Wall clock time and date at job start Tue Mar 31 2020 19:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34326 * 126.43995 * 2 1 4 4 N 1.34488 * 107.66593 * 179.76699 * 3 2 1 5 5 C 1.30258 * 108.69882 * 0.42215 * 4 3 2 6 6 C 1.50695 * 125.62052 * 179.83949 * 5 4 3 7 7 O 1.42901 * 109.47287 * 89.68938 * 6 5 4 8 8 C 1.42898 * 113.99950 * 180.02562 * 7 6 5 9 9 C 1.50699 * 109.47277 * 180.02562 * 8 7 6 10 10 O 1.21289 * 119.99957 * 359.97438 * 9 8 7 11 11 N 1.34771 * 120.00469 * 180.02562 * 9 8 7 12 12 C 1.48154 * 127.83692 * 359.97025 * 11 9 8 13 13 C 1.54389 * 104.61471 * 140.39518 * 12 11 9 14 14 H 1.09002 * 110.33877 * 142.73850 * 13 12 11 15 15 C 1.52999 * 110.43117 * 264.94833 * 13 12 11 16 16 C 1.54281 * 104.96192 * 23.87031 * 13 12 11 17 17 H 1.09002 * 110.34302 * 118.86887 * 16 13 12 18 18 C 1.53006 * 110.33853 * 241.02139 * 16 13 12 19 19 N 1.46501 * 109.46453 * 183.52632 * 18 16 13 20 20 C 1.36947 * 119.99507 * 180.02562 * 19 18 16 21 21 H 1.08000 * 119.99968 * 359.97438 * 20 19 18 22 22 C 1.38811 * 120.00019 * 180.02562 * 20 19 18 23 23 N 1.31618 * 119.99811 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00103 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.46903 * 59.99722 * 24 22 20 26 26 H 1.48496 * 109.47255 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.47126 * 299.99985 * 24 22 20 28 28 C 1.48144 * 127.84197 * 179.97438 * 11 9 8 29 29 O 1.33968 * 108.75959 * 359.57361 * 5 4 3 30 30 H 1.08996 * 109.47034 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47208 * 299.99962 * 1 2 3 32 32 H 1.08995 * 109.46771 * 60.00014 * 1 2 3 33 33 H 1.07992 * 126.17156 * 0.02562 * 3 2 1 34 34 H 1.09005 * 109.46822 * 329.69254 * 6 5 4 35 35 H 1.08999 * 109.47056 * 209.69528 * 6 5 4 36 36 H 1.08996 * 109.47355 * 60.00318 * 8 7 6 37 37 H 1.09009 * 109.47020 * 300.00221 * 8 7 6 38 38 H 1.09000 * 110.40147 * 21.60948 * 12 11 9 39 39 H 1.09000 * 110.40322 * 259.18172 * 12 11 9 40 40 H 1.09004 * 109.46885 * 175.59138 * 15 13 12 41 41 H 1.09004 * 109.47333 * 295.59332 * 15 13 12 42 42 H 1.09001 * 109.46905 * 55.59635 * 15 13 12 43 43 H 1.09003 * 109.46961 * 303.52247 * 18 16 13 44 44 H 1.09002 * 109.47250 * 63.53000 * 18 16 13 45 45 H 0.96996 * 120.00999 * 359.97438 * 19 18 16 46 46 H 0.97003 * 119.99739 * 180.02562 * 23 22 20 47 47 H 1.08999 * 110.40697 * 100.81942 * 28 11 9 48 48 H 1.08998 * 110.40769 * 338.39232 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3049 1.0806 0.0000 4 7 3.5782 0.6478 0.0052 5 6 3.5766 -0.6548 -0.0007 6 6 4.8004 -1.5340 -0.0013 7 8 5.1877 -1.8122 1.3458 8 6 6.3450 -2.6429 1.4581 9 6 6.6607 -2.8704 2.9140 10 8 5.9636 -2.3701 3.7711 11 7 7.7183 -3.6291 3.2637 12 6 8.6783 -4.3175 2.3695 13 6 10.0502 -4.1296 3.0522 14 1 10.6586 -5.0262 2.9331 15 6 10.7750 -2.9148 2.4694 16 6 9.7250 -3.8963 4.5422 17 1 10.1737 -4.6783 5.1549 18 6 10.2256 -2.5205 4.9867 19 7 9.9828 -2.3529 6.4217 20 6 10.3500 -1.1912 7.0471 21 1 10.8187 -0.3988 6.4825 22 6 10.1205 -1.0325 8.4069 23 7 9.5497 -1.9984 9.0950 24 14 10.6219 0.5518 9.2600 25 1 9.9067 1.6958 8.6395 26 1 10.2700 0.4711 10.7004 27 1 12.0870 0.7482 9.1181 28 6 8.1847 -3.9640 4.6293 29 8 2.3075 -1.0840 -0.0004 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.9822 2.1112 0.0004 34 1 5.6146 -1.0230 -0.5153 35 1 4.5761 -2.4686 -0.5153 36 1 7.1911 -2.1546 0.9746 37 1 6.1531 -3.6007 0.9742 38 1 8.6780 -3.8541 1.3829 39 1 8.4337 -5.3769 2.2929 40 1 11.7044 -2.7502 3.0146 41 1 10.9976 -3.0946 1.4176 42 1 10.1392 -2.0341 2.5608 43 1 11.2942 -2.4408 4.7872 44 1 9.6941 -1.7449 4.4353 45 1 9.5615 -3.0644 6.9288 46 1 9.3890 -1.8873 10.0452 47 1 7.8632 -4.9683 4.9051 48 1 7.8121 -3.2340 5.3479 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569842950.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:44 Heat of formation + Delta-G solvation = -61.866816 kcal Electronic energy + Delta-G solvation = -28941.829680 eV Core-core repulsion = 24805.381721 eV Total energy + Delta-G solvation = -4136.447959 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.42231 -41.31260 -39.62193 -38.46642 -36.39968 -35.87254 -34.24922 -33.73633 -32.84179 -31.28415 -30.29885 -28.81842 -27.36979 -26.62340 -26.07938 -24.70675 -23.41570 -23.29074 -22.19802 -20.52733 -20.27798 -19.14334 -18.73156 -18.18223 -17.83340 -17.70408 -17.20449 -16.92975 -16.70641 -16.41913 -15.64864 -15.51420 -15.40823 -15.38936 -14.99564 -14.57053 -14.37791 -14.25107 -13.92439 -13.89394 -13.64766 -13.42094 -13.28905 -13.14475 -13.05718 -13.01081 -12.84526 -12.72815 -12.63226 -12.47949 -12.23533 -11.88271 -11.66711 -11.64181 -11.55954 -11.24642 -10.93435 -10.90585 -10.90196 -9.78960 -9.74041 -9.00865 -7.98568 -5.26718 0.20562 1.30366 1.41134 1.45973 1.51478 1.54331 1.61552 1.81373 2.52573 2.76345 3.20103 3.34258 3.47535 3.60784 3.74351 3.78321 3.85979 3.98024 4.05373 4.12637 4.18431 4.19341 4.25936 4.35579 4.38183 4.45170 4.59918 4.60119 4.65409 4.65812 4.73200 4.83408 4.90606 4.95450 4.96769 4.98156 5.12267 5.14191 5.18921 5.23476 5.30098 5.43058 5.46004 5.61982 5.84041 6.24522 6.56345 6.60610 7.12805 7.29875 8.07758 8.29364 9.24961 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.010705 B = 0.002439 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2614.961001 B =11477.144005 C =13194.497643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.038 4.038 3 C -0.070 4.070 4 N -0.493 5.493 5 C 0.165 3.835 6 C 0.160 3.840 7 O -0.403 6.403 8 C 0.061 3.939 9 C 0.517 3.483 10 O -0.591 6.591 11 N -0.617 5.617 12 C 0.101 3.899 13 C -0.089 4.089 14 H 0.121 0.879 15 C -0.147 4.147 16 C -0.100 4.100 17 H 0.092 0.908 18 C 0.164 3.836 19 N -0.746 5.746 20 C -0.247 4.247 21 H 0.071 0.929 22 C -0.078 4.078 23 N -0.969 5.969 24 Si 0.973 3.027 25 H -0.285 1.285 26 H -0.292 1.292 27 H -0.271 1.271 28 C 0.110 3.890 29 O -0.208 6.208 30 H 0.084 0.916 31 H 0.104 0.896 32 H 0.116 0.884 33 H 0.209 0.791 34 H 0.120 0.880 35 H 0.121 0.879 36 H 0.119 0.881 37 H 0.132 0.868 38 H 0.114 0.886 39 H 0.107 0.893 40 H 0.051 0.949 41 H 0.088 0.912 42 H 0.034 0.966 43 H 0.032 0.968 44 H 0.001 0.999 45 H 0.373 0.627 46 H 0.251 0.749 47 H 0.086 0.914 48 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.359 -6.465 -29.567 31.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.091 4.091 3 C -0.208 4.208 4 N -0.224 5.224 5 C -0.041 4.041 6 C 0.084 3.916 7 O -0.321 6.321 8 C -0.017 4.017 9 C 0.306 3.694 10 O -0.471 6.471 11 N -0.351 5.351 12 C -0.020 4.020 13 C -0.109 4.109 14 H 0.139 0.861 15 C -0.204 4.204 16 C -0.120 4.120 17 H 0.110 0.890 18 C 0.039 3.961 19 N -0.389 5.389 20 C -0.379 4.379 21 H 0.088 0.912 22 C -0.270 4.270 23 N -0.619 5.619 24 Si 0.802 3.198 25 H -0.211 1.211 26 H -0.218 1.218 27 H -0.197 1.197 28 C -0.013 4.013 29 O -0.095 6.095 30 H 0.103 0.897 31 H 0.122 0.878 32 H 0.134 0.866 33 H 0.225 0.775 34 H 0.137 0.863 35 H 0.139 0.861 36 H 0.136 0.864 37 H 0.149 0.851 38 H 0.132 0.868 39 H 0.125 0.875 40 H 0.070 0.930 41 H 0.107 0.893 42 H 0.053 0.947 43 H 0.050 0.950 44 H 0.019 0.981 45 H 0.204 0.796 46 H 0.060 0.940 47 H 0.104 0.896 48 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -10.292 -5.602 -28.997 31.276 hybrid contribution -0.535 0.602 1.561 1.756 sum -10.828 -5.001 -27.437 29.917 Atomic orbital electron populations 1.20561 0.80506 1.05480 1.05857 1.24445 0.96900 0.83761 1.04034 1.23612 0.87092 1.02135 1.07994 1.70394 1.24975 1.10113 1.16930 1.26192 0.84807 0.90237 1.02882 1.20843 0.88649 0.97969 0.84155 1.88029 1.46737 1.70809 1.26564 1.22354 0.89783 0.98073 0.91509 1.20780 0.79326 0.77238 0.92026 1.90765 1.51186 1.50952 1.54220 1.48974 1.27695 1.49233 1.09216 1.22952 0.85932 0.98860 0.94248 1.22151 0.96756 1.00874 0.91075 0.86093 1.21916 0.99832 0.96811 1.01845 1.22290 0.93601 0.97272 0.98795 0.89021 1.20934 0.97009 0.94833 0.83370 1.42636 1.73247 1.17614 1.05384 1.19558 1.31561 0.94820 0.91922 0.91153 1.25594 1.02479 1.01453 0.97474 1.69807 1.50231 1.34401 1.07508 0.85217 0.78339 0.79181 0.77090 1.21116 1.21795 1.19683 1.22318 0.94401 1.00181 0.84406 1.84391 1.18032 1.37565 1.69537 0.89682 0.87769 0.86595 0.77464 0.86277 0.86139 0.86388 0.85073 0.86763 0.87519 0.92969 0.89332 0.94687 0.95014 0.98128 0.79564 0.93981 0.89614 0.94483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.60 10.43 71.24 0.74 0.14 16 2 C -0.04 -0.74 7.39 24.79 0.18 -0.56 16 3 C -0.07 -1.53 11.80 83.39 0.98 -0.55 16 4 N -0.49 -13.79 11.29 -303.83 -3.43 -17.22 16 5 C 0.17 4.15 7.97 88.34 0.70 4.85 16 6 C 0.16 2.82 6.56 71.23 0.47 3.29 16 7 O -0.40 -10.86 9.86 -129.94 -1.28 -12.14 16 8 C 0.06 1.18 5.40 71.24 0.38 1.56 16 9 C 0.52 16.75 7.99 87.66 0.70 17.45 16 10 O -0.59 -28.03 16.77 15.98 0.27 -27.76 16 11 N -0.62 -16.78 3.32 -807.88 -2.68 -19.46 16 12 C 0.10 1.44 6.47 86.53 0.56 2.00 16 13 C -0.09 -1.61 3.65 -9.89 -0.04 -1.64 16 14 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 15 C -0.15 -2.80 7.93 71.98 0.57 -2.23 16 16 C -0.10 -3.00 3.11 -9.88 -0.03 -3.03 16 17 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 18 C 0.16 6.80 4.41 86.38 0.38 7.18 16 19 N -0.75 -40.38 5.16 -343.43 -1.77 -42.16 16 20 C -0.25 -14.79 9.99 84.03 0.84 -13.95 16 21 H 0.07 4.08 7.83 -2.91 -0.02 4.06 16 22 C -0.08 -4.77 5.50 84.86 0.47 -4.30 16 23 N -0.97 -62.65 13.06 21.65 0.28 -62.36 16 24 Si 0.97 49.13 29.55 68.60 2.03 51.16 16 25 H -0.28 -14.17 7.11 99.48 0.71 -13.47 16 26 H -0.29 -14.66 7.11 99.48 0.71 -13.96 16 27 H -0.27 -12.90 7.11 99.48 0.71 -12.19 16 28 C 0.11 3.70 6.44 86.55 0.56 4.26 16 29 O -0.21 -5.03 10.78 -3.70 -0.04 -5.07 16 30 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.12 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.21 3.14 8.06 -2.91 -0.02 3.12 16 34 H 0.12 1.48 8.14 -2.38 -0.02 1.47 16 35 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.12 1.47 7.95 -2.39 -0.02 1.45 16 37 H 0.13 1.23 8.14 -2.38 -0.02 1.21 16 38 H 0.11 0.84 7.02 -2.39 -0.02 0.83 16 39 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.05 1.15 6.71 -2.38 -0.02 1.13 16 41 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.03 0.85 6.90 -2.39 -0.02 0.83 16 43 H 0.03 1.28 6.58 -2.39 -0.02 1.26 16 44 H 0.00 0.04 7.01 -2.39 -0.02 0.02 16 45 H 0.37 21.30 7.50 -92.71 -0.69 20.60 16 46 H 0.25 15.73 8.31 -92.71 -0.77 14.96 16 47 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 48 H 0.04 1.71 7.20 -2.39 -0.02 1.69 16 Total: -1.00 -97.28 396.78 1.13 -96.15 By element: Atomic # 1 Polarization: 24.13 SS G_CDS: 0.28 Total: 24.40 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: 7.48 Total: 14.47 kcal Atomic # 7 Polarization: -133.61 SS G_CDS: -7.60 Total: -141.21 kcal Atomic # 8 Polarization: -43.92 SS G_CDS: -1.05 Total: -44.98 kcal Atomic # 14 Polarization: 49.13 SS G_CDS: 2.03 Total: 51.16 kcal Total: -97.28 1.13 -96.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569842950.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.285 kcal (2) G-P(sol) polarization free energy of solvation -97.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds