Wall clock time and date at job start Tue Mar 31 2020 20:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34180 * 127.01781 * 2 1 4 4 O 1.34224 * 109.12129 * 180.26843 * 3 2 1 5 5 C 1.33652 * 110.90470 * 359.71008 * 4 3 2 6 6 C 1.50703 * 125.80023 * 180.02562 * 5 4 3 7 7 C 1.36412 * 108.40257 * 359.97438 * 5 4 3 8 8 C 1.47376 * 127.19575 * 180.02562 * 7 5 4 9 9 O 1.21607 * 120.00542 * 90.02207 * 8 7 5 10 10 N 1.34782 * 119.99626 * 270.02218 * 8 7 5 11 11 C 1.46499 * 120.00273 * 179.97438 * 10 8 7 12 12 C 1.52992 * 109.47658 * 180.02562 * 11 10 8 13 13 H 1.09002 * 109.47103 * 64.99700 * 12 11 10 14 14 C 1.52997 * 109.47482 * 184.99947 * 12 11 10 15 15 N 1.46902 * 109.47181 * 305.00169 * 12 11 10 16 16 C 1.46900 * 110.99736 * 298.95354 * 15 12 11 17 17 C 1.46895 * 111.00186 * 174.99766 * 15 12 11 18 18 C 1.50703 * 109.46874 * 189.99595 * 17 15 12 19 19 O 1.21295 * 120.00359 * 0.02562 * 18 17 15 20 20 N 1.34778 * 119.99693 * 179.97438 * 18 17 15 21 21 C 1.37102 * 120.00091 * 180.02562 * 20 18 17 22 22 H 1.08001 * 119.99374 * 359.97438 * 21 20 18 23 23 C 1.38943 * 120.00514 * 180.02562 * 21 20 18 24 24 N 1.31420 * 119.99495 * 359.97438 * 23 21 20 25 25 Si 1.86794 * 120.00457 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47041 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47483 * 119.99736 * 25 23 21 28 28 H 1.48505 * 109.47138 * 239.99948 * 25 23 21 29 29 H 1.09004 * 109.47116 * 270.19815 * 1 2 3 30 30 H 1.08993 * 109.47329 * 30.20172 * 1 2 3 31 31 H 1.09000 * 109.47049 * 150.20449 * 1 2 3 32 32 H 1.07996 * 125.44483 * 359.97438 * 3 2 1 33 33 H 1.09003 * 109.46821 * 270.00366 * 6 5 4 34 34 H 1.08998 * 109.47121 * 29.99287 * 6 5 4 35 35 H 1.08992 * 109.47665 * 149.99751 * 6 5 4 36 36 H 0.97002 * 119.99790 * 359.97438 * 10 8 7 37 37 H 1.09001 * 109.46952 * 59.99319 * 11 10 8 38 38 H 1.09004 * 109.46722 * 300.00399 * 11 10 8 39 39 H 1.09002 * 109.47153 * 59.99783 * 14 12 11 40 40 H 1.09001 * 109.46832 * 299.99974 * 14 12 11 41 41 H 1.09004 * 109.47261 * 179.97438 * 14 12 11 42 42 H 1.08997 * 109.47292 * 59.99623 * 16 15 12 43 43 H 1.09002 * 109.47267 * 179.97438 * 16 15 12 44 44 H 1.09000 * 109.47210 * 300.00139 * 16 15 12 45 45 H 1.08999 * 109.47066 * 309.99575 * 17 15 12 46 46 H 1.09001 * 109.47511 * 70.00176 * 17 15 12 47 47 H 0.97002 * 120.00164 * 0.02562 * 20 18 17 48 48 H 0.97001 * 119.99441 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3149 1.0714 0.0000 4 8 3.5921 0.6589 -0.0059 5 6 3.6623 -0.6758 -0.0037 6 6 4.9292 -1.4920 -0.0082 7 6 2.3923 -1.1738 0.0046 8 6 1.9915 -2.5919 0.0103 9 8 1.8315 -3.1745 1.0658 10 7 1.8021 -3.2433 -1.1543 11 6 1.4042 -4.6532 -1.1488 12 6 1.2584 -5.1477 -2.5893 13 1 2.2307 -5.1244 -3.0816 14 6 0.7233 -6.5811 -2.5848 15 7 0.3221 -4.2777 -3.3134 16 6 -1.0085 -4.3034 -2.6915 17 6 0.2473 -4.6502 -4.7323 18 6 -0.5221 -3.5976 -5.4881 19 8 -0.9642 -2.6318 -4.9023 20 7 -0.7180 -3.7288 -6.8151 21 6 -1.4175 -2.7710 -7.5028 22 1 -1.8119 -1.9115 -6.9810 23 6 -1.6200 -2.9064 -8.8707 24 7 -1.1406 -3.9525 -9.5054 25 14 -2.5737 -1.6018 -9.8075 26 1 -3.0041 -0.5341 -8.8694 27 1 -1.7067 -1.0157 -10.8611 28 1 -3.7691 -2.2186 -10.4367 29 1 -0.3633 0.0036 1.0277 30 1 -0.3633 0.8881 -0.5169 31 1 -0.3633 -0.8918 -0.5107 32 1 1.9894 2.1011 -0.0004 33 1 5.2296 -1.6907 -1.0370 34 1 5.7191 -0.9395 0.5006 35 1 4.7552 -2.4358 0.5083 36 1 1.9293 -2.7786 -1.9962 37 1 0.4518 -4.7599 -0.6295 38 1 2.1648 -5.2434 -0.6376 39 1 -0.2490 -6.6044 -2.0926 40 1 1.4181 -7.2266 -2.0476 41 1 0.6190 -6.9332 -3.6112 42 1 -0.9347 -3.9564 -1.6609 43 1 -1.6819 -3.6505 -3.2469 44 1 -1.3963 -5.3220 -2.7049 45 1 1.2548 -4.7276 -5.1412 46 1 -0.2592 -5.6104 -4.8298 47 1 -0.3641 -4.5009 -7.2836 48 1 -1.2816 -4.0469 -10.4604 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570709230.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:03 Heat of formation + Delta-G solvation = -55.275535 kcal Electronic energy + Delta-G solvation = -29684.346121 eV Core-core repulsion = 25548.183982 eV Total energy + Delta-G solvation = -4136.162140 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.62484 -39.69284 -38.75256 -37.28476 -34.31719 -33.99684 -33.76287 -32.65951 -31.28790 -30.91203 -28.41034 -27.93256 -26.87894 -26.13435 -25.37533 -23.91500 -22.74585 -20.24505 -19.98892 -19.57394 -19.08980 -17.85901 -17.72855 -16.62008 -16.51374 -15.95985 -15.91541 -15.44428 -14.93471 -14.75803 -14.69422 -14.23910 -14.09603 -13.66653 -13.58467 -13.42824 -13.37719 -13.15375 -13.04033 -13.00669 -12.77207 -12.70236 -12.41922 -12.29787 -11.88393 -11.79107 -11.47446 -11.41429 -11.24252 -11.23122 -10.95249 -10.76854 -10.36320 -10.24648 -10.08903 -9.50533 -9.47575 -9.00931 -8.56971 -8.49167 -8.00168 -7.88071 -6.44113 -3.84793 1.52205 2.16584 2.54879 2.73684 3.14287 3.25148 3.31577 3.33189 3.87868 3.94243 4.22432 4.34640 4.67981 4.72146 4.86683 4.92815 5.02139 5.10551 5.17645 5.18956 5.19492 5.24014 5.40762 5.43165 5.49162 5.53022 5.55290 5.62200 5.71339 5.75992 5.84007 5.86359 5.88028 5.90940 5.97697 6.03118 6.15374 6.25521 6.34841 6.45972 6.55627 6.96431 7.20730 7.32475 7.53252 7.60127 8.04387 8.24784 8.59460 9.16219 9.52392 10.04047 10.73703 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.011459 B = 0.002851 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2442.880319 B = 9817.236561 C =11223.202900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.141 4.141 3 C -0.043 4.043 4 O -0.174 6.174 5 C 0.039 3.961 6 C -0.079 4.079 7 C -0.225 4.225 8 C 0.592 3.408 9 O -0.545 6.545 10 N -0.703 5.703 11 C 0.130 3.870 12 C 0.064 3.936 13 H 0.089 0.911 14 C -0.186 4.186 15 N -0.510 5.510 16 C 0.017 3.983 17 C 0.045 3.955 18 C 0.444 3.556 19 O -0.577 6.577 20 N -0.565 5.565 21 C -0.297 4.297 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.928 3.072 26 H -0.268 1.268 27 H -0.281 1.281 28 H -0.282 1.282 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.207 0.793 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.414 0.586 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.065 0.935 42 H 0.060 0.940 43 H 0.095 0.905 44 H 0.020 0.980 45 H 0.087 0.913 46 H 0.050 0.950 47 H 0.391 0.609 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.658 0.371 16.015 18.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.143 4.143 3 C -0.109 4.109 4 O -0.071 6.071 5 C -0.013 4.013 6 C -0.135 4.135 7 C -0.230 4.230 8 C 0.378 3.622 9 O -0.423 6.423 10 N -0.354 5.354 11 C 0.006 3.994 12 C -0.046 4.046 13 H 0.107 0.893 14 C -0.245 4.245 15 N -0.234 5.234 16 C -0.131 4.131 17 C -0.087 4.087 18 C 0.229 3.771 19 O -0.461 6.461 20 N -0.202 5.202 21 C -0.427 4.427 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.543 5.543 25 Si 0.755 3.245 26 H -0.192 1.192 27 H -0.207 1.207 28 H -0.208 1.208 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.223 0.777 33 H 0.107 0.893 34 H 0.101 0.899 35 H 0.108 0.892 36 H 0.251 0.749 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.079 0.921 43 H 0.114 0.886 44 H 0.038 0.962 45 H 0.105 0.895 46 H 0.068 0.932 47 H 0.224 0.776 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 9.635 1.218 16.968 19.551 hybrid contribution -0.746 -0.576 -1.416 1.701 sum 8.889 0.642 15.553 17.925 Atomic orbital electron populations 1.20210 0.88457 1.03513 1.02213 1.21369 0.96950 0.90455 1.05519 1.23614 0.79517 0.99566 1.08194 1.83701 1.29679 1.21809 1.71893 1.22464 0.95940 0.80925 1.01996 1.20418 0.91190 0.97814 1.04093 1.21011 0.93191 0.94070 1.14684 1.17277 0.76594 0.84599 0.83772 1.90778 1.51776 1.68364 1.31352 1.45879 1.68525 1.12088 1.08935 1.21419 1.00613 0.81477 0.95915 1.22045 0.97701 0.90995 0.93821 0.89327 1.22404 1.02185 0.97074 1.02863 1.61817 1.10055 1.50412 1.01076 1.22595 0.90543 0.99997 0.99962 1.21876 1.01111 0.96979 0.88704 1.19736 0.85687 0.88656 0.82997 1.90490 1.54459 1.33143 1.67974 1.41876 1.48994 1.23112 1.06169 1.19735 1.29615 1.02892 0.90460 0.87885 1.25252 0.98104 0.97779 0.96822 1.69623 1.45985 1.28499 1.10242 0.85817 0.78957 0.80379 0.79302 1.19226 1.20748 1.20798 0.91262 0.90971 0.90939 0.77678 0.89326 0.89936 0.89211 0.74937 0.91311 0.91171 0.91812 0.91899 0.91637 0.92149 0.88622 0.96171 0.89500 0.93194 0.77551 0.91945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.01 10.38 36.01 0.37 -0.63 16 2 C -0.14 -1.79 6.38 -102.49 -0.65 -2.44 16 3 C -0.04 -0.46 11.96 29.30 0.35 -0.11 16 4 O -0.17 -2.05 10.52 7.63 0.08 -1.97 16 5 C 0.04 0.45 7.37 -34.96 -0.26 0.20 16 6 C -0.08 -0.65 10.24 36.01 0.37 -0.28 16 7 C -0.23 -3.06 6.07 -103.28 -0.63 -3.69 16 8 C 0.59 8.59 7.25 -12.54 -0.09 8.50 16 9 O -0.54 -9.51 17.11 5.27 0.09 -9.42 16 10 N -0.70 -9.01 5.39 -61.40 -0.33 -9.35 16 11 C 0.13 1.52 4.68 -4.05 -0.02 1.50 16 12 C 0.06 0.72 2.50 -67.72 -0.17 0.55 16 13 H 0.09 0.93 8.03 -51.93 -0.42 0.51 16 14 C -0.19 -1.85 8.50 37.16 0.32 -1.54 16 15 N -0.51 -7.55 3.93 -236.34 -0.93 -8.48 16 16 C 0.02 0.26 8.46 60.06 0.51 0.77 16 17 C 0.04 0.73 4.89 -4.98 -0.02 0.71 16 18 C 0.44 9.94 7.47 -10.98 -0.08 9.85 16 19 O -0.58 -14.75 13.91 5.54 0.08 -14.67 16 20 N -0.56 -13.82 5.29 -10.96 -0.06 -13.88 16 21 C -0.30 -8.09 9.68 -14.93 -0.14 -8.24 16 22 H 0.10 2.95 7.16 -52.49 -0.38 2.58 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 24 N -0.90 -24.13 13.05 55.50 0.72 -23.41 16 25 Si 0.93 20.73 29.55 -169.99 -5.02 15.71 16 26 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 27 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 28 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.21 1.42 8.06 -52.49 -0.42 0.99 16 33 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.09 0.76 7.93 -51.93 -0.41 0.35 16 36 H 0.41 5.43 8.12 -40.82 -0.33 5.10 16 37 H 0.07 0.88 6.70 -51.93 -0.35 0.53 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.06 0.66 6.39 -51.93 -0.33 0.33 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.67 6.75 -51.93 -0.35 0.32 16 42 H 0.06 0.88 6.44 -51.93 -0.33 0.55 16 43 H 0.10 1.83 5.83 -51.93 -0.30 1.53 16 44 H 0.02 0.28 6.28 -51.93 -0.33 -0.05 16 45 H 0.09 1.28 8.00 -51.93 -0.42 0.87 16 46 H 0.05 0.76 6.94 -51.93 -0.36 0.40 16 47 H 0.39 9.20 7.90 -40.82 -0.32 8.88 16 48 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 397.23 15.07 5.99 5.99 Total: -1.00 -33.02 397.23 -6.78 -39.79 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: -7.14 Total: 14.07 kcal Atomic # 6 Polarization: 5.87 SS G_CDS: -0.25 Total: 5.62 kcal Atomic # 7 Polarization: -54.52 SS G_CDS: -0.59 Total: -55.12 kcal Atomic # 8 Polarization: -26.31 SS G_CDS: 0.25 Total: -26.06 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.02 -6.78 -39.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570709230.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.481 kcal (2) G-P(sol) polarization free energy of solvation -33.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds