Wall clock time and date at job start Tue Mar 31 2020 21:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50693 * 109.47199 * 2 1 4 4 O 1.33655 * 125.80192 * 270.34909 * 3 2 1 5 5 C 1.34213 * 110.91275 * 180.14449 * 4 3 2 6 6 C 1.34178 * 109.12071 * 359.54836 * 5 4 3 7 7 C 1.36414 * 125.80485 * 89.99521 * 3 2 1 8 8 C 1.47377 * 127.19315 * 0.03784 * 7 3 2 9 9 O 1.21617 * 120.00022 * 359.97438 * 8 7 3 10 10 N 1.34779 * 120.00392 * 179.97438 * 8 7 3 11 11 C 1.46504 * 119.99928 * 179.97438 * 10 8 7 12 12 C 1.53004 * 109.46848 * 180.02562 * 11 10 8 13 13 H 1.09002 * 109.47130 * 55.00153 * 12 11 10 14 14 C 1.52996 * 109.46916 * 295.00067 * 12 11 10 15 15 C 1.52997 * 109.47147 * 175.00275 * 12 11 10 16 16 N 1.46899 * 109.47093 * 185.00198 * 15 12 11 17 17 C 1.46904 * 110.99648 * 179.97438 * 16 15 12 18 18 C 1.50700 * 109.46947 * 179.97438 * 17 16 15 19 19 O 1.21300 * 119.99782 * 359.97438 * 18 17 16 20 20 N 1.34774 * 120.00429 * 180.02562 * 18 17 16 21 21 C 1.37097 * 120.00368 * 180.02562 * 20 18 17 22 22 H 1.07994 * 120.00095 * 359.97438 * 21 20 18 23 23 C 1.38951 * 119.99664 * 179.97438 * 21 20 18 24 24 N 1.31414 * 119.99267 * 179.97438 * 23 21 20 25 25 Si 1.86793 * 120.00243 * 359.97438 * 23 21 20 26 26 H 1.48506 * 109.47033 * 90.00422 * 25 23 21 27 27 H 1.48495 * 109.47127 * 209.99964 * 25 23 21 28 28 H 1.48494 * 109.47452 * 330.00352 * 25 23 21 29 29 H 1.08991 * 109.47332 * 300.00423 * 1 2 3 30 30 H 1.09005 * 109.46497 * 60.00672 * 1 2 3 31 31 H 1.08996 * 109.46844 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47052 * 239.99496 * 2 1 3 33 33 H 1.09000 * 109.46447 * 119.99833 * 2 1 3 34 34 H 1.08002 * 125.44315 * 179.81711 * 5 4 3 35 35 H 1.08004 * 127.02354 * 180.30025 * 6 5 4 36 36 H 0.96994 * 119.99598 * 0.02562 * 10 8 7 37 37 H 1.09000 * 109.47042 * 299.99431 * 11 10 8 38 38 H 1.08999 * 109.47079 * 59.99891 * 11 10 8 39 39 H 1.09002 * 109.47291 * 299.99987 * 14 12 11 40 40 H 1.09003 * 109.47539 * 59.99901 * 14 12 11 41 41 H 1.09002 * 109.47196 * 179.97438 * 14 12 11 42 42 H 1.09004 * 109.46999 * 304.99918 * 15 12 11 43 43 H 1.08992 * 109.47195 * 64.99345 * 15 12 11 44 44 H 1.00894 * 111.00452 * 56.04146 * 16 15 12 45 45 H 1.09000 * 109.47147 * 299.99328 * 17 16 15 46 46 H 1.08997 * 109.47068 * 59.99832 * 17 16 15 47 47 H 0.97007 * 119.99775 * 359.97438 * 20 18 17 48 48 H 0.97005 * 119.99475 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 8 2.2868 2.1601 -1.0840 5 6 2.7241 3.3812 -0.7391 6 6 2.7575 3.4745 0.5990 7 6 2.2983 2.1732 1.1063 8 6 2.1553 1.7667 2.5157 9 8 1.7605 0.6494 2.7892 10 7 2.4620 2.6331 3.5015 11 6 2.3192 2.2291 4.9025 12 6 2.7291 3.3891 5.8120 13 1 2.1494 4.2754 5.5541 14 6 4.2191 3.6819 5.6250 15 6 2.4627 3.0122 7.2707 16 7 2.7430 4.1672 8.1340 17 6 2.4970 3.8417 9.5452 18 6 2.7953 5.0476 10.3983 19 8 3.1759 6.0769 9.8815 20 7 2.6402 4.9823 11.7355 21 6 2.9111 6.0795 12.5115 22 1 3.2491 6.9962 12.0513 23 6 2.7506 6.0121 13.8900 24 7 3.0107 7.0638 14.6339 25 14 2.1653 4.4269 14.6859 26 1 3.3381 3.5837 15.0307 27 1 1.4040 4.7446 15.9206 28 1 1.2886 3.6920 13.7391 29 1 -0.3633 0.5138 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.0006 4.1652 -1.4286 35 1 3.0593 4.3307 1.1839 36 1 2.7765 3.5243 3.2833 37 1 1.2809 1.9626 5.0998 38 1 2.9589 1.3688 5.0995 39 1 4.7988 2.7956 5.8829 40 1 4.4090 3.9504 4.5857 41 1 4.5111 4.5086 6.2726 42 1 1.4194 2.7178 7.3852 43 1 3.1079 2.1810 7.5549 44 1 2.2036 4.9709 7.8493 45 1 1.4539 3.5534 9.6751 46 1 3.1423 3.0161 9.8454 47 1 2.3362 4.1590 12.1488 48 1 2.8984 7.0169 15.5962 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666540771.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:18 Heat of formation + Delta-G solvation = -68.592659 kcal Electronic energy + Delta-G solvation = -27811.483424 eV Core-core repulsion = 23674.743811 eV Total energy + Delta-G solvation = -4136.739613 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.00550 -39.78152 -38.55018 -37.28468 -35.06833 -34.36243 -33.93380 -33.31398 -32.14258 -31.63280 -29.27095 -27.59546 -27.00645 -25.11272 -24.16163 -23.35564 -22.77192 -21.24415 -20.85507 -19.95454 -19.33589 -18.41060 -18.14021 -16.72065 -16.45135 -16.24254 -15.95033 -15.80403 -15.38100 -15.11330 -14.96494 -14.72893 -14.40331 -14.34658 -13.97734 -13.66194 -13.33773 -13.30543 -13.19827 -13.05928 -12.72188 -12.66492 -12.58661 -12.08762 -12.03289 -11.96983 -11.80693 -11.41579 -11.25080 -11.10894 -11.08731 -10.92995 -10.59956 -10.25057 -10.23209 -9.98178 -9.57783 -9.36478 -8.98787 -8.60121 -8.20069 -8.14437 -6.31760 -3.83184 0.97979 1.62419 2.36059 2.92925 3.02211 3.05768 3.06798 3.14889 3.73552 4.03358 4.06824 4.10705 4.38883 4.40815 4.65691 4.67252 4.71225 4.82672 4.84166 4.96042 4.98940 5.08417 5.21070 5.22551 5.28597 5.40406 5.46268 5.54008 5.55639 5.61284 5.61887 5.66514 5.77928 5.80678 5.80854 5.84991 5.87218 5.93388 6.05646 6.19955 6.35526 6.59596 7.06482 7.22574 7.54806 7.57924 7.94621 8.13902 8.59173 8.94338 9.41909 9.82114 10.81348 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.029646 B = 0.001549 C = 0.001493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.260341 B =18069.170181 C =18744.755000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.053 4.053 3 C 0.082 3.918 4 O -0.175 6.175 5 C -0.038 4.038 6 C -0.189 4.189 7 C -0.245 4.245 8 C 0.589 3.411 9 O -0.542 6.542 10 N -0.719 5.719 11 C 0.126 3.874 12 C -0.100 4.100 13 H 0.077 0.923 14 C -0.140 4.140 15 C 0.066 3.934 16 N -0.666 5.666 17 C 0.048 3.952 18 C 0.450 3.550 19 O -0.565 6.565 20 N -0.591 5.591 21 C -0.306 4.306 22 H 0.119 0.881 23 C 0.041 3.959 24 N -0.881 5.881 25 Si 0.880 3.120 26 H -0.270 1.270 27 H -0.277 1.277 28 H -0.270 1.270 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.114 0.886 34 H 0.209 0.791 35 H 0.157 0.843 36 H 0.401 0.599 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.053 0.947 40 H 0.044 0.956 41 H 0.077 0.923 42 H 0.030 0.970 43 H 0.075 0.925 44 H 0.350 0.650 45 H 0.045 0.955 46 H 0.087 0.913 47 H 0.371 0.629 48 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.292 -13.788 -30.392 33.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.090 4.090 3 C 0.029 3.971 4 O -0.071 6.071 5 C -0.103 4.103 6 C -0.209 4.209 7 C -0.250 4.250 8 C 0.377 3.623 9 O -0.421 6.421 10 N -0.371 5.371 11 C 0.002 3.998 12 C -0.119 4.119 13 H 0.095 0.905 14 C -0.198 4.198 15 C -0.064 4.064 16 N -0.298 5.298 17 C -0.085 4.085 18 C 0.236 3.764 19 O -0.447 6.447 20 N -0.230 5.230 21 C -0.434 4.434 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.521 5.521 25 Si 0.707 3.293 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.195 1.195 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.132 0.868 34 H 0.225 0.775 35 H 0.175 0.825 36 H 0.236 0.764 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.073 0.927 40 H 0.063 0.937 41 H 0.096 0.904 42 H 0.048 0.952 43 H 0.093 0.907 44 H 0.169 0.831 45 H 0.062 0.938 46 H 0.106 0.894 47 H 0.203 0.797 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.664 -13.990 -30.545 33.701 hybrid contribution -1.147 -0.390 0.962 1.547 sum -3.811 -14.380 -29.582 33.112 Atomic orbital electron populations 1.21691 0.93232 1.02765 1.02399 1.20414 0.97069 0.86350 1.05157 1.22893 0.96762 0.94374 0.83094 1.83780 1.65097 1.23228 1.35026 1.23889 1.03821 0.86180 0.96449 1.22891 1.05583 0.97751 0.94631 1.21153 1.14087 0.95881 0.93870 1.17176 0.76972 0.84403 0.83721 1.90763 1.46966 1.20313 1.84065 1.45778 1.68086 1.17082 1.06121 1.21406 1.01720 0.97524 0.79166 1.21344 0.98595 0.97660 0.94334 0.90472 1.21763 0.94114 1.03060 1.00845 1.21896 0.98880 0.94296 0.91325 1.60033 1.62672 1.06218 1.00896 1.21702 0.99619 0.98038 0.89118 1.19714 0.84512 0.89624 0.82594 1.90563 1.49824 1.31910 1.72415 1.42210 1.61094 1.13678 1.06027 1.19433 1.42518 0.92855 0.88622 0.86290 1.25041 0.97705 0.97428 0.95989 1.69627 1.47890 1.28666 1.05936 0.86663 0.79378 0.83320 0.79970 1.19586 1.20192 1.19535 0.91846 0.92634 0.91243 0.89984 0.86757 0.77495 0.82495 0.76391 0.91381 0.91067 0.92743 0.93705 0.90363 0.95208 0.90664 0.83071 0.93750 0.89439 0.79680 0.91618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 9.90 37.16 0.37 -0.62 16 2 C -0.05 -0.40 5.94 -27.88 -0.17 -0.56 16 3 C 0.08 0.73 6.63 -34.97 -0.23 0.50 16 4 O -0.18 -1.42 10.52 7.65 0.08 -1.34 16 5 C -0.04 -0.22 12.03 29.30 0.35 0.13 16 6 C -0.19 -1.30 10.60 -37.45 -0.40 -1.69 16 7 C -0.25 -2.30 6.31 -103.28 -0.65 -2.95 16 8 C 0.59 6.34 7.81 -12.54 -0.10 6.25 16 9 O -0.54 -7.21 14.84 5.26 0.08 -7.13 16 10 N -0.72 -6.31 5.28 -61.39 -0.32 -6.63 16 11 C 0.13 1.14 5.06 -4.04 -0.02 1.12 16 12 C -0.10 -0.91 2.57 -90.62 -0.23 -1.14 16 13 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 14 C -0.14 -1.35 8.95 37.16 0.33 -1.02 16 15 C 0.07 0.71 5.07 -3.83 -0.02 0.69 16 16 N -0.67 -9.68 5.58 -115.06 -0.64 -10.33 16 17 C 0.05 0.77 6.17 -4.97 -0.03 0.74 16 18 C 0.45 10.09 7.82 -10.99 -0.09 10.00 16 19 O -0.57 -14.99 15.78 5.54 0.09 -14.90 16 20 N -0.59 -14.00 5.09 -10.96 -0.06 -14.06 16 21 C -0.31 -8.63 10.16 -14.93 -0.15 -8.79 16 22 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16 23 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 24 N -0.88 -25.71 13.96 55.50 0.77 -24.93 16 25 Si 0.88 19.33 27.74 -169.99 -4.71 14.62 16 26 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 27 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 28 H -0.27 -5.39 6.52 56.52 0.37 -5.03 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.11 1.00 6.48 -51.93 -0.34 0.67 16 34 H 0.21 0.43 8.06 -52.49 -0.42 0.01 16 35 H 0.16 0.71 7.74 -52.48 -0.41 0.30 16 36 H 0.40 2.75 6.83 -40.82 -0.28 2.47 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.04 0.36 7.18 -51.93 -0.37 -0.01 16 41 H 0.08 0.93 7.75 -51.93 -0.40 0.53 16 42 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.35 5.28 8.43 -39.29 -0.33 4.95 16 45 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 47 H 0.37 7.70 5.76 -40.82 -0.24 7.47 16 48 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 401.68 15.07 6.05 6.05 Total: -1.00 -34.84 401.68 -7.21 -42.04 By element: Atomic # 1 Polarization: 20.33 SS G_CDS: -7.42 Total: 12.92 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: -1.13 Total: 3.69 kcal Atomic # 7 Polarization: -55.70 SS G_CDS: -0.25 Total: -55.95 kcal Atomic # 8 Polarization: -23.62 SS G_CDS: 0.25 Total: -23.38 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -4.71 Total: 14.62 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -34.84 -7.21 -42.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666540771.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.550 kcal (2) G-P(sol) polarization free energy of solvation -34.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds