 -8.57952 -6.84406 -5.69294 -2.97568 1.00915 2.09669 2.38160 2.70485 2.79498 3.50080 3.52649 3.54444 3.55532 3.99502 4.36843 4.43250 4.54071 4.60556 4.65665 4.67835 4.73886 4.81812 4.84697 4.91512 4.97997 4.99176 5.06982 5.19420 5.34466 5.38210 5.46041 5.52979 5.57047 5.64842 5.73133 5.75687 5.83915 5.98445 6.01531 6.05970 6.12434 6.21057 6.34386 6.44525 6.55400 6.60159 6.79710 6.94294 7.43390 7.64376 7.76335 8.28901 8.49692 9.60608 10.18040 10.52126 11.53660 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.010705 B = 0.002439 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2614.961001 B =11477.144005 C =13194.497643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.040 4.040 3 C -0.044 4.044 4 N -0.456 5.456 5 C 0.187 3.813 6 C 0.162 3.838 7 O -0.355 6.355 8 C 0.052 3.948 9 C 0.532 3.468 10 O -0.510 6.510 11 N -0.619 5.619 12 C 0.102 3.898 13 C -0.099 4.099 14 H 0.084 0.916 15 C -0.147 4.147 16 C -0.106 4.106 17 H 0.087 0.913 18 C 0.162 3.838 19 N -0.733 5.733 20 C -0.238 4.238 21 H 0.068 0.932 22 C -0.014 4.014 23 N -0.934 5.934 24 Si 0.907 3.093 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.286 1.286 28 C 0.111 3.889 29 O -0.195 6.195 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.186 0.814 34 H 0.098 0.902 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.066 0.934 41 H 0.049 0.951 42 H 0.061 0.939 43 H 0.024 0.976 44 H 0.021 0.979 45 H 0.383 0.617 46 H 0.255 0.745 47 H 0.067 0.933 48 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.034 -5.192 -26.075 28.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.093 4.093 3 C -0.184 4.184 4 N -0.187 5.187 5 C -0.020 4.020 6 C 0.084 3.916 7 O -0.273 6.273 8 C -0.027 4.027 9 C 0.318 3.682 10 O -0.383 6.383 11 N -0.356 5.356 12 C -0.021 4.021 13 C -0.118 4.118 14 H 0.103 0.897 15 C -0.205 4.205 16 C -0.126 4.126 17 H 0.106 0.894 18 C 0.035 3.965 19 N -0.377 5.377 20 C -0.369 4.369 21 H 0.086 0.914 22 C -0.210 4.210 23 N -0.582 5.582 24 Si 0.738 3.262 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.213 1.213 28 C -0.010 4.010 29 O -0.081 6.081 30 H 0.098 0.902 31 H 0.110 0.890 32 H 0.108 0.892 33 H 0.203 0.797 34 H 0.116 0.884 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.101 0.899 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.085 0.915 41 H 0.068 0.932 42 H 0.080 0.920 43 H 0.042 0.958 44 H 0.038 0.962 45 H 0.216 0.784 46 H 0.065 0.935 47 H 0.085 0.915 48 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -11.024 -4.304 -25.421 28.040 hybrid contribution -0.305 0.190 0.522 0.634 sum -11.329 -4.114 -24.899 27.662 Atomic orbital electron populations 1.20316 0.83727 1.04519 1.04058 1.23577 0.95188 0.84523 1.06023 1.23125 0.87574 1.00594 1.07071 1.70430 1.23317 1.09045 1.15870 1.25496 0.83846 0.89958 1.02658 1.20467 0.89120 0.96356 0.85629 1.88099 1.45528 1.69825 1.23837 1.22214 0.89304 0.95645 0.95561 1.19589 0.80017 0.78496 0.90058 1.90809 1.48255 1.47657 1.51603 1.48845 1.27597 1.49824 1.09321 1.22546 0.88653 0.97046 0.93902 1.22083 0.95157 0.99495 0.95109 0.89724 1.21925 1.01181 0.97809 0.99545 1.22371 0.94732 1.00479 0.94990 0.89445 1.20803 0.96874 0.92164 0.86704 1.42389 1.73525 1.18712 1.03059 1.19145 1.32502 0.93822 0.91423 0.91377 1.24728 1.01647 0.98006 0.96592 1.69644 1.48564 1.32408 1.07606 0.86271 0.78057 0.83273 0.78626 1.21266 1.21699 1.21332 1.22495 0.93553 1.01185 0.83802 1.84386 1.17717 1.36635 1.69378 0.90249 0.89008 0.89190 0.79665 0.88371 0.89948 0.89660 0.89944 0.90589 0.90916 0.91459 0.93226 0.92045 0.95841 0.96156 0.78371 0.93509 0.91479 0.88244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.37 10.43 36.01 0.38 0.01 16 2 C -0.04 -0.39 7.39 -35.69 -0.26 -0.66 16 3 C -0.04 -0.48 11.80 -17.77 -0.21 -0.69 16 4 N -0.46 -6.27 11.29 -11.10 -0.13 -6.40 16 5 C 0.19 2.36 7.97 -12.95 -0.10 2.25 16 6 C 0.16 1.57 6.56 36.00 0.24 1.80 16 7 O -0.36 -4.92 9.86 -55.14 -0.54 -5.47 16 8 C 0.05 0.57 5.40 36.01 0.19 0.77 16 9 C 0.53 8.60 7.99 -10.99 -0.09 8.51 16 10 O -0.51 -11.27 16.77 -14.36 -0.24 -11.51 16 11 N -0.62 -8.78 3.32 -169.28 -0.56 -9.34 16 12 C 0.10 0.97 6.47 -2.40 -0.02 0.95 16 13 C -0.10 -1.08 3.65 -89.22 -0.33 -1.40 16 14 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 15 C -0.15 -1.63 7.93 37.16 0.29 -1.34 16 16 C -0.11 -1.62 3.11 -89.20 -0.28 -1.90 16 17 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 18 C 0.16 3.25 4.41 -4.04 -0.02 3.24 16 19 N -0.73 -18.96 5.16 -59.90 -0.31 -19.27 16 20 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 21 H 0.07 1.93 7.83 -52.49 -0.41 1.51 16 22 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 23 N -0.93 -29.12 13.06 55.49 0.72 -28.39 16 24 Si 0.91 23.34 29.55 -169.99 -5.02 18.32 16 25 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 26 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 27 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 28 C 0.11 1.83 6.44 -2.39 -0.02 1.81 16 29 O -0.19 -2.37 10.78 5.37 0.06 -2.31 16 30 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.19 1.42 8.06 -52.49 -0.42 1.00 16 34 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.09 0.71 7.95 -51.93 -0.41 0.30 16 37 H 0.08 0.60 8.14 -51.92 -0.42 0.17 16 38 H 0.08 0.53 7.02 -51.93 -0.36 0.17 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.81 6.71 -51.93 -0.35 0.46 16 41 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.06 0.80 6.90 -51.93 -0.36 0.44 16 43 H 0.02 0.47 6.58 -51.93 -0.34 0.13 16 44 H 0.02 0.45 7.01 -51.93 -0.36 0.08 16 45 H 0.38 10.34 7.50 -40.82 -0.31 10.04 16 46 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 47 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 48 H 0.10 2.12 7.20 -51.93 -0.37 1.74 16 LS Contribution 396.78 15.07 5.98 5.98 Total: -1.00 -39.90 396.78 -7.99 -47.90 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -7.49 Total: 4.71 kcal Atomic # 6 Polarization: 6.26 SS G_CDS: -0.46 Total: 5.79 kcal Atomic # 7 Polarization: -63.13 SS G_CDS: -0.27 Total: -63.40 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: -0.73 Total: -19.29 kcal Atomic # 14 Polarization: 23.34 SS G_CDS: -5.02 Total: 18.32 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -39.90 -7.99 -47.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569842950.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.857 kcal (2) G-P(sol) polarization free energy of solvation -39.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds