Wall clock time and date at job start Tue Mar 31 2020 20:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 110.53461 * 2 1 4 4 C 1.53346 * 109.40818 * 65.82096 * 3 2 1 5 5 C 1.53195 * 109.14901 * 178.68126 * 4 3 2 6 6 N 1.46919 * 108.89273 * 54.57640 * 5 4 3 7 7 C 1.34778 * 120.63255 * 126.34238 * 6 5 4 8 8 O 1.21279 * 120.00169 * 359.97438 * 7 6 5 9 9 C 1.50698 * 120.00023 * 179.97438 * 7 6 5 10 10 C 1.53003 * 109.46931 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.47098 * 180.02562 * 10 9 7 12 12 C 1.50702 * 109.47531 * 179.97438 * 11 10 9 13 13 H 1.08002 * 119.99422 * 0.02562 * 12 11 10 14 14 C 1.37871 * 120.00430 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00077 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00097 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47565 * 89.99947 * 16 14 12 18 18 H 1.48500 * 109.47122 * 210.00207 * 16 14 12 19 19 H 1.48505 * 109.46853 * 329.99527 * 16 14 12 20 20 C 1.46933 * 118.74003 * 306.32349 * 6 5 4 21 21 C 1.53034 * 109.45866 * 305.69719 * 3 2 1 22 22 N 1.47313 * 110.60271 * 237.16868 * 2 1 3 23 23 C 1.34860 * 106.43904 * 241.27529 * 22 2 1 24 24 O 1.21545 * 123.73175 * 180.02562 * 23 22 2 25 25 N 1.33794 * 112.50417 * 0.12936 * 23 22 2 26 26 C 1.34766 * 111.64123 * 359.91762 * 25 23 22 27 27 O 1.21241 * 127.15973 * 180.02562 * 26 25 23 28 28 H 1.09007 * 109.46635 * 60.00325 * 1 2 3 29 29 H 1.08999 * 109.47319 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47172 * 300.00605 * 1 2 3 31 31 H 1.09000 * 109.45592 * 185.72591 * 3 2 1 32 32 H 1.08997 * 109.68637 * 58.71335 * 4 3 2 33 33 H 1.09002 * 109.47277 * 298.51591 * 4 3 2 34 34 H 1.09002 * 109.58720 * 294.71670 * 5 4 3 35 35 H 1.08996 * 109.58651 * 174.43567 * 5 4 3 36 36 H 1.09001 * 109.47488 * 299.99559 * 9 7 6 37 37 H 1.09001 * 109.47269 * 59.99982 * 9 7 6 38 38 H 1.08996 * 109.47074 * 299.99864 * 10 9 7 39 39 H 1.09001 * 109.47188 * 59.99897 * 10 9 7 40 40 H 1.09005 * 109.47553 * 300.00005 * 11 10 9 41 41 H 1.09001 * 109.47240 * 59.99862 * 11 10 9 42 42 H 0.97001 * 120.00173 * 180.02562 * 15 14 12 43 43 H 1.08994 * 109.58580 * 173.39910 * 20 6 5 44 44 H 1.09006 * 109.57831 * 293.67403 * 20 6 5 45 45 H 1.08994 * 109.50232 * 61.42256 * 21 3 2 46 46 H 1.09007 * 109.52628 * 301.33917 * 21 3 2 47 47 H 0.97000 * 126.69142 * 61.27068 * 22 2 1 48 48 H 0.96996 * 124.18561 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0666 1.4328 0.0000 4 6 1.6906 2.1178 1.3194 5 6 2.2589 3.5404 1.3269 6 7 1.7928 4.2452 0.1250 7 6 1.1667 5.4344 0.2257 8 8 0.9828 5.9326 1.3160 9 6 0.6950 6.1452 -1.0166 10 6 0.0228 7.4630 -0.6260 11 6 -0.4567 8.1844 -1.8872 12 6 -1.1194 9.4821 -1.5026 13 1 -1.1910 9.7642 -0.4625 14 6 -1.6333 10.3095 -2.4783 15 7 -1.5457 9.9661 -3.7448 16 14 -2.4541 11.9184 -2.0015 17 1 -1.4386 13.0013 -1.9678 18 1 -3.5024 12.2537 -2.9983 19 1 -3.0739 11.7790 -0.6592 20 6 2.0226 3.6291 -1.1890 21 6 1.4570 2.2056 -1.1718 22 7 2.0483 -0.7476 -1.1587 23 6 2.7645 -1.7758 -0.6600 24 8 3.3358 -2.5976 -1.3497 25 7 2.7744 -1.7919 0.6778 26 6 2.0632 -0.7692 1.1923 27 8 1.8871 -0.5167 2.3650 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 3.1517 1.4141 -0.1025 32 1 2.1056 1.5559 2.1561 33 1 0.6052 2.1592 1.4110 34 1 3.3482 3.4988 1.3268 35 1 1.9135 4.0672 2.2164 36 1 1.5478 6.3507 -1.6637 37 1 -0.0197 5.5154 -1.5464 38 1 -0.8299 7.2580 0.0212 39 1 0.7378 8.0926 -0.0965 40 1 0.3957 8.3894 -2.5350 41 1 -1.1718 7.5545 -2.4164 42 1 -1.9069 10.5484 -4.4314 43 1 1.5193 4.2131 -1.9594 44 1 3.0925 3.5971 -1.3954 45 1 0.3739 2.2459 -1.0569 46 1 1.7052 1.7042 -2.1074 47 1 1.9023 -0.5399 -2.0949 48 1 3.2369 -2.4568 1.2114 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001586898892.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:14 Heat of formation + Delta-G solvation = -99.504643 kcal Electronic energy + Delta-G solvation = -29665.728994 eV Core-core repulsion = 25527.648936 eV Total energy + Delta-G solvation = -4138.080058 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.12418 -40.23665 -39.21140 -38.09109 -36.62813 -35.04056 -34.26806 -32.93779 -32.13667 -31.33344 -30.34569 -27.98276 -26.40433 -24.91026 -24.22356 -23.51907 -22.74366 -21.89832 -20.65967 -19.95403 -18.85737 -18.70988 -17.36736 -17.21160 -16.75460 -16.43088 -16.24757 -16.11746 -15.70176 -15.61711 -15.42755 -14.86152 -14.50501 -14.34708 -14.11869 -14.05406 -13.48446 -13.36123 -13.14259 -12.84090 -12.62507 -12.56288 -12.26851 -11.89130 -11.81274 -11.64321 -11.44384 -11.35370 -11.27080 -10.94969 -10.88568 -10.81876 -10.59151 -10.54007 -10.42058 -10.02035 -9.69049 -9.65356 -9.27341 -9.02833 -8.71155 -8.33154 -5.98995 -4.00218 1.04157 1.88146 2.47516 2.54409 2.85317 2.98281 3.34003 3.35155 3.39913 3.44724 3.81907 3.99643 4.34631 4.37000 4.48278 4.68186 4.70144 4.76685 4.89225 4.91719 5.02690 5.11744 5.14260 5.27435 5.34107 5.37254 5.40484 5.45514 5.49326 5.55694 5.65426 5.67667 5.68295 5.76829 5.93240 6.21086 6.21604 6.37143 6.47445 6.70722 6.84900 6.91578 7.14416 7.41730 7.60749 7.69423 7.81925 8.01674 8.37768 8.45902 9.06837 9.63849 11.12471 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.025406 B = 0.002024 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.841184 B =13827.630619 C =14359.106439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.124 3.876 3 C -0.079 4.079 4 C -0.138 4.138 5 C 0.113 3.887 6 N -0.622 5.622 7 C 0.516 3.484 8 O -0.535 6.535 9 C -0.137 4.137 10 C -0.095 4.095 11 C 0.021 3.979 12 C -0.517 4.517 13 H 0.056 0.944 14 C 0.055 3.945 15 N -0.898 5.898 16 Si 0.892 3.108 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.273 1.273 20 C 0.108 3.892 21 C -0.131 4.131 22 N -0.717 5.717 23 C 0.705 3.295 24 O -0.544 6.544 25 N -0.681 5.681 26 C 0.533 3.467 27 O -0.455 6.455 28 H 0.086 0.914 29 H 0.067 0.933 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.077 0.923 34 H 0.062 0.938 35 H 0.096 0.904 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.054 0.946 39 H 0.054 0.946 40 H 0.015 0.985 41 H 0.015 0.985 42 H 0.260 0.740 43 H 0.097 0.903 44 H 0.068 0.932 45 H 0.081 0.919 46 H 0.077 0.923 47 H 0.441 0.559 48 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.926 -26.287 5.301 28.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.034 3.966 3 C -0.099 4.099 4 C -0.176 4.176 5 C -0.010 4.010 6 N -0.358 5.358 7 C 0.306 3.694 8 O -0.411 6.411 9 C -0.177 4.177 10 C -0.134 4.134 11 C -0.016 4.016 12 C -0.556 4.556 13 H 0.074 0.926 14 C -0.145 4.145 15 N -0.538 5.538 16 Si 0.720 3.280 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.198 1.198 20 C -0.015 4.015 21 C -0.169 4.169 22 N -0.382 5.382 23 C 0.404 3.596 24 O -0.417 6.417 25 N -0.352 5.352 26 C 0.318 3.682 27 O -0.323 6.323 28 H 0.105 0.895 29 H 0.086 0.914 30 H 0.107 0.893 31 H 0.103 0.897 32 H 0.109 0.891 33 H 0.096 0.904 34 H 0.081 0.919 35 H 0.114 0.886 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.034 0.966 41 H 0.034 0.966 42 H 0.069 0.931 43 H 0.115 0.885 44 H 0.087 0.913 45 H 0.099 0.901 46 H 0.096 0.904 47 H 0.287 0.713 48 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges 8.932 -26.179 5.967 28.297 hybrid contribution -0.187 0.477 -0.150 0.534 sum 8.744 -25.702 5.817 27.765 Atomic orbital electron populations 1.22117 0.89828 1.03796 1.05272 1.21540 0.97571 0.93650 0.83881 1.21418 1.01021 0.89861 0.97617 1.22245 1.02880 0.96009 0.96480 1.21480 0.98323 0.91568 0.89621 1.48242 1.59699 1.21016 1.06858 1.21281 0.76110 0.79861 0.92178 1.90672 1.55601 1.65324 1.29520 1.21868 1.01811 0.99286 0.94727 1.21459 0.99162 0.92256 1.00481 1.19127 0.96079 0.94777 0.91631 1.21270 1.36860 1.04325 0.93109 0.92587 1.25017 0.96266 0.98243 0.95000 1.69958 1.46688 1.37605 0.99514 0.86596 0.79224 0.83931 0.78290 1.20682 1.21271 1.19835 1.21694 1.01086 0.93214 0.85505 1.22049 1.01852 0.95604 0.97408 1.45761 1.54501 1.28644 1.09281 1.15937 0.79686 0.82302 0.81664 1.91076 1.48408 1.41397 1.60859 1.44356 1.51277 1.30801 1.08737 1.20752 0.77146 0.80383 0.89951 1.90838 1.56458 1.68375 1.16662 0.89510 0.91389 0.89328 0.89729 0.89064 0.90437 0.91939 0.88589 0.89437 0.89418 0.92709 0.92719 0.96649 0.96641 0.93078 0.88521 0.91339 0.90058 0.90426 0.71346 0.72533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.66 8.23 37.16 0.31 -0.36 16 2 C 0.12 0.62 0.74 -132.09 -0.10 0.52 16 3 C -0.08 -0.43 1.76 -90.42 -0.16 -0.59 16 4 C -0.14 -1.03 4.74 -26.45 -0.13 -1.15 16 5 C 0.11 1.10 6.42 -3.71 -0.02 1.07 16 6 N -0.62 -6.80 2.97 -172.77 -0.51 -7.32 16 7 C 0.52 7.91 7.70 -10.99 -0.08 7.82 16 8 O -0.54 -10.39 15.39 5.56 0.09 -10.31 16 9 C -0.14 -2.15 4.05 -27.88 -0.11 -2.26 16 10 C -0.10 -2.01 4.44 -26.73 -0.12 -2.13 16 11 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 12 C -0.52 -14.79 9.11 -34.44 -0.31 -15.10 16 13 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 14 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 15 N -0.90 -26.74 13.29 55.43 0.74 -26.00 16 16 Si 0.89 21.83 29.54 -169.99 -5.02 16.80 16 17 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 20 C 0.11 0.80 6.34 -3.71 -0.02 0.78 16 21 C -0.13 -0.66 4.76 -26.62 -0.13 -0.78 16 22 N -0.72 -3.30 5.69 -52.84 -0.30 -3.61 16 23 C 0.70 5.08 9.00 -87.72 -0.79 4.29 16 24 O -0.54 -5.96 18.04 5.33 0.10 -5.86 16 25 N -0.68 -3.93 5.70 -15.71 -0.09 -4.01 16 26 C 0.53 3.52 7.16 -10.55 -0.08 3.45 16 27 O -0.46 -4.12 15.76 5.59 0.09 -4.03 16 28 H 0.09 0.29 6.48 -51.92 -0.34 -0.05 16 29 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.09 0.45 6.73 -51.93 -0.35 0.10 16 31 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.09 0.73 5.78 -51.93 -0.30 0.43 16 33 H 0.08 0.62 6.75 -51.93 -0.35 0.27 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.10 1.15 7.00 -51.93 -0.36 0.79 16 36 H 0.09 1.25 7.94 -51.93 -0.41 0.83 16 37 H 0.09 1.22 7.69 -51.93 -0.40 0.82 16 38 H 0.05 1.20 8.10 -51.93 -0.42 0.78 16 39 H 0.05 1.21 8.10 -51.93 -0.42 0.79 16 40 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 43 H 0.10 0.72 5.93 -51.93 -0.31 0.41 16 44 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.08 0.44 6.51 -51.93 -0.34 0.10 16 46 H 0.08 0.23 7.50 -51.92 -0.39 -0.16 16 47 H 0.44 1.27 8.48 -40.82 -0.35 0.93 16 48 H 0.43 1.77 8.96 -40.82 -0.37 1.40 16 LS Contribution 379.47 15.07 5.72 5.72 Total: -1.00 -36.33 379.47 -8.36 -44.69 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: -7.18 Total: -3.52 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: -1.98 Total: -2.56 kcal Atomic # 7 Polarization: -40.77 SS G_CDS: -0.17 Total: -40.94 kcal Atomic # 8 Polarization: -20.47 SS G_CDS: 0.27 Total: -20.20 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.33 -8.36 -44.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001586898892.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.814 kcal (2) G-P(sol) polarization free energy of solvation -36.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds