Wall clock time and date at job start Tue Mar 31 2020 20:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 110.53461 * 2 1 4 4 C 1.53346 * 109.40818 * 65.82096 * 3 2 1 5 5 C 1.53195 * 109.14901 * 178.68126 * 4 3 2 6 6 N 1.46919 * 108.89273 * 54.57640 * 5 4 3 7 7 C 1.34778 * 120.63255 * 126.34238 * 6 5 4 8 8 O 1.21279 * 120.00169 * 359.97438 * 7 6 5 9 9 C 1.50698 * 120.00023 * 179.97438 * 7 6 5 10 10 C 1.53003 * 109.46931 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.47098 * 180.02562 * 10 9 7 12 12 C 1.50702 * 109.47531 * 179.97438 * 11 10 9 13 13 H 1.08002 * 119.99422 * 0.02562 * 12 11 10 14 14 C 1.37871 * 120.00430 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00077 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00097 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47565 * 89.99947 * 16 14 12 18 18 H 1.48500 * 109.47122 * 210.00207 * 16 14 12 19 19 H 1.48505 * 109.46853 * 329.99527 * 16 14 12 20 20 C 1.46933 * 118.74003 * 306.32349 * 6 5 4 21 21 C 1.53034 * 109.45866 * 305.69719 * 3 2 1 22 22 N 1.47313 * 110.60271 * 237.16868 * 2 1 3 23 23 C 1.34860 * 106.43904 * 241.27529 * 22 2 1 24 24 O 1.21545 * 123.73175 * 180.02562 * 23 22 2 25 25 N 1.33794 * 112.50417 * 0.12936 * 23 22 2 26 26 C 1.34766 * 111.64123 * 359.91762 * 25 23 22 27 27 O 1.21241 * 127.15973 * 180.02562 * 26 25 23 28 28 H 1.09007 * 109.46635 * 60.00325 * 1 2 3 29 29 H 1.08999 * 109.47319 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47172 * 300.00605 * 1 2 3 31 31 H 1.09000 * 109.45592 * 185.72591 * 3 2 1 32 32 H 1.08997 * 109.68637 * 58.71335 * 4 3 2 33 33 H 1.09002 * 109.47277 * 298.51591 * 4 3 2 34 34 H 1.09002 * 109.58720 * 294.71670 * 5 4 3 35 35 H 1.08996 * 109.58651 * 174.43567 * 5 4 3 36 36 H 1.09001 * 109.47488 * 299.99559 * 9 7 6 37 37 H 1.09001 * 109.47269 * 59.99982 * 9 7 6 38 38 H 1.08996 * 109.47074 * 299.99864 * 10 9 7 39 39 H 1.09001 * 109.47188 * 59.99897 * 10 9 7 40 40 H 1.09005 * 109.47553 * 300.00005 * 11 10 9 41 41 H 1.09001 * 109.47240 * 59.99862 * 11 10 9 42 42 H 0.97001 * 120.00173 * 180.02562 * 15 14 12 43 43 H 1.08994 * 109.58580 * 173.39910 * 20 6 5 44 44 H 1.09006 * 109.57831 * 293.67403 * 20 6 5 45 45 H 1.08994 * 109.50232 * 61.42256 * 21 3 2 46 46 H 1.09007 * 109.52628 * 301.33917 * 21 3 2 47 47 H 0.97000 * 126.69142 * 61.27068 * 22 2 1 48 48 H 0.96996 * 124.18561 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0666 1.4328 0.0000 4 6 1.6906 2.1178 1.3194 5 6 2.2589 3.5404 1.3269 6 7 1.7928 4.2452 0.1250 7 6 1.1667 5.4344 0.2257 8 8 0.9828 5.9326 1.3160 9 6 0.6950 6.1452 -1.0166 10 6 0.0228 7.4630 -0.6260 11 6 -0.4567 8.1844 -1.8872 12 6 -1.1194 9.4821 -1.5026 13 1 -1.1910 9.7642 -0.4625 14 6 -1.6333 10.3095 -2.4783 15 7 -1.5457 9.9661 -3.7448 16 14 -2.4541 11.9184 -2.0015 17 1 -1.4386 13.0013 -1.9678 18 1 -3.5024 12.2537 -2.9983 19 1 -3.0739 11.7790 -0.6592 20 6 2.0226 3.6291 -1.1890 21 6 1.4570 2.2056 -1.1718 22 7 2.0483 -0.7476 -1.1587 23 6 2.7645 -1.7758 -0.6600 24 8 3.3358 -2.5976 -1.3497 25 7 2.7744 -1.7919 0.6778 26 6 2.0632 -0.7692 1.1923 27 8 1.8871 -0.5167 2.3650 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 3.1517 1.4141 -0.1025 32 1 2.1056 1.5559 2.1561 33 1 0.6052 2.1592 1.4110 34 1 3.3482 3.4988 1.3268 35 1 1.9135 4.0672 2.2164 36 1 1.5478 6.3507 -1.6637 37 1 -0.0197 5.5154 -1.5464 38 1 -0.8299 7.2580 0.0212 39 1 0.7378 8.0926 -0.0965 40 1 0.3957 8.3894 -2.5350 41 1 -1.1718 7.5545 -2.4164 42 1 -1.9069 10.5484 -4.4314 43 1 1.5193 4.2131 -1.9594 44 1 3.0925 3.5971 -1.3954 45 1 0.3739 2.2459 -1.0569 46 1 1.7052 1.7042 -2.1074 47 1 1.9023 -0.5399 -2.0949 48 1 3.2369 -2.4568 1.2114 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001586898892.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:13 Heat of formation + Delta-G solvation = -126.788112 kcal Electronic energy + Delta-G solvation = -29666.912093 eV Core-core repulsion = 25527.648936 eV Total energy + Delta-G solvation = -4139.263158 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.64971 -41.19657 -39.88079 -38.88542 -37.34874 -36.12350 -35.70411 -34.12592 -33.45431 -32.12497 -30.93137 -29.59901 -27.12477 -25.95496 -25.28828 -24.39081 -23.45311 -22.66623 -21.99469 -20.90222 -19.75918 -19.29030 -18.49692 -18.08810 -17.70887 -17.50680 -16.95977 -16.84903 -16.79764 -16.54720 -16.41595 -16.03041 -15.55897 -15.31221 -15.05662 -14.65745 -14.51058 -14.33498 -14.08509 -13.79455 -13.72671 -13.58186 -13.20048 -13.12160 -13.04182 -12.60947 -12.54395 -12.45180 -12.33348 -12.23659 -11.98671 -11.86195 -11.53102 -11.52086 -11.47727 -11.41949 -11.22700 -11.01237 -10.61961 -10.52401 -10.51601 -9.61848 -8.18747 -6.27969 0.49084 1.40779 1.41071 1.41296 1.52846 1.67709 1.92454 2.03455 2.09704 2.42896 2.84722 3.14302 3.32168 3.55028 3.66221 3.83272 3.96028 4.11899 4.21741 4.22124 4.28032 4.30075 4.33574 4.50578 4.61632 4.72354 4.74001 4.78914 4.83502 4.86129 4.90710 4.99866 5.02271 5.09073 5.12604 5.13772 5.17288 5.22306 5.40400 5.55872 5.65050 5.78708 5.81057 5.85800 5.89193 6.29447 6.36531 6.42707 6.87283 7.11140 7.24252 7.40452 8.92530 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.025406 B = 0.002024 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.841184 B =13827.630619 C =14359.106439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.134 3.866 3 C -0.073 4.073 4 C -0.128 4.128 5 C 0.111 3.889 6 N -0.610 5.610 7 C 0.514 3.486 8 O -0.588 6.588 9 C -0.127 4.127 10 C -0.083 4.083 11 C 0.028 3.972 12 C -0.547 4.547 13 H 0.049 0.951 14 C 0.004 3.996 15 N -0.927 5.927 16 Si 0.959 3.041 17 H -0.273 1.273 18 H -0.278 1.278 19 H -0.269 1.269 20 C 0.097 3.903 21 C -0.126 4.126 22 N -0.697 5.697 23 C 0.707 3.293 24 O -0.582 6.582 25 N -0.674 5.674 26 C 0.533 3.467 27 O -0.481 6.481 28 H 0.103 0.897 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.107 0.893 37 H 0.111 0.889 38 H 0.038 0.962 39 H 0.036 0.964 40 H 0.001 0.999 41 H 0.004 0.996 42 H 0.264 0.736 43 H 0.101 0.899 44 H 0.087 0.913 45 H 0.082 0.918 46 H 0.109 0.891 47 H 0.452 0.548 48 H 0.439 0.561 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.076 -27.196 4.187 28.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.043 3.957 3 C -0.093 4.093 4 C -0.167 4.167 5 C -0.012 4.012 6 N -0.343 5.343 7 C 0.304 3.696 8 O -0.468 6.468 9 C -0.166 4.166 10 C -0.121 4.121 11 C -0.010 4.010 12 C -0.585 4.585 13 H 0.067 0.933 14 C -0.194 4.194 15 N -0.568 5.568 16 Si 0.784 3.216 17 H -0.198 1.198 18 H -0.203 1.203 19 H -0.194 1.194 20 C -0.024 4.024 21 C -0.164 4.164 22 N -0.363 5.363 23 C 0.406 3.594 24 O -0.458 6.458 25 N -0.344 5.344 26 C 0.319 3.681 27 O -0.351 6.351 28 H 0.122 0.878 29 H 0.089 0.911 30 H 0.099 0.901 31 H 0.111 0.889 32 H 0.105 0.895 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.125 0.875 37 H 0.129 0.871 38 H 0.057 0.943 39 H 0.055 0.945 40 H 0.020 0.980 41 H 0.022 0.978 42 H 0.073 0.927 43 H 0.119 0.881 44 H 0.105 0.895 45 H 0.101 0.899 46 H 0.128 0.872 47 H 0.300 0.700 48 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges 9.096 -27.126 4.820 29.014 hybrid contribution -0.199 0.715 0.201 0.769 sum 8.898 -26.411 5.021 28.319 Atomic orbital electron populations 1.22150 0.88944 1.04214 1.05744 1.21443 0.98027 0.93042 0.83182 1.21355 1.01582 0.89735 0.96599 1.22117 1.02310 0.94480 0.97762 1.21557 0.99212 0.92284 0.88114 1.48233 1.57669 1.19554 1.08885 1.21122 0.76428 0.81001 0.91017 1.90656 1.58124 1.67050 1.31007 1.21688 1.02660 0.96864 0.95425 1.21170 0.98489 0.94576 0.97884 1.19008 0.94966 0.94011 0.92970 1.21691 1.37705 1.06060 0.93022 0.93280 1.25865 0.96752 1.01823 0.94948 1.70053 1.47299 1.38996 1.00414 0.85544 0.78403 0.79510 0.78186 1.19829 1.20279 1.19405 1.22056 1.02633 0.94340 0.83379 1.22065 1.01777 0.94069 0.98497 1.45661 1.53357 1.27523 1.09745 1.15995 0.79450 0.82265 0.81684 1.91061 1.50148 1.42951 1.61673 1.44300 1.50885 1.30770 1.08478 1.20977 0.76757 0.80416 0.89961 1.90837 1.57380 1.69047 1.17845 0.87844 0.91080 0.90082 0.88946 0.89470 0.91027 0.90385 0.91389 0.87530 0.87113 0.94277 0.94476 0.98013 0.97800 0.92676 0.88115 0.89454 0.89909 0.87243 0.70008 0.71802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 8.23 71.98 0.59 -0.35 16 2 C 0.13 0.99 0.74 2.98 0.00 0.99 16 3 C -0.07 -0.58 1.76 -10.67 -0.02 -0.60 16 4 C -0.13 -1.73 4.74 30.78 0.15 -1.59 16 5 C 0.11 2.06 6.42 86.36 0.55 2.61 16 6 N -0.61 -12.38 2.97 -818.91 -2.43 -14.81 16 7 C 0.51 15.56 7.70 87.66 0.67 16.24 16 8 O -0.59 -23.50 15.39 -3.03 -0.05 -23.55 16 9 C -0.13 -3.86 4.05 29.85 0.12 -3.74 16 10 C -0.08 -3.57 4.44 30.60 0.14 -3.43 16 11 C 0.03 1.42 4.97 29.85 0.15 1.57 16 12 C -0.55 -31.76 9.11 25.60 0.23 -31.53 16 13 H 0.05 2.84 7.74 -2.91 -0.02 2.82 16 14 C 0.00 0.24 5.46 84.65 0.46 0.70 16 15 N -0.93 -55.30 13.29 21.45 0.28 -55.01 16 16 Si 0.96 44.73 29.54 68.60 2.03 46.76 16 17 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 18 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 19 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 20 C 0.10 1.12 6.34 86.36 0.55 1.66 16 21 C -0.13 -0.78 4.76 30.67 0.15 -0.64 16 22 N -0.70 -4.37 5.69 -439.33 -2.50 -6.88 16 23 C 0.71 8.84 9.00 179.33 1.61 10.46 16 24 O -0.58 -12.00 18.04 -3.86 -0.07 -12.07 16 25 N -0.67 -6.78 5.70 -440.85 -2.51 -9.30 16 26 C 0.53 6.21 7.16 87.94 0.63 6.84 16 27 O -0.48 -8.30 15.76 -2.91 -0.05 -8.34 16 28 H 0.10 0.32 6.48 -2.38 -0.02 0.31 16 29 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.08 0.69 6.73 -2.39 -0.02 0.67 16 31 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.09 1.31 5.78 -2.39 -0.01 1.30 16 33 H 0.07 1.08 6.75 -2.39 -0.02 1.06 16 34 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.07 1.68 7.00 -2.39 -0.02 1.67 16 36 H 0.11 2.84 7.94 -2.39 -0.02 2.82 16 37 H 0.11 2.85 7.69 -2.39 -0.02 2.83 16 38 H 0.04 1.77 8.10 -2.39 -0.02 1.75 16 39 H 0.04 1.69 8.10 -2.39 -0.02 1.67 16 40 H 0.00 0.08 8.14 -2.38 -0.02 0.06 16 41 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 42 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 43 H 0.10 1.14 5.93 -2.39 -0.01 1.12 16 44 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 45 H 0.08 0.57 6.51 -2.39 -0.02 0.55 16 46 H 0.11 0.08 7.50 -2.38 -0.02 0.06 16 47 H 0.45 0.93 8.48 -92.71 -0.79 0.15 16 48 H 0.44 3.16 8.96 -92.71 -0.83 2.33 16 Total: -1.00 -80.70 379.47 0.08 -80.62 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: -0.61 Total: 3.39 kcal Atomic # 6 Polarization: -6.78 SS G_CDS: 5.99 Total: -0.80 kcal Atomic # 7 Polarization: -78.83 SS G_CDS: -7.17 Total: -86.00 kcal Atomic # 8 Polarization: -43.81 SS G_CDS: -0.16 Total: -43.97 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -80.70 0.08 -80.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001586898892.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.171 kcal (2) G-P(sol) polarization free energy of solvation -80.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds