Wall clock time and date at job start Tue Mar 31 2020 20:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34170 * 127.01903 * 2 1 4 4 O 1.34214 * 109.12211 * 180.02562 * 3 2 1 5 5 C 1.33649 * 110.91125 * 0.02562 * 4 3 2 6 6 C 1.50696 * 125.80587 * 180.02562 * 5 4 3 7 7 C 1.36417 * 108.39422 * 359.71372 * 5 4 3 8 8 C 1.47378 * 127.19419 * 180.30785 * 7 5 4 9 9 O 1.21619 * 119.99682 * 270.14644 * 8 7 5 10 10 N 1.34773 * 120.00229 * 90.14599 * 8 7 5 11 11 C 1.46507 * 119.99951 * 180.02562 * 10 8 7 12 12 C 1.53003 * 109.47016 * 175.18933 * 11 10 8 13 13 H 1.09007 * 109.46941 * 295.31473 * 12 11 10 14 14 C 1.52998 * 109.46894 * 175.31863 * 12 11 10 15 15 N 1.46900 * 109.46919 * 55.31365 * 12 11 10 16 16 C 1.46906 * 110.99556 * 192.49157 * 15 12 11 17 17 C 1.46895 * 110.99789 * 68.54587 * 15 12 11 18 18 C 1.50701 * 109.47122 * 189.99497 * 17 15 12 19 19 O 1.21294 * 119.99940 * 359.97438 * 18 17 15 20 20 N 1.34781 * 120.00183 * 179.97438 * 18 17 15 21 21 C 1.37095 * 119.99860 * 179.97438 * 20 18 17 22 22 H 1.08000 * 120.00436 * 0.02562 * 21 20 18 23 23 C 1.38953 * 119.99900 * 179.97438 * 21 20 18 24 24 N 1.31415 * 119.99659 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00127 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47146 * 0.02562 * 25 23 21 27 27 H 1.48494 * 109.47303 * 120.00424 * 25 23 21 28 28 H 1.48499 * 109.46829 * 240.00515 * 25 23 21 29 29 H 1.08997 * 109.47025 * 90.02742 * 1 2 3 30 30 H 1.09000 * 109.47366 * 330.02122 * 1 2 3 31 31 H 1.09004 * 109.47120 * 210.02200 * 1 2 3 32 32 H 1.08002 * 125.44134 * 0.02562 * 3 2 1 33 33 H 1.09010 * 109.46923 * 359.97438 * 6 5 4 34 34 H 1.09004 * 109.47072 * 119.97187 * 6 5 4 35 35 H 1.09000 * 109.47499 * 239.97471 * 6 5 4 36 36 H 0.96998 * 120.00044 * 0.02562 * 10 8 7 37 37 H 1.08997 * 109.46950 * 295.19086 * 11 10 8 38 38 H 1.08994 * 109.47117 * 55.19028 * 11 10 8 39 39 H 1.09000 * 109.46780 * 299.99840 * 14 12 11 40 40 H 1.08996 * 109.47130 * 60.00125 * 14 12 11 41 41 H 1.09001 * 109.47026 * 180.02562 * 14 12 11 42 42 H 1.09000 * 109.47075 * 53.76885 * 16 15 12 43 43 H 1.09004 * 109.46828 * 173.75998 * 16 15 12 44 44 H 1.08994 * 109.47236 * 293.76586 * 16 15 12 45 45 H 1.09004 * 109.47135 * 309.99453 * 17 15 12 46 46 H 1.08999 * 109.47844 * 69.99508 * 17 15 12 47 47 H 0.96997 * 119.99882 * 0.02562 * 20 18 17 48 48 H 0.97001 * 119.99599 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3149 1.0713 0.0000 4 8 3.5921 0.6588 -0.0006 5 6 3.6623 -0.6758 -0.0015 6 6 4.9292 -1.4920 -0.0018 7 6 2.3923 -1.1738 0.0049 8 6 1.9914 -2.5920 0.0127 9 8 1.8252 -3.1826 -1.0374 10 7 1.8090 -3.2343 1.1834 11 6 1.4111 -4.6443 1.1910 12 6 1.3898 -5.1603 2.6312 13 1 2.4001 -5.1386 3.0399 14 6 0.8626 -6.5965 2.6506 15 7 0.5140 -4.3062 3.4445 16 6 0.6937 -4.5803 4.8766 17 6 -0.8918 -4.4668 3.0502 18 6 -1.7268 -3.4092 3.7251 19 8 -1.2024 -2.6015 4.4625 20 7 -3.0564 -3.3609 3.5093 21 6 -3.8160 -2.3992 4.1237 22 1 -3.3491 -1.6799 4.7803 23 6 -5.1866 -2.3490 3.9009 24 7 -5.7547 -3.2238 3.1015 25 14 -6.2216 -1.0382 4.7374 26 1 -5.3490 -0.1815 5.5799 27 1 -6.8891 -0.2024 3.7074 28 1 -7.2493 -1.6882 5.5897 29 1 -0.3633 -0.0005 -1.0276 30 1 -0.3634 0.8902 0.5135 31 1 -0.3633 -0.8898 0.5142 32 1 1.9894 2.1011 0.0004 33 1 5.7912 -0.8248 -0.0016 34 1 4.9563 -2.1210 0.8880 35 1 4.9564 -2.1204 -0.8920 36 1 1.9413 -2.7631 2.0208 37 1 0.4172 -4.7436 0.7547 38 1 2.1240 -5.2262 0.6071 39 1 -0.1476 -6.6182 2.2418 40 1 1.5125 -7.2302 2.0471 41 1 0.8470 -6.9640 3.6766 42 1 1.7494 -4.4938 5.1334 43 1 0.1180 -3.8610 5.4591 44 1 0.3469 -5.5892 5.0997 45 1 -0.9799 -4.3638 1.9686 46 1 -1.2432 -5.4538 3.3509 47 1 -3.4758 -4.0071 2.9199 48 1 -6.7115 -3.1886 2.9457 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570709231.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:07 Heat of formation + Delta-G solvation = -55.725360 kcal Electronic energy + Delta-G solvation = -30113.542115 eV Core-core repulsion = 25977.360469 eV Total energy + Delta-G solvation = -4136.181646 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.55949 -39.64370 -38.71641 -37.20207 -34.28408 -33.91995 -33.73463 -32.60660 -31.25159 -30.91919 -28.33706 -28.03725 -26.84644 -26.16807 -24.95461 -23.95342 -22.65102 -20.47823 -19.97359 -19.61317 -18.88424 -17.84632 -17.62879 -16.65293 -16.49789 -15.88102 -15.84200 -15.29898 -14.80574 -14.73870 -14.54165 -14.13791 -14.06995 -13.73169 -13.53143 -13.44126 -13.31761 -13.29067 -12.93830 -12.78740 -12.67960 -12.63739 -12.32191 -12.25667 -12.06794 -11.82663 -11.48812 -11.32516 -11.25622 -11.16704 -10.89918 -10.79007 -10.35274 -10.23009 -10.01305 -9.49193 -9.38861 -8.93834 -8.50332 -8.48032 -7.99041 -7.87371 -6.42142 -3.82879 1.57775 2.24646 2.63409 2.79812 3.15329 3.26076 3.32602 3.39204 3.89688 3.97340 4.23076 4.41027 4.68345 4.79140 4.93154 4.96145 5.07267 5.09115 5.20328 5.21816 5.26087 5.27576 5.44699 5.46180 5.48254 5.55761 5.61317 5.75032 5.78067 5.78606 5.86423 5.92879 5.95370 5.98900 6.01369 6.11613 6.13264 6.27185 6.46841 6.49314 6.55968 7.03076 7.20618 7.31568 7.54772 7.67520 8.05968 8.32861 8.61256 9.17854 9.54279 10.05863 10.75653 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.009856 B = 0.003542 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2840.148660 B = 7904.352528 C = 9714.756165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.137 4.137 3 C -0.046 4.046 4 O -0.175 6.175 5 C 0.036 3.964 6 C -0.078 4.078 7 C -0.224 4.224 8 C 0.592 3.408 9 O -0.543 6.543 10 N -0.703 5.703 11 C 0.128 3.872 12 C 0.065 3.935 13 H 0.088 0.912 14 C -0.185 4.185 15 N -0.511 5.511 16 C 0.022 3.978 17 C 0.041 3.959 18 C 0.445 3.555 19 O -0.578 6.578 20 N -0.564 5.564 21 C -0.297 4.297 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.901 5.901 25 Si 0.928 3.072 26 H -0.268 1.268 27 H -0.281 1.281 28 H -0.282 1.282 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.207 0.793 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.413 0.587 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.058 0.942 43 H 0.097 0.903 44 H 0.018 0.982 45 H 0.087 0.913 46 H 0.051 0.949 47 H 0.391 0.609 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.794 -0.878 -4.743 18.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.139 4.139 3 C -0.111 4.111 4 O -0.071 6.071 5 C -0.016 4.016 6 C -0.134 4.134 7 C -0.228 4.228 8 C 0.377 3.623 9 O -0.421 6.421 10 N -0.354 5.354 11 C 0.004 3.996 12 C -0.045 4.045 13 H 0.106 0.894 14 C -0.244 4.244 15 N -0.235 5.235 16 C -0.126 4.126 17 C -0.090 4.090 18 C 0.230 3.770 19 O -0.462 6.462 20 N -0.201 5.201 21 C -0.427 4.427 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.543 5.543 25 Si 0.755 3.245 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.208 1.208 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.223 0.777 33 H 0.100 0.900 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.250 0.750 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.076 0.924 43 H 0.116 0.884 44 H 0.036 0.964 45 H 0.105 0.895 46 H 0.069 0.931 47 H 0.224 0.776 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 18.190 -0.106 -5.107 18.894 hybrid contribution -1.423 -0.480 0.515 1.588 sum 16.767 -0.586 -4.592 17.394 Atomic orbital electron populations 1.20228 0.88214 1.03726 1.02383 1.21413 0.97039 0.90396 1.05049 1.23607 0.79470 0.99575 1.08489 1.83695 1.29712 1.21773 1.71963 1.22430 0.95881 0.80955 1.02338 1.20403 0.91123 0.97766 1.04126 1.21011 0.93200 0.94105 1.14531 1.17281 0.76599 0.84650 0.83750 1.90783 1.51565 1.67834 1.31911 1.45834 1.68682 1.12103 1.08806 1.21433 1.00805 0.81531 0.95855 1.22047 0.98056 0.91056 0.93318 0.89353 1.22403 1.02426 0.96985 1.02614 1.61794 1.04971 1.52360 1.04358 1.22550 1.01694 0.99933 0.88422 1.21939 0.88446 0.97776 1.00814 1.19722 0.82864 0.87955 0.86429 1.90475 1.71714 1.43044 1.40989 1.41870 1.05495 1.30012 1.42711 1.19725 0.89076 1.09180 1.24720 0.87899 1.25252 0.97171 0.98266 0.97236 1.69623 1.12041 1.35857 1.36731 0.85827 0.79507 0.80271 0.78909 1.19237 1.20752 1.20802 0.91137 0.90916 0.90833 0.77664 0.90039 0.89319 0.89270 0.75038 0.91463 0.90963 0.91626 0.91878 0.91871 0.92366 0.88414 0.96383 0.89513 0.93095 0.77575 0.91940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.23 10.38 36.01 0.37 -0.86 16 2 C -0.14 -1.91 6.38 -102.50 -0.65 -2.57 16 3 C -0.05 -0.53 11.96 29.30 0.35 -0.18 16 4 O -0.17 -2.14 10.52 7.66 0.08 -2.06 16 5 C 0.04 0.44 7.37 -34.97 -0.26 0.18 16 6 C -0.08 -0.66 10.17 36.00 0.37 -0.29 16 7 C -0.22 -3.24 6.07 -103.28 -0.63 -3.87 16 8 C 0.59 9.20 7.41 -12.54 -0.09 9.11 16 9 O -0.54 -10.11 17.11 5.26 0.09 -10.02 16 10 N -0.70 -9.57 5.41 -61.39 -0.33 -9.91 16 11 C 0.13 1.59 4.94 -4.04 -0.02 1.57 16 12 C 0.06 0.73 2.47 -67.71 -0.17 0.56 16 13 H 0.09 0.88 7.93 -51.93 -0.41 0.47 16 14 C -0.19 -1.86 8.41 37.16 0.31 -1.55 16 15 N -0.51 -7.56 3.82 -236.32 -0.90 -8.47 16 16 C 0.02 0.32 8.90 60.07 0.53 0.85 16 17 C 0.04 0.71 4.31 -4.98 -0.02 0.68 16 18 C 0.44 10.10 7.52 -10.98 -0.08 10.02 16 19 O -0.58 -14.80 13.88 5.55 0.08 -14.72 16 20 N -0.56 -14.02 5.29 -10.96 -0.06 -14.08 16 21 C -0.30 -8.14 9.68 -14.93 -0.14 -8.29 16 22 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -24.38 13.05 55.50 0.72 -23.65 16 25 Si 0.93 20.86 29.55 -169.99 -5.02 15.83 16 26 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 27 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 28 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.21 1.61 8.06 -52.49 -0.42 1.19 16 33 H 0.08 0.53 8.14 -51.92 -0.42 0.11 16 34 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.41 5.62 8.06 -40.82 -0.33 5.29 16 37 H 0.07 0.94 6.65 -51.93 -0.35 0.59 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.06 0.71 6.54 -51.93 -0.34 0.37 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.64 6.92 -51.93 -0.36 0.28 16 42 H 0.06 0.72 7.98 -51.93 -0.41 0.30 16 43 H 0.10 1.80 5.92 -51.93 -0.31 1.49 16 44 H 0.02 0.24 6.96 -51.93 -0.36 -0.12 16 45 H 0.09 1.44 6.30 -51.93 -0.33 1.11 16 46 H 0.05 0.81 6.81 -51.93 -0.35 0.45 16 47 H 0.39 9.43 7.90 -40.82 -0.32 9.11 16 48 H 0.27 6.93 8.31 -40.82 -0.34 6.60 16 LS Contribution 398.09 15.07 6.00 6.00 Total: -1.00 -33.15 398.09 -6.76 -39.91 By element: Atomic # 1 Polarization: 22.48 SS G_CDS: -7.19 Total: 15.29 kcal Atomic # 6 Polarization: 6.10 SS G_CDS: -0.23 Total: 5.87 kcal Atomic # 7 Polarization: -55.54 SS G_CDS: -0.57 Total: -56.11 kcal Atomic # 8 Polarization: -27.04 SS G_CDS: 0.25 Total: -26.80 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.15 -6.76 -39.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570709231.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.816 kcal (2) G-P(sol) polarization free energy of solvation -33.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds