Wall clock time and date at job start Tue Mar 31 2020 20:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34180 * 127.01781 * 2 1 4 4 O 1.34224 * 109.12129 * 180.26843 * 3 2 1 5 5 C 1.33652 * 110.90470 * 359.71008 * 4 3 2 6 6 C 1.50703 * 125.80023 * 180.02562 * 5 4 3 7 7 C 1.36412 * 108.40257 * 359.97438 * 5 4 3 8 8 C 1.47376 * 127.19575 * 180.02562 * 7 5 4 9 9 O 1.21607 * 120.00542 * 90.02207 * 8 7 5 10 10 N 1.34782 * 119.99626 * 270.02218 * 8 7 5 11 11 C 1.46499 * 120.00273 * 179.97438 * 10 8 7 12 12 C 1.52992 * 109.47658 * 180.02562 * 11 10 8 13 13 H 1.09002 * 109.47103 * 64.99700 * 12 11 10 14 14 C 1.52997 * 109.47482 * 184.99947 * 12 11 10 15 15 N 1.46902 * 109.47181 * 305.00169 * 12 11 10 16 16 C 1.46900 * 110.99736 * 298.95354 * 15 12 11 17 17 C 1.46895 * 111.00186 * 174.99766 * 15 12 11 18 18 C 1.50703 * 109.46874 * 189.99595 * 17 15 12 19 19 O 1.21295 * 120.00359 * 0.02562 * 18 17 15 20 20 N 1.34778 * 119.99693 * 179.97438 * 18 17 15 21 21 C 1.37102 * 120.00091 * 180.02562 * 20 18 17 22 22 H 1.08001 * 119.99374 * 359.97438 * 21 20 18 23 23 C 1.38943 * 120.00514 * 180.02562 * 21 20 18 24 24 N 1.31420 * 119.99495 * 359.97438 * 23 21 20 25 25 Si 1.86794 * 120.00457 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47041 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47483 * 119.99736 * 25 23 21 28 28 H 1.48505 * 109.47138 * 239.99948 * 25 23 21 29 29 H 1.09004 * 109.47116 * 270.19815 * 1 2 3 30 30 H 1.08993 * 109.47329 * 30.20172 * 1 2 3 31 31 H 1.09000 * 109.47049 * 150.20449 * 1 2 3 32 32 H 1.07996 * 125.44483 * 359.97438 * 3 2 1 33 33 H 1.09003 * 109.46821 * 270.00366 * 6 5 4 34 34 H 1.08998 * 109.47121 * 29.99287 * 6 5 4 35 35 H 1.08992 * 109.47665 * 149.99751 * 6 5 4 36 36 H 0.97002 * 119.99790 * 359.97438 * 10 8 7 37 37 H 1.09001 * 109.46952 * 59.99319 * 11 10 8 38 38 H 1.09004 * 109.46722 * 300.00399 * 11 10 8 39 39 H 1.09002 * 109.47153 * 59.99783 * 14 12 11 40 40 H 1.09001 * 109.46832 * 299.99974 * 14 12 11 41 41 H 1.09004 * 109.47261 * 179.97438 * 14 12 11 42 42 H 1.08997 * 109.47292 * 59.99623 * 16 15 12 43 43 H 1.09002 * 109.47267 * 179.97438 * 16 15 12 44 44 H 1.09000 * 109.47210 * 300.00139 * 16 15 12 45 45 H 1.08999 * 109.47066 * 309.99575 * 17 15 12 46 46 H 1.09001 * 109.47511 * 70.00176 * 17 15 12 47 47 H 0.97002 * 120.00164 * 0.02562 * 20 18 17 48 48 H 0.97001 * 119.99441 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3149 1.0714 0.0000 4 8 3.5921 0.6589 -0.0059 5 6 3.6623 -0.6758 -0.0037 6 6 4.9292 -1.4920 -0.0082 7 6 2.3923 -1.1738 0.0046 8 6 1.9915 -2.5919 0.0103 9 8 1.8315 -3.1745 1.0658 10 7 1.8021 -3.2433 -1.1543 11 6 1.4042 -4.6532 -1.1488 12 6 1.2584 -5.1477 -2.5893 13 1 2.2307 -5.1244 -3.0816 14 6 0.7233 -6.5811 -2.5848 15 7 0.3221 -4.2777 -3.3134 16 6 -1.0085 -4.3034 -2.6915 17 6 0.2473 -4.6502 -4.7323 18 6 -0.5221 -3.5976 -5.4881 19 8 -0.9642 -2.6318 -4.9023 20 7 -0.7180 -3.7288 -6.8151 21 6 -1.4175 -2.7710 -7.5028 22 1 -1.8119 -1.9115 -6.9810 23 6 -1.6200 -2.9064 -8.8707 24 7 -1.1406 -3.9525 -9.5054 25 14 -2.5737 -1.6018 -9.8075 26 1 -3.0041 -0.5341 -8.8694 27 1 -1.7067 -1.0157 -10.8611 28 1 -3.7691 -2.2186 -10.4367 29 1 -0.3633 0.0036 1.0277 30 1 -0.3633 0.8881 -0.5169 31 1 -0.3633 -0.8918 -0.5107 32 1 1.9894 2.1011 -0.0004 33 1 5.2296 -1.6907 -1.0370 34 1 5.7191 -0.9395 0.5006 35 1 4.7552 -2.4358 0.5083 36 1 1.9293 -2.7786 -1.9962 37 1 0.4518 -4.7599 -0.6295 38 1 2.1648 -5.2434 -0.6376 39 1 -0.2490 -6.6044 -2.0926 40 1 1.4181 -7.2266 -2.0476 41 1 0.6190 -6.9332 -3.6112 42 1 -0.9347 -3.9564 -1.6609 43 1 -1.6819 -3.6505 -3.2469 44 1 -1.3963 -5.3220 -2.7049 45 1 1.2548 -4.7276 -5.1412 46 1 -0.2592 -5.6104 -4.8298 47 1 -0.3641 -4.5009 -7.2836 48 1 -1.2816 -4.0469 -10.4604 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570709230.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:02 Heat of formation + Delta-G solvation = -79.510781 kcal Electronic energy + Delta-G solvation = -29685.397040 eV Core-core repulsion = 25548.183982 eV Total energy + Delta-G solvation = -4137.213059 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.51672 -40.87983 -40.21681 -38.72201 -35.96681 -35.28356 -34.86674 -33.48040 -33.23771 -32.00590 -29.39962 -29.21781 -27.79965 -27.00800 -26.99696 -25.39830 -23.76453 -21.43824 -21.02903 -20.72324 -20.45322 -19.78188 -18.70260 -17.95796 -17.53129 -17.09174 -16.92906 -16.75857 -16.47527 -16.22956 -15.95007 -15.70015 -15.31337 -14.98585 -14.83145 -14.41872 -14.37759 -14.17505 -14.15818 -13.81919 -13.76013 -13.63752 -13.57377 -13.43518 -13.29551 -13.08452 -12.89800 -12.81382 -12.43053 -12.36616 -12.31029 -12.25501 -12.10875 -11.77288 -11.42602 -11.23505 -10.44383 -10.24192 -10.09026 -9.95978 -9.43386 -9.16674 -8.44267 -5.91920 0.63883 1.24189 1.37245 1.42635 1.44205 1.56078 1.90212 2.10617 2.28286 2.33972 2.78178 3.23401 3.46260 3.54379 3.72193 3.78158 4.00800 4.07123 4.20622 4.26793 4.30665 4.35955 4.36201 4.55346 4.57310 4.60000 4.60433 4.64520 4.67442 4.70974 4.74030 4.79039 4.86139 4.94872 4.99702 5.02291 5.19783 5.22387 5.30409 5.42434 5.44044 5.44807 5.89633 6.07349 6.08267 6.20857 6.51016 6.64535 7.15303 7.17097 7.61512 8.17724 8.73378 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.011459 B = 0.002851 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2442.880319 B = 9817.236561 C =11223.202900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.173 4.173 3 C -0.032 4.032 4 O -0.177 6.177 5 C 0.041 3.959 6 C -0.078 4.078 7 C -0.261 4.261 8 C 0.596 3.404 9 O -0.581 6.581 10 N -0.695 5.695 11 C 0.131 3.869 12 C 0.071 3.929 13 H 0.107 0.893 14 C -0.182 4.182 15 N -0.523 5.523 16 C 0.027 3.973 17 C 0.059 3.941 18 C 0.443 3.557 19 O -0.612 6.612 20 N -0.576 5.576 21 C -0.328 4.328 22 H 0.078 0.922 23 C -0.013 4.013 24 N -0.921 5.921 25 Si 0.989 3.011 26 H -0.274 1.274 27 H -0.272 1.272 28 H -0.273 1.273 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.047 0.953 32 H 0.243 0.757 33 H 0.105 0.895 34 H 0.102 0.898 35 H 0.086 0.914 36 H 0.413 0.587 37 H 0.056 0.944 38 H 0.086 0.914 39 H 0.057 0.943 40 H 0.085 0.915 41 H 0.066 0.934 42 H 0.063 0.937 43 H 0.054 0.946 44 H 0.036 0.964 45 H 0.112 0.888 46 H 0.069 0.931 47 H 0.395 0.605 48 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.083 0.090 15.857 19.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.174 4.174 3 C -0.097 4.097 4 O -0.074 6.074 5 C -0.011 4.011 6 C -0.134 4.134 7 C -0.265 4.265 8 C 0.382 3.618 9 O -0.462 6.462 10 N -0.345 5.345 11 C 0.007 3.993 12 C -0.037 4.037 13 H 0.125 0.875 14 C -0.241 4.241 15 N -0.247 5.247 16 C -0.121 4.121 17 C -0.072 4.072 18 C 0.230 3.770 19 O -0.498 6.498 20 N -0.214 5.214 21 C -0.457 4.457 22 H 0.096 0.904 23 C -0.213 4.213 24 N -0.563 5.563 25 Si 0.813 3.187 26 H -0.199 1.199 27 H -0.197 1.197 28 H -0.198 1.198 29 H 0.092 0.908 30 H 0.106 0.894 31 H 0.066 0.934 32 H 0.259 0.741 33 H 0.123 0.877 34 H 0.121 0.879 35 H 0.105 0.895 36 H 0.250 0.750 37 H 0.075 0.925 38 H 0.104 0.896 39 H 0.076 0.924 40 H 0.103 0.897 41 H 0.085 0.915 42 H 0.082 0.918 43 H 0.073 0.927 44 H 0.054 0.946 45 H 0.130 0.870 46 H 0.087 0.913 47 H 0.229 0.771 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 11.076 0.909 16.796 20.140 hybrid contribution -1.165 -0.478 -1.293 1.805 sum 9.911 0.431 15.503 18.405 Atomic orbital electron populations 1.20163 0.88319 1.03016 1.02421 1.21627 0.97473 0.91016 1.07319 1.24277 0.78785 1.00648 1.06036 1.83730 1.30146 1.21788 1.71707 1.23032 0.96536 0.81093 1.00393 1.20569 0.90195 0.97324 1.05347 1.21164 0.94506 0.93862 1.16969 1.17422 0.75912 0.84975 0.83495 1.90745 1.53688 1.69281 1.32514 1.45888 1.67644 1.12557 1.08434 1.21501 1.00508 0.81010 0.96263 1.22095 0.97446 0.91201 0.92980 0.87518 1.22367 1.02374 0.96099 1.03243 1.61733 1.10142 1.52253 1.00545 1.22377 0.90454 0.99902 0.99344 1.21734 1.01463 0.95144 0.88896 1.20817 0.84576 0.89168 0.82441 1.90478 1.55598 1.35108 1.68602 1.41939 1.49527 1.22952 1.07006 1.19655 1.31369 1.03373 0.91330 0.90426 1.25969 0.98598 0.99637 0.97063 1.69678 1.46434 1.29462 1.10707 0.84927 0.77998 0.77878 0.77894 1.19855 1.19693 1.19822 0.90751 0.89373 0.93429 0.74093 0.87700 0.87942 0.89544 0.75019 0.92519 0.89591 0.92426 0.89653 0.91483 0.91818 0.92706 0.94567 0.86960 0.91292 0.77103 0.91445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.95 10.38 71.24 0.74 -1.21 16 2 C -0.17 -4.36 6.38 -18.49 -0.12 -4.48 16 3 C -0.03 -0.65 11.96 66.89 0.80 0.15 16 4 O -0.18 -3.91 10.52 4.39 0.05 -3.86 16 5 C 0.04 0.94 7.37 25.26 0.19 1.13 16 6 C -0.08 -1.17 10.24 71.24 0.73 -0.44 16 7 C -0.26 -7.10 6.07 -18.99 -0.12 -7.22 16 8 C 0.60 17.47 7.25 86.65 0.63 18.10 16 9 O -0.58 -20.67 17.11 -4.05 -0.07 -20.74 16 10 N -0.70 -17.60 5.39 -466.42 -2.51 -20.11 16 11 C 0.13 2.89 4.68 86.38 0.40 3.29 16 12 C 0.07 1.44 2.50 44.91 0.11 1.55 16 13 H 0.11 1.86 8.03 -2.39 -0.02 1.84 16 14 C -0.18 -3.08 8.50 71.98 0.61 -2.47 16 15 N -0.52 -14.92 3.93 -901.64 -3.54 -18.46 16 16 C 0.03 0.84 8.46 127.69 1.08 1.92 16 17 C 0.06 1.84 4.89 85.56 0.42 2.25 16 18 C 0.44 19.99 7.47 87.66 0.66 20.64 16 19 O -0.61 -32.29 13.91 -3.08 -0.04 -32.33 16 20 N -0.58 -28.58 5.29 -306.98 -1.62 -30.20 16 21 C -0.33 -18.22 9.68 84.04 0.81 -17.41 16 22 H 0.08 4.63 7.16 -2.91 -0.02 4.61 16 23 C -0.01 -0.69 5.50 84.92 0.47 -0.23 16 24 N -0.92 -48.97 13.05 21.66 0.28 -48.69 16 25 Si 0.99 42.49 29.55 68.60 2.03 44.52 16 26 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 27 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 28 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 29 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.24 2.72 8.06 -2.91 -0.02 2.70 16 33 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.09 1.36 7.93 -2.39 -0.02 1.34 16 36 H 0.41 10.70 8.12 -92.71 -0.75 9.94 16 37 H 0.06 1.41 6.70 -2.39 -0.02 1.40 16 38 H 0.09 1.67 8.14 -2.39 -0.02 1.66 16 39 H 0.06 1.06 6.39 -2.39 -0.02 1.05 16 40 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.07 1.15 6.75 -2.38 -0.02 1.13 16 42 H 0.06 1.90 6.44 -2.39 -0.02 1.88 16 43 H 0.05 2.17 5.83 -2.39 -0.01 2.16 16 44 H 0.04 0.99 6.28 -2.39 -0.01 0.97 16 45 H 0.11 3.01 8.00 -2.39 -0.02 2.99 16 46 H 0.07 1.95 6.94 -2.39 -0.02 1.93 16 47 H 0.40 18.62 7.90 -92.71 -0.73 17.89 16 48 H 0.28 13.75 8.31 -92.71 -0.77 12.98 16 Total: -1.00 -73.58 397.23 1.50 -72.08 By element: Atomic # 1 Polarization: 42.68 SS G_CDS: -0.48 Total: 42.20 kcal Atomic # 6 Polarization: 8.18 SS G_CDS: 7.41 Total: 15.59 kcal Atomic # 7 Polarization: -110.07 SS G_CDS: -7.39 Total: -117.47 kcal Atomic # 8 Polarization: -56.86 SS G_CDS: -0.07 Total: -56.93 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Total: -73.58 1.50 -72.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570709230.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.428 kcal (2) G-P(sol) polarization free energy of solvation -73.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds