Wall clock time and date at job start Tue Mar 31 2020 20:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34170 * 127.01903 * 2 1 4 4 O 1.34214 * 109.12211 * 180.02562 * 3 2 1 5 5 C 1.33649 * 110.91125 * 0.02562 * 4 3 2 6 6 C 1.50696 * 125.80587 * 180.02562 * 5 4 3 7 7 C 1.36417 * 108.39422 * 359.71372 * 5 4 3 8 8 C 1.47378 * 127.19419 * 180.30785 * 7 5 4 9 9 O 1.21619 * 119.99682 * 270.14644 * 8 7 5 10 10 N 1.34773 * 120.00229 * 90.14599 * 8 7 5 11 11 C 1.46507 * 119.99951 * 180.02562 * 10 8 7 12 12 C 1.53003 * 109.47016 * 175.18933 * 11 10 8 13 13 H 1.09007 * 109.46941 * 295.31473 * 12 11 10 14 14 C 1.52998 * 109.46894 * 175.31863 * 12 11 10 15 15 N 1.46900 * 109.46919 * 55.31365 * 12 11 10 16 16 C 1.46906 * 110.99556 * 192.49157 * 15 12 11 17 17 C 1.46895 * 110.99789 * 68.54587 * 15 12 11 18 18 C 1.50701 * 109.47122 * 189.99497 * 17 15 12 19 19 O 1.21294 * 119.99940 * 359.97438 * 18 17 15 20 20 N 1.34781 * 120.00183 * 179.97438 * 18 17 15 21 21 C 1.37095 * 119.99860 * 179.97438 * 20 18 17 22 22 H 1.08000 * 120.00436 * 0.02562 * 21 20 18 23 23 C 1.38953 * 119.99900 * 179.97438 * 21 20 18 24 24 N 1.31415 * 119.99659 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00127 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47146 * 0.02562 * 25 23 21 27 27 H 1.48494 * 109.47303 * 120.00424 * 25 23 21 28 28 H 1.48499 * 109.46829 * 240.00515 * 25 23 21 29 29 H 1.08997 * 109.47025 * 90.02742 * 1 2 3 30 30 H 1.09000 * 109.47366 * 330.02122 * 1 2 3 31 31 H 1.09004 * 109.47120 * 210.02200 * 1 2 3 32 32 H 1.08002 * 125.44134 * 0.02562 * 3 2 1 33 33 H 1.09010 * 109.46923 * 359.97438 * 6 5 4 34 34 H 1.09004 * 109.47072 * 119.97187 * 6 5 4 35 35 H 1.09000 * 109.47499 * 239.97471 * 6 5 4 36 36 H 0.96998 * 120.00044 * 0.02562 * 10 8 7 37 37 H 1.08997 * 109.46950 * 295.19086 * 11 10 8 38 38 H 1.08994 * 109.47117 * 55.19028 * 11 10 8 39 39 H 1.09000 * 109.46780 * 299.99840 * 14 12 11 40 40 H 1.08996 * 109.47130 * 60.00125 * 14 12 11 41 41 H 1.09001 * 109.47026 * 180.02562 * 14 12 11 42 42 H 1.09000 * 109.47075 * 53.76885 * 16 15 12 43 43 H 1.09004 * 109.46828 * 173.75998 * 16 15 12 44 44 H 1.08994 * 109.47236 * 293.76586 * 16 15 12 45 45 H 1.09004 * 109.47135 * 309.99453 * 17 15 12 46 46 H 1.08999 * 109.47844 * 69.99508 * 17 15 12 47 47 H 0.96997 * 119.99882 * 0.02562 * 20 18 17 48 48 H 0.97001 * 119.99599 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3149 1.0713 0.0000 4 8 3.5921 0.6588 -0.0006 5 6 3.6623 -0.6758 -0.0015 6 6 4.9292 -1.4920 -0.0018 7 6 2.3923 -1.1738 0.0049 8 6 1.9914 -2.5920 0.0127 9 8 1.8252 -3.1826 -1.0374 10 7 1.8090 -3.2343 1.1834 11 6 1.4111 -4.6443 1.1910 12 6 1.3898 -5.1603 2.6312 13 1 2.4001 -5.1386 3.0399 14 6 0.8626 -6.5965 2.6506 15 7 0.5140 -4.3062 3.4445 16 6 0.6937 -4.5803 4.8766 17 6 -0.8918 -4.4668 3.0502 18 6 -1.7268 -3.4092 3.7251 19 8 -1.2024 -2.6015 4.4625 20 7 -3.0564 -3.3609 3.5093 21 6 -3.8160 -2.3992 4.1237 22 1 -3.3491 -1.6799 4.7803 23 6 -5.1866 -2.3490 3.9009 24 7 -5.7547 -3.2238 3.1015 25 14 -6.2216 -1.0382 4.7374 26 1 -5.3490 -0.1815 5.5799 27 1 -6.8891 -0.2024 3.7074 28 1 -7.2493 -1.6882 5.5897 29 1 -0.3633 -0.0005 -1.0276 30 1 -0.3634 0.8902 0.5135 31 1 -0.3633 -0.8898 0.5142 32 1 1.9894 2.1011 0.0004 33 1 5.7912 -0.8248 -0.0016 34 1 4.9563 -2.1210 0.8880 35 1 4.9564 -2.1204 -0.8920 36 1 1.9413 -2.7631 2.0208 37 1 0.4172 -4.7436 0.7547 38 1 2.1240 -5.2262 0.6071 39 1 -0.1476 -6.6182 2.2418 40 1 1.5125 -7.2302 2.0471 41 1 0.8470 -6.9640 3.6766 42 1 1.7494 -4.4938 5.1334 43 1 0.1180 -3.8610 5.4591 44 1 0.3469 -5.5892 5.0997 45 1 -0.9799 -4.3638 1.9686 46 1 -1.2432 -5.4538 3.3509 47 1 -3.4758 -4.0071 2.9199 48 1 -6.7115 -3.1886 2.9457 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570709231.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:06 Heat of formation + Delta-G solvation = -80.128307 kcal Electronic energy + Delta-G solvation = -30114.600306 eV Core-core repulsion = 25977.360469 eV Total energy + Delta-G solvation = -4137.239837 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.52072 -40.90037 -40.20513 -38.68130 -35.97657 -35.30233 -34.88054 -33.47601 -33.25713 -31.98999 -29.58473 -29.23462 -27.83924 -27.11005 -26.67893 -25.28514 -23.71986 -21.85093 -21.06441 -20.68990 -20.39367 -19.71010 -18.68379 -18.14197 -17.55122 -16.95986 -16.92571 -16.75420 -16.48895 -16.01083 -15.95136 -15.52622 -15.47018 -15.04209 -14.89431 -14.48736 -14.35182 -14.20423 -13.98217 -13.90484 -13.81004 -13.64246 -13.57176 -13.46759 -13.29027 -13.07209 -13.01677 -12.84043 -12.46125 -12.38597 -12.31030 -12.16509 -12.11650 -11.79381 -11.44133 -11.23649 -10.44960 -10.26306 -10.08024 -9.98254 -9.43902 -9.17845 -8.45246 -5.93451 0.63670 1.23010 1.36320 1.41374 1.44757 1.55326 1.90244 2.07535 2.27102 2.34254 2.80078 3.21852 3.40438 3.54174 3.75706 3.76655 3.99303 4.04942 4.20074 4.22145 4.29549 4.36230 4.36833 4.50752 4.57467 4.59490 4.62531 4.65477 4.66935 4.68125 4.74209 4.79681 4.90035 4.93168 4.99194 5.01421 5.23263 5.24808 5.28609 5.41337 5.42080 5.43726 5.88784 6.07042 6.07863 6.21533 6.52207 6.61979 7.14966 7.16447 7.58526 8.14101 8.72570 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.009856 B = 0.003542 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2840.148660 B = 7904.352528 C = 9714.756165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.173 4.173 3 C -0.029 4.029 4 O -0.175 6.175 5 C 0.045 3.955 6 C -0.078 4.078 7 C -0.261 4.261 8 C 0.593 3.407 9 O -0.582 6.582 10 N -0.695 5.695 11 C 0.127 3.873 12 C 0.074 3.926 13 H 0.113 0.887 14 C -0.181 4.181 15 N -0.524 5.524 16 C 0.027 3.973 17 C 0.058 3.942 18 C 0.444 3.556 19 O -0.608 6.608 20 N -0.577 5.577 21 C -0.327 4.327 22 H 0.080 0.920 23 C -0.014 4.014 24 N -0.923 5.923 25 Si 0.991 3.009 26 H -0.272 1.272 27 H -0.273 1.273 28 H -0.272 1.272 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.039 0.961 32 H 0.243 0.757 33 H 0.104 0.896 34 H 0.102 0.898 35 H 0.091 0.909 36 H 0.414 0.586 37 H 0.049 0.951 38 H 0.088 0.912 39 H 0.054 0.946 40 H 0.085 0.915 41 H 0.067 0.933 42 H 0.085 0.915 43 H 0.055 0.945 44 H 0.031 0.969 45 H 0.092 0.908 46 H 0.069 0.931 47 H 0.393 0.607 48 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.462 -0.973 -4.564 20.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.175 4.175 3 C -0.095 4.095 4 O -0.071 6.071 5 C -0.007 4.007 6 C -0.134 4.134 7 C -0.265 4.265 8 C 0.380 3.620 9 O -0.463 6.463 10 N -0.344 5.344 11 C 0.003 3.997 12 C -0.034 4.034 13 H 0.131 0.869 14 C -0.240 4.240 15 N -0.248 5.248 16 C -0.120 4.120 17 C -0.073 4.073 18 C 0.231 3.769 19 O -0.494 6.494 20 N -0.215 5.215 21 C -0.457 4.457 22 H 0.098 0.902 23 C -0.214 4.214 24 N -0.564 5.564 25 Si 0.814 3.186 26 H -0.196 1.196 27 H -0.198 1.198 28 H -0.197 1.197 29 H 0.091 0.909 30 H 0.105 0.895 31 H 0.058 0.942 32 H 0.259 0.741 33 H 0.123 0.877 34 H 0.120 0.880 35 H 0.109 0.891 36 H 0.250 0.750 37 H 0.067 0.933 38 H 0.106 0.894 39 H 0.073 0.927 40 H 0.104 0.896 41 H 0.086 0.914 42 H 0.104 0.896 43 H 0.074 0.926 44 H 0.049 0.951 45 H 0.110 0.890 46 H 0.087 0.913 47 H 0.226 0.774 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 19.874 -0.225 -4.914 20.474 hybrid contribution -1.849 -0.450 0.465 1.959 sum 18.025 -0.676 -4.449 18.578 Atomic orbital electron populations 1.20129 0.88896 1.02690 1.02235 1.21561 0.97039 0.91361 1.07499 1.24232 0.78784 1.00514 1.05939 1.83735 1.29914 1.21787 1.71641 1.23040 0.96425 0.81054 1.00225 1.20591 0.90135 0.97903 1.04784 1.21133 0.94583 0.93721 1.17104 1.17473 0.75934 0.85096 0.83523 1.90747 1.53568 1.68827 1.33147 1.45845 1.67681 1.12603 1.08314 1.21545 1.00239 0.81086 0.96857 1.22090 0.98369 0.91162 0.91813 0.86862 1.22370 1.02250 0.96089 1.03331 1.61711 1.03813 1.54257 1.05047 1.22430 1.02737 0.99253 0.87621 1.21720 0.89215 0.96180 1.00232 1.20729 0.82517 0.88279 0.85353 1.90456 1.72229 1.44541 1.42150 1.41957 1.06335 1.30001 1.43187 1.19674 0.90083 1.10126 1.25780 0.90187 1.26015 0.97683 1.00102 0.97562 1.69690 1.12558 1.36882 1.37310 0.84902 0.77800 0.77782 0.78070 1.19604 1.19813 1.19708 0.90924 0.89546 0.94151 0.74053 0.87722 0.87992 0.89087 0.74961 0.93283 0.89373 0.92672 0.89615 0.91362 0.89598 0.92630 0.95074 0.89031 0.91313 0.77394 0.91459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.38 10.38 71.24 0.74 -1.64 16 2 C -0.17 -4.83 6.38 -18.49 -0.12 -4.95 16 3 C -0.03 -0.64 11.96 66.89 0.80 0.17 16 4 O -0.17 -3.95 10.52 4.51 0.05 -3.90 16 5 C 0.04 1.04 7.37 25.26 0.19 1.22 16 6 C -0.08 -1.16 10.17 71.23 0.72 -0.43 16 7 C -0.26 -7.57 6.07 -18.99 -0.12 -7.68 16 8 C 0.59 18.69 7.41 86.65 0.64 19.33 16 9 O -0.58 -22.14 17.11 -4.09 -0.07 -22.21 16 10 N -0.69 -18.74 5.41 -466.40 -2.52 -21.26 16 11 C 0.13 3.00 4.94 86.38 0.43 3.43 16 12 C 0.07 1.51 2.47 44.92 0.11 1.62 16 13 H 0.11 1.84 7.93 -2.38 -0.02 1.82 16 14 C -0.18 -3.14 8.41 71.98 0.61 -2.53 16 15 N -0.52 -14.97 3.82 -901.59 -3.45 -18.41 16 16 C 0.03 0.76 8.90 127.69 1.14 1.90 16 17 C 0.06 1.96 4.31 85.56 0.37 2.33 16 18 C 0.44 20.75 7.52 87.66 0.66 21.41 16 19 O -0.61 -32.25 13.88 -3.07 -0.04 -32.30 16 20 N -0.58 -29.66 5.29 -306.98 -1.62 -31.29 16 21 C -0.33 -18.50 9.68 84.04 0.81 -17.68 16 22 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 23 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 24 N -0.92 -50.32 13.05 21.66 0.28 -50.04 16 25 Si 0.99 43.05 29.55 68.60 2.03 45.07 16 26 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 27 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 28 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 29 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 32 H 0.24 3.13 8.06 -2.91 -0.02 3.10 16 33 H 0.10 1.06 8.14 -2.38 -0.02 1.04 16 34 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.41 11.11 8.06 -92.71 -0.75 10.36 16 37 H 0.05 1.36 6.65 -2.39 -0.02 1.34 16 38 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.05 1.08 6.54 -2.39 -0.02 1.07 16 40 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.07 1.15 6.92 -2.39 -0.02 1.13 16 42 H 0.09 1.90 7.98 -2.39 -0.02 1.88 16 43 H 0.05 2.06 5.92 -2.38 -0.01 2.05 16 44 H 0.03 0.78 6.96 -2.39 -0.02 0.76 16 45 H 0.09 3.06 6.30 -2.38 -0.02 3.04 16 46 H 0.07 2.12 6.81 -2.39 -0.02 2.10 16 47 H 0.39 19.54 7.90 -92.71 -0.73 18.81 16 48 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 Total: -1.00 -74.62 398.09 1.62 -73.00 By element: Atomic # 1 Polarization: 45.63 SS G_CDS: -0.48 Total: 45.15 kcal Atomic # 6 Polarization: 8.74 SS G_CDS: 7.45 Total: 16.18 kcal Atomic # 7 Polarization: -113.69 SS G_CDS: -7.31 Total: -121.00 kcal Atomic # 8 Polarization: -58.34 SS G_CDS: -0.07 Total: -58.40 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.07 kcal Total: -74.62 1.62 -73.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570709231.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.133 kcal (2) G-P(sol) polarization free energy of solvation -74.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds