Wall clock time and date at job start Tue Mar 31 2020 21:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50693 * 109.47199 * 2 1 4 4 O 1.33655 * 125.80192 * 270.34909 * 3 2 1 5 5 C 1.34213 * 110.91275 * 180.14449 * 4 3 2 6 6 C 1.34178 * 109.12071 * 359.54836 * 5 4 3 7 7 C 1.36414 * 125.80485 * 89.99521 * 3 2 1 8 8 C 1.47377 * 127.19315 * 0.03784 * 7 3 2 9 9 O 1.21617 * 120.00022 * 359.97438 * 8 7 3 10 10 N 1.34779 * 120.00392 * 179.97438 * 8 7 3 11 11 C 1.46504 * 119.99928 * 179.97438 * 10 8 7 12 12 C 1.53004 * 109.46848 * 180.02562 * 11 10 8 13 13 H 1.09002 * 109.47130 * 55.00153 * 12 11 10 14 14 C 1.52996 * 109.46916 * 295.00067 * 12 11 10 15 15 C 1.52997 * 109.47147 * 175.00275 * 12 11 10 16 16 N 1.46899 * 109.47093 * 185.00198 * 15 12 11 17 17 C 1.46904 * 110.99648 * 179.97438 * 16 15 12 18 18 C 1.50700 * 109.46947 * 179.97438 * 17 16 15 19 19 O 1.21300 * 119.99782 * 359.97438 * 18 17 16 20 20 N 1.34774 * 120.00429 * 180.02562 * 18 17 16 21 21 C 1.37097 * 120.00368 * 180.02562 * 20 18 17 22 22 H 1.07994 * 120.00095 * 359.97438 * 21 20 18 23 23 C 1.38951 * 119.99664 * 179.97438 * 21 20 18 24 24 N 1.31414 * 119.99267 * 179.97438 * 23 21 20 25 25 Si 1.86793 * 120.00243 * 359.97438 * 23 21 20 26 26 H 1.48506 * 109.47033 * 90.00422 * 25 23 21 27 27 H 1.48495 * 109.47127 * 209.99964 * 25 23 21 28 28 H 1.48494 * 109.47452 * 330.00352 * 25 23 21 29 29 H 1.08991 * 109.47332 * 300.00423 * 1 2 3 30 30 H 1.09005 * 109.46497 * 60.00672 * 1 2 3 31 31 H 1.08996 * 109.46844 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47052 * 239.99496 * 2 1 3 33 33 H 1.09000 * 109.46447 * 119.99833 * 2 1 3 34 34 H 1.08002 * 125.44315 * 179.81711 * 5 4 3 35 35 H 1.08004 * 127.02354 * 180.30025 * 6 5 4 36 36 H 0.96994 * 119.99598 * 0.02562 * 10 8 7 37 37 H 1.09000 * 109.47042 * 299.99431 * 11 10 8 38 38 H 1.08999 * 109.47079 * 59.99891 * 11 10 8 39 39 H 1.09002 * 109.47291 * 299.99987 * 14 12 11 40 40 H 1.09003 * 109.47539 * 59.99901 * 14 12 11 41 41 H 1.09002 * 109.47196 * 179.97438 * 14 12 11 42 42 H 1.09004 * 109.46999 * 304.99918 * 15 12 11 43 43 H 1.08992 * 109.47195 * 64.99345 * 15 12 11 44 44 H 1.00894 * 111.00452 * 56.04146 * 16 15 12 45 45 H 1.09000 * 109.47147 * 299.99328 * 17 16 15 46 46 H 1.08997 * 109.47068 * 59.99832 * 17 16 15 47 47 H 0.97007 * 119.99775 * 359.97438 * 20 18 17 48 48 H 0.97005 * 119.99475 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 8 2.2868 2.1601 -1.0840 5 6 2.7241 3.3812 -0.7391 6 6 2.7575 3.4745 0.5990 7 6 2.2983 2.1732 1.1063 8 6 2.1553 1.7667 2.5157 9 8 1.7605 0.6494 2.7892 10 7 2.4620 2.6331 3.5015 11 6 2.3192 2.2291 4.9025 12 6 2.7291 3.3891 5.8120 13 1 2.1494 4.2754 5.5541 14 6 4.2191 3.6819 5.6250 15 6 2.4627 3.0122 7.2707 16 7 2.7430 4.1672 8.1340 17 6 2.4970 3.8417 9.5452 18 6 2.7953 5.0476 10.3983 19 8 3.1759 6.0769 9.8815 20 7 2.6402 4.9823 11.7355 21 6 2.9111 6.0795 12.5115 22 1 3.2491 6.9962 12.0513 23 6 2.7506 6.0121 13.8900 24 7 3.0107 7.0638 14.6339 25 14 2.1653 4.4269 14.6859 26 1 3.3381 3.5837 15.0307 27 1 1.4040 4.7446 15.9206 28 1 1.2886 3.6920 13.7391 29 1 -0.3633 0.5138 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.0006 4.1652 -1.4286 35 1 3.0593 4.3307 1.1839 36 1 2.7765 3.5243 3.2833 37 1 1.2809 1.9626 5.0998 38 1 2.9589 1.3688 5.0995 39 1 4.7988 2.7956 5.8829 40 1 4.4090 3.9504 4.5857 41 1 4.5111 4.5086 6.2726 42 1 1.4194 2.7178 7.3852 43 1 3.1079 2.1810 7.5549 44 1 2.2036 4.9709 7.8493 45 1 1.4539 3.5534 9.6751 46 1 3.1423 3.0161 9.8454 47 1 2.3362 4.1590 12.1488 48 1 2.8984 7.0169 15.5962 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666540771.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:17 Heat of formation + Delta-G solvation = -95.537871 kcal Electronic energy + Delta-G solvation = -27812.651856 eV Core-core repulsion = 23674.743811 eV Total energy + Delta-G solvation = -4137.908046 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.56347 -40.59477 -40.27544 -38.27566 -36.23483 -35.72353 -34.96109 -34.04149 -33.73090 -32.93926 -29.83215 -28.96129 -27.77791 -26.54912 -25.11801 -24.24047 -23.59640 -21.87077 -21.67832 -21.26511 -20.65461 -20.14543 -18.84197 -17.79200 -17.32605 -17.08912 -16.99380 -16.84264 -16.71041 -16.29159 -15.83461 -15.66885 -15.42707 -15.29281 -15.04038 -14.93337 -14.50541 -14.41170 -14.36536 -13.91046 -13.83671 -13.56696 -13.45239 -13.26593 -13.21769 -13.01454 -12.86541 -12.50772 -12.41026 -12.01757 -12.00221 -11.97935 -11.92541 -11.71327 -11.50862 -11.06044 -10.84780 -10.42794 -10.24299 -10.11470 -9.55079 -9.28967 -8.41149 -6.01965 0.31816 1.12626 1.30660 1.36109 1.44802 1.81690 1.96469 2.22111 2.23422 2.31448 2.77006 3.15372 3.42853 3.55129 3.75165 3.85946 3.87835 4.00477 4.07004 4.14720 4.18663 4.29169 4.43776 4.44865 4.50856 4.55516 4.59771 4.64412 4.71955 4.79528 4.83998 4.94676 4.97663 5.01844 5.07592 5.09213 5.24348 5.29761 5.37490 5.45424 5.52844 5.53188 5.90926 6.03955 6.05407 6.40570 6.52774 6.60179 6.88452 7.19106 7.40369 7.96922 8.76451 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.029646 B = 0.001549 C = 0.001493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.260341 B =18069.170181 C =18744.755000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.053 4.053 3 C 0.069 3.931 4 O -0.182 6.182 5 C -0.031 4.031 6 C -0.199 4.199 7 C -0.268 4.268 8 C 0.584 3.416 9 O -0.575 6.575 10 N -0.710 5.710 11 C 0.133 3.867 12 C -0.088 4.088 13 H 0.081 0.919 14 C -0.136 4.136 15 C 0.068 3.932 16 N -0.681 5.681 17 C 0.062 3.938 18 C 0.448 3.552 19 O -0.614 6.614 20 N -0.592 5.592 21 C -0.330 4.330 22 H 0.055 0.945 23 C -0.015 4.015 24 N -0.934 5.934 25 Si 0.965 3.035 26 H -0.258 1.258 27 H -0.275 1.275 28 H -0.231 1.231 29 H 0.041 0.959 30 H 0.062 0.938 31 H 0.082 0.918 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.247 0.753 35 H 0.179 0.821 36 H 0.411 0.589 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.052 0.948 40 H 0.060 0.940 41 H 0.053 0.947 42 H 0.045 0.955 43 H 0.082 0.918 44 H 0.344 0.656 45 H 0.076 0.924 46 H 0.113 0.887 47 H 0.390 0.610 48 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.189 -16.286 -31.635 35.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.090 4.090 3 C 0.016 3.984 4 O -0.078 6.078 5 C -0.096 4.096 6 C -0.218 4.218 7 C -0.273 4.273 8 C 0.373 3.627 9 O -0.456 6.456 10 N -0.362 5.362 11 C 0.009 3.991 12 C -0.107 4.107 13 H 0.100 0.900 14 C -0.194 4.194 15 C -0.061 4.061 16 N -0.314 5.314 17 C -0.071 4.071 18 C 0.236 3.764 19 O -0.498 6.498 20 N -0.233 5.233 21 C -0.459 4.459 22 H 0.074 0.926 23 C -0.214 4.214 24 N -0.575 5.575 25 Si 0.785 3.215 26 H -0.182 1.182 27 H -0.201 1.201 28 H -0.154 1.154 29 H 0.061 0.939 30 H 0.081 0.919 31 H 0.101 0.899 32 H 0.119 0.881 33 H 0.116 0.884 34 H 0.263 0.737 35 H 0.196 0.804 36 H 0.248 0.752 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.071 0.929 40 H 0.079 0.921 41 H 0.072 0.928 42 H 0.063 0.937 43 H 0.100 0.900 44 H 0.163 0.837 45 H 0.094 0.906 46 H 0.131 0.869 47 H 0.225 0.775 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.555 -16.488 -31.816 36.010 hybrid contribution -0.799 0.524 1.228 1.556 sum -4.354 -15.964 -30.588 34.777 Atomic orbital electron populations 1.21650 0.92864 1.03413 1.01646 1.20410 0.97346 0.86036 1.05210 1.23118 0.96994 0.94960 0.83359 1.83790 1.65177 1.24053 1.34815 1.24693 1.02039 0.85863 0.97009 1.23177 1.05914 0.97422 0.95278 1.21271 1.15258 0.97476 0.93252 1.17450 0.76514 0.84120 0.84585 1.90739 1.48583 1.21674 1.84641 1.45698 1.67417 1.17311 1.05741 1.21285 1.01402 0.97181 0.79224 1.21210 0.98228 0.97770 0.93524 0.90021 1.21706 0.94402 1.01968 1.01313 1.21959 0.99939 0.92971 0.91268 1.60029 1.63249 1.07465 1.00641 1.21625 1.01957 0.94830 0.88653 1.21012 0.81917 0.90914 0.82522 1.90542 1.51308 1.34608 1.73344 1.42042 1.61815 1.13115 1.06368 1.19017 1.44390 0.92663 0.89807 0.92647 1.26113 0.97003 1.02296 0.95941 1.69809 1.49086 1.31966 1.06623 0.85362 0.79649 0.77509 0.78986 1.18213 1.20059 1.15443 0.93935 0.91886 0.89934 0.88123 0.88417 0.73720 0.80397 0.75199 0.91661 0.91555 0.92919 0.92107 0.92782 0.93711 0.89955 0.83700 0.90603 0.86873 0.77480 0.91167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.90 71.98 0.71 -1.15 16 2 C -0.05 -0.78 5.94 29.85 0.18 -0.61 16 3 C 0.07 1.19 6.63 25.26 0.17 1.36 16 4 O -0.18 -2.68 10.52 4.47 0.05 -2.64 16 5 C -0.03 -0.30 12.03 66.89 0.80 0.51 16 6 C -0.20 -2.35 10.60 23.65 0.25 -2.10 16 7 C -0.27 -4.85 6.31 -18.99 -0.12 -4.97 16 8 C 0.58 12.37 7.81 86.65 0.68 13.04 16 9 O -0.57 -15.47 14.84 -4.08 -0.06 -15.53 16 10 N -0.71 -11.60 5.28 -466.40 -2.46 -14.06 16 11 C 0.13 2.22 5.06 86.38 0.44 2.65 16 12 C -0.09 -1.45 2.57 -10.79 -0.03 -1.47 16 13 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 14 C -0.14 -2.45 8.95 71.98 0.64 -1.80 16 15 C 0.07 1.29 5.07 86.30 0.44 1.72 16 16 N -0.68 -18.60 5.58 -517.94 -2.89 -21.49 16 17 C 0.06 1.81 6.17 85.56 0.53 2.34 16 18 C 0.45 19.95 7.82 87.66 0.69 20.64 16 19 O -0.61 -33.61 15.78 -3.09 -0.05 -33.65 16 20 N -0.59 -27.72 5.09 -306.98 -1.56 -29.28 16 21 C -0.33 -19.30 10.16 84.04 0.85 -18.44 16 22 H 0.06 3.87 7.39 -2.91 -0.02 3.84 16 23 C -0.01 -0.83 5.50 84.93 0.47 -0.36 16 24 N -0.93 -56.32 13.96 21.66 0.30 -56.01 16 25 Si 0.96 38.68 27.74 68.60 1.90 40.58 16 26 H -0.26 -9.82 7.11 99.48 0.71 -9.12 16 27 H -0.28 -10.98 7.11 99.48 0.71 -10.27 16 28 H -0.23 -7.76 6.52 99.48 0.65 -7.11 16 29 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 31 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.10 1.78 6.48 -2.39 -0.02 1.76 16 34 H 0.25 0.12 8.06 -2.91 -0.02 0.09 16 35 H 0.18 1.16 7.74 -2.91 -0.02 1.14 16 36 H 0.41 4.93 6.83 -92.71 -0.63 4.30 16 37 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.06 0.87 7.18 -2.39 -0.02 0.85 16 41 H 0.05 1.26 7.75 -2.39 -0.02 1.24 16 42 H 0.04 0.75 8.14 -2.38 -0.02 0.73 16 43 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.34 10.05 8.43 -89.70 -0.76 9.29 16 45 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 46 H 0.11 2.82 8.14 -2.39 -0.02 2.80 16 47 H 0.39 15.07 5.76 -92.70 -0.53 14.53 16 48 H 0.28 15.35 8.31 -92.70 -0.77 14.58 16 Total: -1.00 -81.90 401.68 0.94 -80.96 By element: Atomic # 1 Polarization: 40.75 SS G_CDS: -0.98 Total: 39.77 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: 6.70 Total: 11.37 kcal Atomic # 7 Polarization: -114.24 SS G_CDS: -6.61 Total: -120.85 kcal Atomic # 8 Polarization: -51.76 SS G_CDS: -0.06 Total: -51.82 kcal Atomic # 14 Polarization: 38.68 SS G_CDS: 1.90 Total: 40.58 kcal Total: -81.90 0.94 -80.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666540771.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.583 kcal (2) G-P(sol) polarization free energy of solvation -81.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds