Wall clock time and date at job start Tue Mar 31 2020 20:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34181 * 127.02059 * 2 1 4 4 O 1.34214 * 109.12131 * 180.02562 * 3 2 1 5 5 C 1.33649 * 110.91059 * 359.97438 * 4 3 2 6 6 C 1.50708 * 125.80370 * 180.02562 * 5 4 3 7 7 C 1.36421 * 108.39581 * 359.71469 * 5 4 3 8 8 C 1.47381 * 127.18938 * 180.30663 * 7 5 4 9 9 O 1.21616 * 119.99873 * 270.14460 * 8 7 5 10 10 N 1.34771 * 120.00204 * 90.15313 * 8 7 5 11 11 C 1.46500 * 120.00275 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.47277 * 179.97438 * 11 10 8 13 13 H 1.09005 * 109.46901 * 55.00049 * 12 11 10 14 14 C 1.52995 * 109.47177 * 294.99921 * 12 11 10 15 15 C 1.52995 * 109.47143 * 174.99663 * 12 11 10 16 16 N 1.46898 * 109.47379 * 185.00297 * 15 12 11 17 17 C 1.46906 * 111.00329 * 180.02562 * 16 15 12 18 18 C 1.50699 * 109.47022 * 179.97438 * 17 16 15 19 19 O 1.21286 * 120.00254 * 359.97438 * 18 17 16 20 20 N 1.34782 * 119.99478 * 179.97438 * 18 17 16 21 21 C 1.37103 * 119.99450 * 180.02562 * 20 18 17 22 22 H 1.07997 * 120.00307 * 359.97438 * 21 20 18 23 23 C 1.38948 * 119.99494 * 180.02562 * 21 20 18 24 24 N 1.31415 * 119.99883 * 179.97438 * 23 21 20 25 25 Si 1.86798 * 120.00174 * 359.97438 * 23 21 20 26 26 H 1.48507 * 109.47118 * 90.00451 * 25 23 21 27 27 H 1.48498 * 109.47220 * 210.00190 * 25 23 21 28 28 H 1.48498 * 109.47497 * 330.00371 * 25 23 21 29 29 H 1.09002 * 109.47152 * 90.02784 * 1 2 3 30 30 H 1.09001 * 109.46980 * 330.02885 * 1 2 3 31 31 H 1.09004 * 109.47113 * 210.02866 * 1 2 3 32 32 H 1.07997 * 125.43877 * 359.97438 * 3 2 1 33 33 H 1.08994 * 109.46602 * 359.96874 * 6 5 4 34 34 H 1.08995 * 109.46976 * 119.97260 * 6 5 4 35 35 H 1.09000 * 109.46962 * 239.97224 * 6 5 4 36 36 H 0.97007 * 120.00107 * 359.97438 * 10 8 7 37 37 H 1.09004 * 109.47047 * 299.99917 * 11 10 8 38 38 H 1.08996 * 109.47299 * 59.99426 * 11 10 8 39 39 H 1.08996 * 109.47292 * 300.00131 * 14 12 11 40 40 H 1.08998 * 109.47141 * 60.00231 * 14 12 11 41 41 H 1.09005 * 109.47214 * 179.97438 * 14 12 11 42 42 H 1.09002 * 109.47335 * 305.00297 * 15 12 11 43 43 H 1.09003 * 109.47008 * 65.00093 * 15 12 11 44 44 H 1.00901 * 110.99506 * 303.95059 * 16 15 12 45 45 H 1.09003 * 109.46648 * 299.99604 * 17 16 15 46 46 H 1.08997 * 109.47166 * 59.99491 * 17 16 15 47 47 H 0.96995 * 120.00174 * 359.97438 * 20 18 17 48 48 H 0.97000 * 119.99956 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3149 1.0713 0.0000 4 8 3.5921 0.6588 -0.0006 5 6 3.6623 -0.6758 -0.0004 6 6 4.9292 -1.4920 -0.0003 7 6 2.3922 -1.1737 0.0068 8 6 1.9914 -2.5920 0.0158 9 8 1.8249 -3.1835 -1.0336 10 7 1.8093 -3.2333 1.1871 11 6 1.4103 -4.6429 1.1961 12 6 1.2737 -5.1251 2.6417 13 1 0.5829 -4.4744 3.1780 14 6 2.6429 -5.0876 3.3234 15 6 0.7374 -6.5579 2.6529 16 7 0.4930 -6.9785 4.0390 17 6 -0.0232 -8.3530 4.0889 18 6 -0.2607 -8.7486 5.5235 19 8 -0.0228 -7.9631 6.4166 20 7 -0.7374 -9.9753 5.8142 21 6 -0.9539 -10.3351 7.1193 22 1 -0.7421 -9.6357 7.9145 23 6 -1.4448 -11.5999 7.4190 24 7 -1.6519 -11.9450 8.6700 25 14 -1.8105 -12.8099 6.0436 26 1 -0.5980 -13.6194 5.7611 27 1 -2.9198 -13.7071 6.4555 28 1 -2.2044 -12.0651 4.8207 29 1 -0.3633 -0.0005 -1.0277 30 1 -0.3633 0.8903 0.5134 31 1 -0.3633 -0.8898 0.5143 32 1 1.9895 2.1011 -0.0004 33 1 5.7911 -0.8249 -0.0010 34 1 4.9566 -2.1203 0.8899 35 1 4.9561 -2.1212 -0.8900 36 1 1.9423 -2.7616 2.0242 37 1 0.4544 -4.7532 0.6840 38 1 2.1670 -5.2380 0.6849 39 1 3.3337 -5.7382 2.7871 40 1 3.0249 -4.0668 3.3155 41 1 2.5455 -5.4307 4.3534 42 1 -0.1952 -6.6012 2.0903 43 1 1.4693 -7.2233 2.1949 44 1 1.3282 -6.8858 4.5975 45 1 -0.9611 -8.4091 3.5362 46 1 0.7036 -9.0306 3.6410 47 1 -0.9280 -10.6033 5.1000 48 1 -1.9950 -12.8278 8.8792 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666540658.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:16:58 Heat of formation + Delta-G solvation = -67.381961 kcal Electronic energy + Delta-G solvation = -27966.376712 eV Core-core repulsion = 23829.689598 eV Total energy + Delta-G solvation = -4136.687114 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 2.06 seconds Orbital eigenvalues (eV) -42.96211 -39.82341 -38.57468 -37.33634 -34.96184 -34.34812 -33.91919 -33.01850 -32.24334 -31.63747 -28.73102 -27.59502 -27.29222 -26.63984 -24.96790 -23.54100 -22.56251 -20.78805 -20.35431 -19.95869 -19.36765 -18.40661 -18.04025 -16.93407 -16.53771 -16.21407 -15.88911 -15.79456 -15.56617 -14.93771 -14.70331 -14.62491 -14.30601 -13.86288 -13.81760 -13.69762 -13.49623 -13.37523 -13.32699 -13.12166 -13.08462 -12.83764 -12.78705 -12.70718 -12.32489 -12.03058 -11.77400 -11.73663 -11.30861 -11.19766 -11.05369 -10.98097 -10.60166 -10.40454 -9.98415 -9.82077 -9.58251 -9.39175 -8.89900 -8.60845 -8.21340 -8.15634 -6.32002 -3.83512 1.19785 1.80659 2.21577 2.41923 2.94305 3.02395 3.06147 3.14670 3.73036 4.02167 4.06355 4.10310 4.35173 4.51804 4.60952 4.64128 4.71969 4.77098 4.84207 4.90076 4.95201 5.12386 5.20691 5.20997 5.23827 5.28915 5.34053 5.43288 5.46432 5.49689 5.53404 5.61925 5.65589 5.70978 5.77187 5.80257 5.91220 5.97857 5.99818 6.06199 6.15765 6.64133 7.06029 7.15235 7.54731 7.57613 7.87869 8.13459 8.58826 8.93949 9.41507 9.81579 10.81076 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.027172 B = 0.001593 C = 0.001591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.212163 B =17572.660317 C =17597.057384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.147 4.147 3 C -0.040 4.040 4 O -0.173 6.173 5 C 0.045 3.955 6 C -0.082 4.082 7 C -0.232 4.232 8 C 0.593 3.407 9 O -0.532 6.532 10 N -0.717 5.717 11 C 0.124 3.876 12 C -0.102 4.102 13 H 0.090 0.910 14 C -0.153 4.153 15 C 0.066 3.934 16 N -0.668 5.668 17 C 0.047 3.953 18 C 0.450 3.550 19 O -0.565 6.565 20 N -0.590 5.590 21 C -0.305 4.305 22 H 0.120 0.880 23 C 0.041 3.959 24 N -0.881 5.881 25 Si 0.880 3.120 26 H -0.271 1.271 27 H -0.276 1.276 28 H -0.269 1.269 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.208 0.792 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.403 0.597 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.055 0.945 40 H 0.054 0.946 41 H 0.068 0.932 42 H 0.074 0.926 43 H 0.031 0.969 44 H 0.350 0.650 45 H 0.088 0.912 46 H 0.045 0.955 47 H 0.371 0.629 48 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.292 22.617 -20.499 32.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.149 4.149 3 C -0.106 4.106 4 O -0.069 6.069 5 C -0.007 4.007 6 C -0.138 4.138 7 C -0.237 4.237 8 C 0.378 3.622 9 O -0.409 6.409 10 N -0.369 5.369 11 C 0.000 4.000 12 C -0.121 4.121 13 H 0.108 0.892 14 C -0.210 4.210 15 C -0.064 4.064 16 N -0.302 5.302 17 C -0.085 4.085 18 C 0.235 3.765 19 O -0.447 6.447 20 N -0.230 5.230 21 C -0.434 4.434 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.521 5.521 25 Si 0.706 3.294 26 H -0.197 1.197 27 H -0.202 1.202 28 H -0.195 1.195 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.224 0.776 33 H 0.102 0.898 34 H 0.109 0.891 35 H 0.110 0.890 36 H 0.238 0.762 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.087 0.913 42 H 0.093 0.907 43 H 0.049 0.951 44 H 0.171 0.829 45 H 0.106 0.894 46 H 0.063 0.937 47 H 0.203 0.797 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 9.875 22.998 -20.441 32.314 hybrid contribution 0.189 -1.435 -0.791 1.649 sum 10.063 21.563 -21.232 31.891 Atomic orbital electron populations 1.20210 0.88491 1.02992 1.02672 1.21361 0.96883 0.90473 1.06165 1.23647 0.79538 0.99600 1.07828 1.83734 1.29659 1.21843 1.71642 1.22539 0.96007 0.80861 1.01274 1.20467 0.91121 0.97870 1.04388 1.20992 0.93260 0.93953 1.15464 1.17272 0.76550 0.84646 0.83705 1.90818 1.50537 1.67727 1.31805 1.46016 1.69898 1.12554 1.08444 1.21428 1.00922 0.80619 0.97008 1.21364 0.98419 0.97804 0.94501 0.89172 1.21905 0.95881 1.01709 1.01533 1.21882 0.99929 0.93938 0.90638 1.60088 1.37867 1.22755 1.09470 1.21709 1.00673 0.89460 0.96693 1.19711 0.84009 0.82958 0.89793 1.90559 1.55144 1.50927 1.48089 1.42212 1.59319 1.13125 1.08335 1.19434 1.40982 1.00173 0.82829 0.86281 1.25043 0.97471 0.97181 0.96475 1.69623 1.44493 1.21115 1.16879 0.86667 0.79109 0.81809 0.81778 1.19663 1.20155 1.19458 0.90933 0.90982 0.91338 0.77580 0.89758 0.89108 0.89011 0.76184 0.91070 0.91208 0.92597 0.92720 0.91332 0.90709 0.95099 0.82888 0.89413 0.93720 0.79671 0.91610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.59 10.38 36.01 0.37 -0.21 16 2 C -0.15 -1.23 6.38 -102.49 -0.65 -1.89 16 3 C -0.04 -0.27 11.96 29.30 0.35 0.08 16 4 O -0.17 -1.43 10.52 7.66 0.08 -1.35 16 5 C 0.05 0.38 7.37 -34.96 -0.26 0.12 16 6 C -0.08 -0.46 10.18 36.01 0.37 -0.09 16 7 C -0.23 -2.26 6.07 -103.28 -0.63 -2.89 16 8 C 0.59 6.51 7.41 -12.54 -0.09 6.42 16 9 O -0.53 -7.88 17.11 5.26 0.09 -7.79 16 10 N -0.72 -6.13 5.28 -61.40 -0.32 -6.45 16 11 C 0.12 1.09 5.06 -4.04 -0.02 1.07 16 12 C -0.10 -0.90 2.63 -90.62 -0.24 -1.14 16 13 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 14 C -0.15 -1.27 8.84 37.15 0.33 -0.94 16 15 C 0.07 0.71 5.14 -3.83 -0.02 0.69 16 16 N -0.67 -9.83 6.13 -115.06 -0.70 -10.54 16 17 C 0.05 0.77 6.17 -4.97 -0.03 0.74 16 18 C 0.45 10.11 7.82 -10.98 -0.09 10.03 16 19 O -0.57 -15.04 15.78 5.55 0.09 -14.95 16 20 N -0.59 -14.00 5.09 -10.96 -0.06 -14.05 16 21 C -0.31 -8.62 10.16 -14.93 -0.15 -8.78 16 22 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16 23 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 24 N -0.88 -25.68 13.96 55.50 0.77 -24.90 16 25 Si 0.88 19.30 27.74 -169.99 -4.71 14.58 16 26 H -0.27 -5.82 7.11 56.52 0.40 -5.41 16 27 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 28 H -0.27 -5.38 6.52 56.52 0.37 -5.02 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.21 0.62 8.06 -52.49 -0.42 0.20 16 33 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.40 2.75 7.64 -40.82 -0.31 2.44 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.05 0.38 7.18 -51.93 -0.37 0.00 16 41 H 0.07 0.67 6.68 -51.93 -0.35 0.32 16 42 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.35 5.31 6.68 -39.29 -0.26 5.05 16 45 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 46 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.37 7.70 5.76 -40.82 -0.24 7.46 16 48 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 405.10 15.07 6.10 6.10 Total: -1.00 -36.00 405.10 -6.94 -42.95 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: -7.43 Total: 12.16 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: -0.86 Total: 4.24 kcal Atomic # 7 Polarization: -55.64 SS G_CDS: -0.31 Total: -55.95 kcal Atomic # 8 Polarization: -24.35 SS G_CDS: 0.26 Total: -24.09 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -4.71 Total: 14.58 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -36.00 -6.94 -42.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666540658.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.433 kcal (2) G-P(sol) polarization free energy of solvation -36.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.06 seconds