Wall clock time and date at job start Tue Mar 31 2020 21:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50700 * 109.46954 * 2 1 4 4 O 1.33654 * 125.80396 * 270.31145 * 3 2 1 5 5 C 1.34212 * 110.91249 * 180.12573 * 4 3 2 6 6 C 1.34178 * 109.12070 * 359.60490 * 5 4 3 7 7 C 1.36414 * 125.80215 * 89.99760 * 3 2 1 8 8 C 1.47377 * 127.19309 * 0.07470 * 7 3 2 9 9 O 1.21621 * 119.99617 * 359.97438 * 8 7 3 10 10 N 1.34778 * 120.00384 * 179.97438 * 8 7 3 11 11 C 1.46504 * 119.99924 * 179.97438 * 10 8 7 12 12 C 1.53004 * 109.46840 * 180.02562 * 11 10 8 13 13 H 1.08997 * 109.46994 * 305.00633 * 12 11 10 14 14 C 1.53006 * 109.46722 * 65.00410 * 12 11 10 15 15 C 1.52994 * 109.46877 * 185.00126 * 12 11 10 16 16 N 1.46899 * 109.47034 * 175.00103 * 15 12 11 17 17 C 1.46899 * 111.00358 * 180.02562 * 16 15 12 18 18 C 1.50700 * 109.47273 * 180.02562 * 17 16 15 19 19 O 1.21288 * 120.00417 * 359.97438 * 18 17 16 20 20 N 1.34777 * 119.99789 * 180.02562 * 18 17 16 21 21 C 1.37107 * 119.99776 * 179.97438 * 20 18 17 22 22 H 1.07996 * 119.99845 * 359.97438 * 21 20 18 23 23 C 1.38946 * 119.99638 * 180.02562 * 21 20 18 24 24 N 1.31419 * 119.99871 * 180.02562 * 23 21 20 25 25 Si 1.86803 * 120.00529 * 359.97438 * 23 21 20 26 26 H 1.48494 * 109.47087 * 89.99842 * 25 23 21 27 27 H 1.48494 * 109.47462 * 210.00425 * 25 23 21 28 28 H 1.48504 * 109.46888 * 330.00183 * 25 23 21 29 29 H 1.09003 * 109.47227 * 60.00237 * 1 2 3 30 30 H 1.08995 * 109.46855 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46826 * 299.99720 * 1 2 3 32 32 H 1.09000 * 109.46826 * 240.00280 * 2 1 3 33 33 H 1.08991 * 109.47466 * 120.00104 * 2 1 3 34 34 H 1.08002 * 125.44314 * 179.87817 * 5 4 3 35 35 H 1.08003 * 127.02365 * 180.25162 * 6 5 4 36 36 H 0.96994 * 119.99589 * 0.02562 * 10 8 7 37 37 H 1.08998 * 109.47606 * 300.00498 * 11 10 8 38 38 H 1.09001 * 109.46528 * 60.00950 * 11 10 8 39 39 H 1.08999 * 109.47039 * 59.99835 * 14 12 11 40 40 H 1.08999 * 109.46788 * 179.97438 * 14 12 11 41 41 H 1.08996 * 109.47420 * 300.00003 * 14 12 11 42 42 H 1.09004 * 109.47500 * 295.00364 * 15 12 11 43 43 H 1.08999 * 109.47105 * 55.00582 * 15 12 11 44 44 H 1.00900 * 111.00355 * 303.96315 * 16 15 12 45 45 H 1.09000 * 109.47021 * 300.00186 * 17 16 15 46 46 H 1.08995 * 109.47445 * 59.99844 * 17 16 15 47 47 H 0.97000 * 120.00068 * 0.02562 * 20 18 17 48 48 H 0.96999 * 120.00128 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2874 2.1600 -1.0839 5 6 2.7241 3.3813 -0.7391 6 6 2.7574 3.4745 0.5991 7 6 2.2983 2.1732 1.1064 8 6 2.1560 1.7664 2.5157 9 8 1.7619 0.6487 2.7891 10 7 2.4626 2.6328 3.5016 11 6 2.3206 2.2284 4.9025 12 6 2.7301 3.3885 5.8121 13 1 3.7376 3.7146 5.5537 14 6 1.7539 4.5519 5.6257 15 6 2.7015 2.9275 7.2707 16 7 3.2087 4.0024 8.1340 17 6 3.1964 3.5944 9.5451 18 6 3.7216 4.7203 10.3982 19 8 4.0721 5.7601 9.8815 20 7 3.8028 4.5713 11.7352 21 6 4.2811 5.5954 12.5113 22 1 4.5932 6.5212 12.0511 23 6 4.3653 5.4416 13.8896 24 7 4.8233 6.4234 14.6335 25 14 3.8261 3.8399 14.6855 26 1 4.9821 2.9109 14.7607 27 1 3.3206 4.1131 16.0548 28 1 2.7469 3.2224 13.8735 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 2.9999 4.1656 -1.4284 35 1 3.0596 4.3306 1.1840 36 1 2.7765 3.5242 3.2834 37 1 1.2825 1.9611 5.1002 38 1 2.9610 1.3686 5.0991 39 1 0.7465 4.2257 5.8840 40 1 2.0454 5.3782 6.2740 41 1 1.7742 4.8803 4.5866 42 1 1.6775 2.6855 7.5553 43 1 3.3289 2.0435 7.3847 44 1 4.1330 4.2895 7.8489 45 1 2.1760 3.3568 9.8458 46 1 3.8274 2.7151 9.6746 47 1 3.5235 3.7393 12.1484 48 1 4.8817 6.3162 15.5958 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666540772.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:21 Heat of formation + Delta-G solvation = -95.520660 kcal Electronic energy + Delta-G solvation = -27813.790419 eV Core-core repulsion = 23675.883120 eV Total energy + Delta-G solvation = -4137.907299 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.56346 -40.59419 -40.27652 -38.27542 -36.23421 -35.72387 -34.96030 -34.04149 -33.73001 -32.93920 -29.83153 -28.96100 -27.77895 -26.54883 -25.11675 -24.24015 -23.59598 -21.87122 -21.67891 -21.26511 -20.65292 -20.14423 -18.84459 -17.79337 -17.30021 -17.11112 -16.99574 -16.85295 -16.70625 -16.28095 -15.83331 -15.66429 -15.43445 -15.29074 -15.05323 -14.92584 -14.47043 -14.43278 -14.36665 -13.93647 -13.81665 -13.58857 -13.43882 -13.26174 -13.20807 -13.01674 -12.86773 -12.50346 -12.41276 -12.03382 -11.99661 -11.96906 -11.92551 -11.71635 -11.50757 -11.05933 -10.84769 -10.42649 -10.24389 -10.11464 -9.55071 -9.28805 -8.41062 -6.01971 0.31834 1.12633 1.30978 1.35769 1.44932 1.81691 1.96625 2.22102 2.23427 2.31456 2.76824 3.15636 3.42803 3.55142 3.75179 3.85844 3.87937 4.00491 4.07043 4.14782 4.18693 4.29319 4.43916 4.44960 4.50920 4.55484 4.59814 4.64370 4.72018 4.79549 4.83860 4.94811 4.97637 5.01935 5.07642 5.09236 5.24459 5.29769 5.37500 5.45409 5.52844 5.53157 5.90950 6.03970 6.05477 6.40770 6.52789 6.60250 6.88473 7.19110 7.40409 7.96949 8.76520 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.030639 B = 0.001545 C = 0.001490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.636796 B =18120.440910 C =18789.762867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.053 4.053 3 C 0.069 3.931 4 O -0.182 6.182 5 C -0.031 4.031 6 C -0.199 4.199 7 C -0.268 4.268 8 C 0.584 3.416 9 O -0.575 6.575 10 N -0.710 5.710 11 C 0.133 3.867 12 C -0.088 4.088 13 H 0.082 0.918 14 C -0.136 4.136 15 C 0.068 3.932 16 N -0.682 5.682 17 C 0.062 3.938 18 C 0.449 3.551 19 O -0.613 6.613 20 N -0.592 5.592 21 C -0.329 4.329 22 H 0.055 0.945 23 C -0.015 4.015 24 N -0.934 5.934 25 Si 0.965 3.035 26 H -0.257 1.257 27 H -0.276 1.276 28 H -0.231 1.231 29 H 0.062 0.938 30 H 0.082 0.918 31 H 0.042 0.958 32 H 0.100 0.900 33 H 0.097 0.903 34 H 0.247 0.753 35 H 0.179 0.821 36 H 0.411 0.589 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.051 0.949 40 H 0.053 0.947 41 H 0.060 0.940 42 H 0.082 0.918 43 H 0.045 0.955 44 H 0.345 0.655 45 H 0.112 0.888 46 H 0.077 0.923 47 H 0.390 0.610 48 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.771 -15.015 -31.634 35.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.090 4.090 3 C 0.016 3.984 4 O -0.078 6.078 5 C -0.096 4.096 6 C -0.218 4.218 7 C -0.273 4.273 8 C 0.373 3.627 9 O -0.456 6.456 10 N -0.362 5.362 11 C 0.009 3.991 12 C -0.107 4.107 13 H 0.100 0.900 14 C -0.194 4.194 15 C -0.061 4.061 16 N -0.314 5.314 17 C -0.071 4.071 18 C 0.236 3.764 19 O -0.498 6.498 20 N -0.234 5.234 21 C -0.459 4.459 22 H 0.074 0.926 23 C -0.213 4.213 24 N -0.575 5.575 25 Si 0.785 3.215 26 H -0.182 1.182 27 H -0.201 1.201 28 H -0.155 1.155 29 H 0.081 0.919 30 H 0.101 0.899 31 H 0.061 0.939 32 H 0.119 0.881 33 H 0.116 0.884 34 H 0.263 0.737 35 H 0.196 0.804 36 H 0.248 0.752 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.079 0.921 42 H 0.100 0.900 43 H 0.063 0.937 44 H 0.163 0.837 45 H 0.130 0.870 46 H 0.095 0.905 47 H 0.225 0.775 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.405 -14.769 -31.815 36.069 hybrid contribution 0.982 -0.106 1.229 1.577 sum -7.423 -14.875 -30.586 34.812 Atomic orbital electron populations 1.21650 0.92843 1.03415 1.01658 1.20410 0.97366 0.86030 1.05198 1.23120 0.96987 0.94966 0.83360 1.83790 1.65185 1.24045 1.34814 1.24694 1.02050 0.85855 0.97008 1.23177 1.05912 0.97423 0.95279 1.21271 1.15257 0.97479 0.93252 1.17451 0.76516 0.84120 0.84584 1.90740 1.48597 1.21657 1.84647 1.45697 1.67452 1.17274 1.05740 1.21285 1.01687 0.96898 0.79225 1.21211 1.00908 0.95087 0.93525 0.89994 1.21706 0.98550 0.97829 1.01304 1.21959 1.01215 0.91694 0.91265 1.60024 1.31890 1.38855 1.00635 1.21622 1.03034 0.93755 0.88653 1.21009 0.82488 0.90324 0.82530 1.90539 1.53899 1.32002 1.73349 1.42045 1.59359 1.15575 1.06376 1.19018 1.41039 0.95962 0.89853 0.92647 1.26112 0.96702 1.02590 0.95935 1.69807 1.46459 1.34592 1.06641 0.85366 0.80069 0.77405 0.78696 1.18152 1.20080 1.15465 0.91877 0.89937 0.93920 0.88136 0.88429 0.73719 0.80397 0.75198 0.91600 0.91617 0.92949 0.92778 0.92108 0.89993 0.93676 0.83679 0.86975 0.90506 0.77481 0.91166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.89 71.98 0.71 -1.14 16 2 C -0.05 -0.78 5.94 29.85 0.18 -0.61 16 3 C 0.07 1.19 6.63 25.26 0.17 1.36 16 4 O -0.18 -2.68 10.52 4.48 0.05 -2.64 16 5 C -0.03 -0.30 12.03 66.89 0.80 0.51 16 6 C -0.20 -2.35 10.60 23.65 0.25 -2.10 16 7 C -0.27 -4.85 6.31 -18.99 -0.12 -4.97 16 8 C 0.58 12.37 7.81 86.65 0.68 13.04 16 9 O -0.57 -15.47 14.84 -4.10 -0.06 -15.53 16 10 N -0.71 -11.60 5.28 -466.39 -2.46 -14.06 16 11 C 0.13 2.21 5.06 86.38 0.44 2.65 16 12 C -0.09 -1.44 2.57 -10.79 -0.03 -1.47 16 13 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 14 C -0.14 -2.45 8.95 71.98 0.64 -1.81 16 15 C 0.07 1.29 5.07 86.30 0.44 1.72 16 16 N -0.68 -18.59 5.58 -517.95 -2.89 -21.48 16 17 C 0.06 1.81 6.17 85.56 0.53 2.34 16 18 C 0.45 19.96 7.82 87.66 0.69 20.64 16 19 O -0.61 -33.59 15.78 -3.05 -0.05 -33.64 16 20 N -0.59 -27.72 5.09 -306.99 -1.56 -29.29 16 21 C -0.33 -19.30 10.16 84.04 0.85 -18.44 16 22 H 0.06 3.87 7.39 -2.91 -0.02 3.84 16 23 C -0.01 -0.82 5.50 84.92 0.47 -0.35 16 24 N -0.93 -56.33 13.96 21.66 0.30 -56.02 16 25 Si 0.96 38.67 27.74 68.60 1.90 40.57 16 26 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 27 H -0.28 -11.01 7.11 99.48 0.71 -10.30 16 28 H -0.23 -7.80 6.52 99.48 0.65 -7.15 16 29 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.10 1.78 6.48 -2.39 -0.02 1.76 16 34 H 0.25 0.12 8.06 -2.91 -0.02 0.09 16 35 H 0.18 1.16 7.74 -2.91 -0.02 1.14 16 36 H 0.41 4.93 6.82 -92.71 -0.63 4.29 16 37 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.05 1.26 7.75 -2.39 -0.02 1.24 16 41 H 0.06 0.87 7.18 -2.39 -0.02 0.86 16 42 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 43 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.34 10.04 8.43 -89.69 -0.76 9.28 16 45 H 0.11 2.82 8.14 -2.39 -0.02 2.80 16 46 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 47 H 0.39 15.07 5.76 -92.71 -0.53 14.53 16 48 H 0.28 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -81.89 401.67 0.94 -80.95 By element: Atomic # 1 Polarization: 40.74 SS G_CDS: -0.98 Total: 39.76 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: 6.70 Total: 11.38 kcal Atomic # 7 Polarization: -114.24 SS G_CDS: -6.61 Total: -120.85 kcal Atomic # 8 Polarization: -51.75 SS G_CDS: -0.06 Total: -51.81 kcal Atomic # 14 Polarization: 38.67 SS G_CDS: 1.90 Total: 40.57 kcal Total: -81.89 0.94 -80.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666540772.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.569 kcal (2) G-P(sol) polarization free energy of solvation -81.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds