Wall clock time and date at job start Tue Mar 31 2020 20:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34181 * 127.02059 * 2 1 4 4 O 1.34214 * 109.12131 * 180.02562 * 3 2 1 5 5 C 1.33649 * 110.91059 * 359.97438 * 4 3 2 6 6 C 1.50708 * 125.80370 * 180.02562 * 5 4 3 7 7 C 1.36421 * 108.39581 * 359.71469 * 5 4 3 8 8 C 1.47381 * 127.18938 * 180.30663 * 7 5 4 9 9 O 1.21616 * 119.99873 * 270.14460 * 8 7 5 10 10 N 1.34771 * 120.00204 * 90.15313 * 8 7 5 11 11 C 1.46500 * 120.00275 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.47277 * 179.97438 * 11 10 8 13 13 H 1.09005 * 109.46901 * 55.00049 * 12 11 10 14 14 C 1.52995 * 109.47177 * 294.99921 * 12 11 10 15 15 C 1.52995 * 109.47143 * 174.99663 * 12 11 10 16 16 N 1.46898 * 109.47379 * 185.00297 * 15 12 11 17 17 C 1.46906 * 111.00329 * 180.02562 * 16 15 12 18 18 C 1.50699 * 109.47022 * 179.97438 * 17 16 15 19 19 O 1.21286 * 120.00254 * 359.97438 * 18 17 16 20 20 N 1.34782 * 119.99478 * 179.97438 * 18 17 16 21 21 C 1.37103 * 119.99450 * 180.02562 * 20 18 17 22 22 H 1.07997 * 120.00307 * 359.97438 * 21 20 18 23 23 C 1.38948 * 119.99494 * 180.02562 * 21 20 18 24 24 N 1.31415 * 119.99883 * 179.97438 * 23 21 20 25 25 Si 1.86798 * 120.00174 * 359.97438 * 23 21 20 26 26 H 1.48507 * 109.47118 * 90.00451 * 25 23 21 27 27 H 1.48498 * 109.47220 * 210.00190 * 25 23 21 28 28 H 1.48498 * 109.47497 * 330.00371 * 25 23 21 29 29 H 1.09002 * 109.47152 * 90.02784 * 1 2 3 30 30 H 1.09001 * 109.46980 * 330.02885 * 1 2 3 31 31 H 1.09004 * 109.47113 * 210.02866 * 1 2 3 32 32 H 1.07997 * 125.43877 * 359.97438 * 3 2 1 33 33 H 1.08994 * 109.46602 * 359.96874 * 6 5 4 34 34 H 1.08995 * 109.46976 * 119.97260 * 6 5 4 35 35 H 1.09000 * 109.46962 * 239.97224 * 6 5 4 36 36 H 0.97007 * 120.00107 * 359.97438 * 10 8 7 37 37 H 1.09004 * 109.47047 * 299.99917 * 11 10 8 38 38 H 1.08996 * 109.47299 * 59.99426 * 11 10 8 39 39 H 1.08996 * 109.47292 * 300.00131 * 14 12 11 40 40 H 1.08998 * 109.47141 * 60.00231 * 14 12 11 41 41 H 1.09005 * 109.47214 * 179.97438 * 14 12 11 42 42 H 1.09002 * 109.47335 * 305.00297 * 15 12 11 43 43 H 1.09003 * 109.47008 * 65.00093 * 15 12 11 44 44 H 1.00901 * 110.99506 * 303.95059 * 16 15 12 45 45 H 1.09003 * 109.46648 * 299.99604 * 17 16 15 46 46 H 1.08997 * 109.47166 * 59.99491 * 17 16 15 47 47 H 0.96995 * 120.00174 * 359.97438 * 20 18 17 48 48 H 0.97000 * 119.99956 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3149 1.0713 0.0000 4 8 3.5921 0.6588 -0.0006 5 6 3.6623 -0.6758 -0.0004 6 6 4.9292 -1.4920 -0.0003 7 6 2.3922 -1.1737 0.0068 8 6 1.9914 -2.5920 0.0158 9 8 1.8249 -3.1835 -1.0336 10 7 1.8093 -3.2333 1.1871 11 6 1.4103 -4.6429 1.1961 12 6 1.2737 -5.1251 2.6417 13 1 0.5829 -4.4744 3.1780 14 6 2.6429 -5.0876 3.3234 15 6 0.7374 -6.5579 2.6529 16 7 0.4930 -6.9785 4.0390 17 6 -0.0232 -8.3530 4.0889 18 6 -0.2607 -8.7486 5.5235 19 8 -0.0228 -7.9631 6.4166 20 7 -0.7374 -9.9753 5.8142 21 6 -0.9539 -10.3351 7.1193 22 1 -0.7421 -9.6357 7.9145 23 6 -1.4448 -11.5999 7.4190 24 7 -1.6519 -11.9450 8.6700 25 14 -1.8105 -12.8099 6.0436 26 1 -0.5980 -13.6194 5.7611 27 1 -2.9198 -13.7071 6.4555 28 1 -2.2044 -12.0651 4.8207 29 1 -0.3633 -0.0005 -1.0277 30 1 -0.3633 0.8903 0.5134 31 1 -0.3633 -0.8898 0.5143 32 1 1.9895 2.1011 -0.0004 33 1 5.7911 -0.8249 -0.0010 34 1 4.9566 -2.1203 0.8899 35 1 4.9561 -2.1212 -0.8900 36 1 1.9423 -2.7616 2.0242 37 1 0.4544 -4.7532 0.6840 38 1 2.1670 -5.2380 0.6849 39 1 3.3337 -5.7382 2.7871 40 1 3.0249 -4.0668 3.3155 41 1 2.5455 -5.4307 4.3534 42 1 -0.1952 -6.6012 2.0903 43 1 1.4693 -7.2233 2.1949 44 1 1.3282 -6.8858 4.5975 45 1 -0.9611 -8.4091 3.5362 46 1 0.7036 -9.0306 3.6410 47 1 -0.9280 -10.6033 5.1000 48 1 -1.9950 -12.8278 8.8792 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666540658.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:16:56 Heat of formation + Delta-G solvation = -95.722923 kcal Electronic energy + Delta-G solvation = -27967.605668 eV Core-core repulsion = 23829.689598 eV Total energy + Delta-G solvation = -4137.916070 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 2.18 seconds Orbital eigenvalues (eV) -43.54724 -40.67377 -40.29476 -38.34444 -36.21239 -35.69344 -34.94740 -33.78549 -33.60934 -33.05540 -29.35126 -28.87534 -27.94400 -27.29982 -26.42464 -24.75494 -23.43641 -21.57136 -21.31218 -20.97773 -20.61506 -20.20558 -18.75592 -17.94285 -17.50357 -17.22330 -16.89815 -16.83539 -16.64160 -16.42739 -15.81425 -15.55134 -15.35552 -15.03208 -14.81290 -14.60169 -14.38533 -14.29642 -14.23121 -14.17514 -13.85553 -13.79168 -13.58861 -13.52310 -13.36943 -13.27565 -13.12789 -12.81640 -12.41455 -12.31048 -12.12805 -11.96936 -11.85412 -11.76176 -11.51084 -11.28666 -10.46830 -10.43339 -10.24816 -10.18973 -9.45522 -9.31764 -8.41219 -6.02168 0.60656 1.21974 1.30996 1.35716 1.39441 1.44984 1.86950 1.95781 2.22193 2.23377 2.76023 3.15382 3.42569 3.52318 3.70444 3.87979 3.92477 3.97888 4.00349 4.17861 4.20345 4.36343 4.43887 4.52044 4.54630 4.55736 4.57319 4.61510 4.72351 4.73068 4.76954 4.79564 4.94582 4.96506 4.99720 5.01770 5.19617 5.22381 5.33563 5.41399 5.45138 5.52858 5.90639 6.05059 6.06518 6.39330 6.42921 6.59895 6.88082 7.09329 7.39902 7.96287 8.76338 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.027172 B = 0.001593 C = 0.001591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.212163 B =17572.660317 C =17597.057384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.171 4.171 3 C -0.031 4.031 4 O -0.179 6.179 5 C 0.043 3.957 6 C -0.083 4.083 7 C -0.261 4.261 8 C 0.597 3.403 9 O -0.578 6.578 10 N -0.704 5.704 11 C 0.131 3.869 12 C -0.090 4.090 13 H 0.083 0.917 14 C -0.151 4.151 15 C 0.067 3.933 16 N -0.686 5.686 17 C 0.061 3.939 18 C 0.448 3.552 19 O -0.614 6.614 20 N -0.591 5.591 21 C -0.329 4.329 22 H 0.055 0.945 23 C -0.015 4.015 24 N -0.934 5.934 25 Si 0.965 3.035 26 H -0.257 1.257 27 H -0.276 1.276 28 H -0.231 1.231 29 H 0.069 0.931 30 H 0.094 0.906 31 H 0.055 0.945 32 H 0.244 0.756 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.088 0.912 36 H 0.413 0.587 37 H 0.065 0.935 38 H 0.070 0.930 39 H 0.061 0.939 40 H 0.068 0.932 41 H 0.052 0.948 42 H 0.082 0.918 43 H 0.047 0.953 44 H 0.345 0.655 45 H 0.113 0.887 46 H 0.078 0.922 47 H 0.390 0.610 48 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.663 22.781 -23.425 34.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.173 4.173 3 C -0.096 4.096 4 O -0.075 6.075 5 C -0.009 4.009 6 C -0.139 4.139 7 C -0.265 4.265 8 C 0.383 3.617 9 O -0.458 6.458 10 N -0.355 5.355 11 C 0.007 3.993 12 C -0.109 4.109 13 H 0.101 0.899 14 C -0.208 4.208 15 C -0.062 4.062 16 N -0.320 5.320 17 C -0.072 4.072 18 C 0.236 3.764 19 O -0.499 6.499 20 N -0.233 5.233 21 C -0.459 4.459 22 H 0.074 0.926 23 C -0.214 4.214 24 N -0.575 5.575 25 Si 0.785 3.215 26 H -0.181 1.181 27 H -0.201 1.201 28 H -0.155 1.155 29 H 0.087 0.913 30 H 0.113 0.887 31 H 0.074 0.926 32 H 0.260 0.740 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.106 0.894 36 H 0.249 0.751 37 H 0.083 0.917 38 H 0.089 0.911 39 H 0.080 0.920 40 H 0.087 0.913 41 H 0.071 0.929 42 H 0.100 0.900 43 H 0.065 0.935 44 H 0.165 0.835 45 H 0.131 0.869 46 H 0.096 0.904 47 H 0.225 0.775 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 10.254 23.188 -23.366 34.478 hybrid contribution 0.116 -1.340 0.220 1.363 sum 10.370 21.848 -23.145 33.475 Atomic orbital electron populations 1.20219 0.87764 1.03515 1.02617 1.21643 0.97680 0.90525 1.07407 1.24345 0.78683 1.00802 1.05789 1.83757 1.30448 1.21741 1.71552 1.22971 0.96487 0.81107 1.00348 1.20587 0.90642 0.97998 1.04680 1.21091 0.94460 0.93635 1.17336 1.17458 0.75726 0.85084 0.83415 1.90787 1.52834 1.68804 1.33336 1.45925 1.68736 1.12478 1.08368 1.21336 1.00646 0.80646 0.96700 1.21211 0.98507 0.96782 0.94367 0.89908 1.21882 0.95672 1.02744 1.00498 1.21958 1.00912 0.94910 0.88419 1.60085 1.38080 1.22028 1.11795 1.21638 1.02983 0.90913 0.91640 1.21011 0.81386 0.81729 0.92304 1.90538 1.56459 1.52243 1.50620 1.42042 1.60045 1.14224 1.06972 1.19016 1.43024 1.00026 0.83800 0.92638 1.26119 0.96223 0.99090 0.99948 1.69806 1.45414 1.22160 1.20083 0.85363 0.79260 0.78320 0.78574 1.18112 1.20083 1.15466 0.91264 0.88697 0.92570 0.74002 0.88034 0.88020 0.89382 0.75055 0.91693 0.91121 0.91959 0.91312 0.92877 0.89964 0.93521 0.83464 0.86885 0.90429 0.77457 0.91154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.07 10.38 71.24 0.74 -0.33 16 2 C -0.17 -2.69 6.38 -18.49 -0.12 -2.81 16 3 C -0.03 -0.36 11.96 66.89 0.80 0.44 16 4 O -0.18 -2.67 10.52 4.51 0.05 -2.63 16 5 C 0.04 0.68 7.37 25.26 0.19 0.86 16 6 C -0.08 -0.82 10.18 71.24 0.72 -0.09 16 7 C -0.26 -4.94 6.07 -18.99 -0.12 -5.06 16 8 C 0.60 12.96 7.41 86.65 0.64 13.60 16 9 O -0.58 -17.27 17.11 -4.08 -0.07 -17.34 16 10 N -0.70 -11.39 5.28 -466.41 -2.46 -13.86 16 11 C 0.13 2.12 5.06 86.38 0.44 2.56 16 12 C -0.09 -1.44 2.63 -10.80 -0.03 -1.47 16 13 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 14 C -0.15 -2.27 8.84 71.98 0.64 -1.63 16 15 C 0.07 1.27 5.14 86.30 0.44 1.71 16 16 N -0.69 -18.97 6.13 -517.92 -3.17 -22.14 16 17 C 0.06 1.79 6.17 85.56 0.53 2.32 16 18 C 0.45 19.98 7.82 87.66 0.69 20.67 16 19 O -0.61 -33.75 15.78 -3.05 -0.05 -33.80 16 20 N -0.59 -27.68 5.09 -306.98 -1.56 -29.25 16 21 C -0.33 -19.27 10.16 84.04 0.85 -18.42 16 22 H 0.06 3.87 7.39 -2.91 -0.02 3.85 16 23 C -0.02 -0.84 5.50 84.93 0.47 -0.37 16 24 N -0.93 -56.24 13.96 21.66 0.30 -55.94 16 25 Si 0.96 38.59 27.74 68.60 1.90 40.49 16 26 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 27 H -0.28 -10.99 7.11 99.48 0.71 -10.28 16 28 H -0.23 -7.78 6.52 99.48 0.65 -7.13 16 29 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 32 H 0.24 0.71 8.06 -2.91 -0.02 0.68 16 33 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.41 5.15 7.64 -92.70 -0.71 4.45 16 37 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 38 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.07 0.82 7.18 -2.39 -0.02 0.81 16 41 H 0.05 0.99 6.68 -2.38 -0.02 0.98 16 42 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.35 10.16 6.68 -89.69 -0.60 9.57 16 45 H 0.11 2.84 8.14 -2.39 -0.02 2.82 16 46 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 47 H 0.39 15.05 5.76 -92.71 -0.53 14.51 16 48 H 0.28 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -84.27 405.10 0.92 -83.35 By element: Atomic # 1 Polarization: 40.04 SS G_CDS: -0.90 Total: 39.14 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: 6.88 Total: 11.97 kcal Atomic # 7 Polarization: -114.29 SS G_CDS: -6.90 Total: -121.19 kcal Atomic # 8 Polarization: -53.69 SS G_CDS: -0.07 Total: -53.76 kcal Atomic # 14 Polarization: 38.59 SS G_CDS: 1.90 Total: 40.49 kcal Total: -84.27 0.92 -83.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666540658.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.376 kcal (2) G-P(sol) polarization free energy of solvation -84.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.18 seconds