Wall clock time and date at job start Tue Mar 31 2020 19:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34325 * 126.44261 * 2 1 4 4 N 1.34480 * 107.66847 * 179.72715 * 3 2 1 5 5 C 1.30254 * 108.69739 * 0.42161 * 4 3 2 6 6 C 1.50700 * 125.61592 * 179.83541 * 5 4 3 7 7 O 1.42908 * 109.46841 * 89.69392 * 6 5 4 8 8 C 1.42900 * 113.99870 * 179.97438 * 7 6 5 9 9 C 1.50698 * 109.47018 * 180.02562 * 8 7 6 10 10 O 1.21283 * 119.99842 * 0.02562 * 9 8 7 11 11 N 1.34775 * 120.00002 * 180.02562 * 9 8 7 12 12 C 1.47012 * 125.64945 * 0.02562 * 11 9 8 13 13 C 1.54331 * 107.27486 * 178.92190 * 12 11 9 14 14 C 1.55273 * 103.00311 * 337.88522 * 13 12 11 15 15 H 1.09005 * 110.96188 * 277.33427 * 14 13 12 16 16 C 1.52999 * 111.09886 * 153.44892 * 14 13 12 17 17 H 1.09004 * 109.47292 * 303.81723 * 16 14 13 18 18 C 1.53005 * 109.47044 * 183.82280 * 16 14 13 19 19 N 1.46495 * 109.47184 * 63.82281 * 16 14 13 20 20 C 1.36942 * 119.99892 * 205.00020 * 19 16 14 21 21 H 1.07998 * 120.00123 * 359.97438 * 20 19 16 22 22 C 1.38811 * 120.00065 * 179.97438 * 20 19 16 23 23 N 1.31622 * 120.00064 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00182 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47320 * 60.00195 * 24 22 20 26 26 H 1.48495 * 109.47303 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.46973 * 300.00008 * 24 22 20 28 28 C 1.47426 * 125.64824 * 180.02562 * 11 9 8 29 29 O 1.33966 * 108.76522 * 359.57663 * 5 4 3 30 30 H 1.09005 * 109.47279 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47069 * 299.99420 * 1 2 3 32 32 H 1.09000 * 109.47173 * 60.00139 * 1 2 3 33 33 H 1.07999 * 126.16593 * 359.97438 * 3 2 1 34 34 H 1.09000 * 109.47470 * 329.69947 * 6 5 4 35 35 H 1.08999 * 109.47359 * 209.69209 * 6 5 4 36 36 H 1.08999 * 109.46677 * 60.00769 * 8 7 6 37 37 H 1.08994 * 109.47606 * 300.00785 * 8 7 6 38 38 H 1.09004 * 109.88704 * 298.33656 * 12 11 9 39 39 H 1.08999 * 109.88479 * 59.34983 * 12 11 9 40 40 H 1.08994 * 110.72048 * 96.17239 * 13 12 11 41 41 H 1.08998 * 110.71961 * 219.44520 * 13 12 11 42 42 H 1.08995 * 109.47201 * 65.08278 * 18 16 14 43 43 H 1.09001 * 109.47040 * 185.08622 * 18 16 14 44 44 H 1.09002 * 109.47195 * 305.07832 * 18 16 14 45 45 H 0.96993 * 120.00114 * 24.99366 * 19 16 14 46 46 H 0.96993 * 120.00184 * 180.02562 * 23 22 20 47 47 H 1.09002 * 110.36557 * 322.99066 * 28 11 9 48 48 H 1.09004 * 110.36608 * 85.19935 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3049 1.0806 0.0000 4 7 3.5782 0.6478 0.0061 5 6 3.5765 -0.6547 0.0007 6 6 4.8004 -1.5340 0.0011 7 8 5.1870 -1.8116 1.3486 8 6 6.3436 -2.6431 1.4619 9 6 6.6585 -2.8700 2.9181 10 8 5.9608 -2.3693 3.7745 11 7 7.7153 -3.6293 3.2686 12 6 8.6402 -4.2925 2.3380 13 6 9.7018 -5.0215 3.1885 14 6 9.6451 -4.2638 4.5426 15 1 10.2436 -3.3535 4.5054 16 6 10.0914 -5.1639 5.6965 17 1 9.4777 -6.0646 5.7130 18 6 9.9310 -4.4134 7.0202 19 7 11.4968 -5.5338 5.5120 20 6 11.9809 -6.6856 6.0726 21 1 11.3268 -7.3211 6.6510 22 6 13.3125 -7.0364 5.8973 23 7 14.1097 -6.2622 5.1919 24 14 13.9727 -8.6079 6.6613 25 1 13.2218 -9.7719 6.1263 26 1 15.4129 -8.7525 6.3296 27 1 13.8086 -8.5483 8.1360 28 6 8.1355 -3.9323 4.6489 29 8 2.3075 -1.0840 0.0004 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.9821 2.1112 -0.0004 34 1 5.6149 -1.0232 -0.5125 35 1 4.5764 -2.4689 -0.5125 36 1 7.1902 -2.1557 0.9784 37 1 6.1513 -3.6009 0.9786 38 1 8.0972 -5.0127 1.7259 39 1 9.1193 -3.5503 1.6995 40 1 9.4345 -6.0695 3.3235 41 1 10.6888 -4.9294 2.7353 42 1 8.8742 -4.2174 7.2011 43 1 10.3325 -5.0194 7.8324 44 1 10.4724 -3.4686 6.9701 45 1 12.0844 -4.9629 4.9928 46 1 15.0400 -6.5075 5.0691 47 1 7.9817 -3.0653 5.2912 48 1 7.5846 -4.7908 5.0333 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672216397.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:43 Heat of formation + Delta-G solvation = -39.019751 kcal Electronic energy + Delta-G solvation = -28228.449926 eV Core-core repulsion = 24092.992690 eV Total energy + Delta-G solvation = -4135.457236 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.70587 -40.18492 -38.50896 -37.38260 -35.22939 -35.10694 -33.18071 -32.50965 -30.81660 -30.03130 -29.31238 -28.09173 -26.95775 -25.53143 -24.33596 -22.96171 -22.70467 -21.49978 -21.46358 -19.66705 -19.48369 -17.96572 -17.50242 -17.21285 -17.01231 -16.73460 -16.38959 -15.85758 -15.55262 -15.05661 -14.67524 -14.46554 -14.14620 -13.79602 -13.71294 -13.59364 -13.47080 -13.23934 -12.91241 -12.74518 -12.72574 -12.60757 -12.32559 -12.24114 -12.08580 -11.74305 -11.68050 -11.23586 -10.90763 -10.89185 -10.73694 -10.60786 -10.41827 -10.28117 -10.24552 -9.95561 -9.82051 -9.65052 -9.12579 -8.93055 -8.65971 -6.98690 -5.79034 -3.07493 0.91460 1.99782 2.28441 2.52168 2.69140 3.42124 3.42938 3.47409 3.47671 3.90676 4.28264 4.34911 4.52835 4.55355 4.58272 4.66148 4.74180 4.77429 4.80339 4.90375 4.90690 4.96949 5.10002 5.11074 5.27924 5.43896 5.44699 5.51841 5.64022 5.65246 5.86228 5.88529 5.88745 5.95592 6.04266 6.14305 6.19813 6.35225 6.40585 6.49644 6.57031 6.63443 6.85913 7.09044 7.33320 7.45030 7.67937 8.09267 8.39568 9.51025 10.07974 10.43067 11.43461 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.036845 B = 0.001623 C = 0.001599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.762021 B =17245.060310 C =17508.248196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.039 4.039 3 C -0.045 4.045 4 N -0.457 5.457 5 C 0.187 3.813 6 C 0.161 3.839 7 O -0.358 6.358 8 C 0.051 3.949 9 C 0.528 3.472 10 O -0.523 6.523 11 N -0.616 5.616 12 C 0.094 3.906 13 C -0.115 4.115 14 C -0.102 4.102 15 H 0.081 0.919 16 C 0.185 3.815 17 H 0.049 0.951 18 C -0.168 4.168 19 N -0.722 5.722 20 C -0.238 4.238 21 H 0.069 0.931 22 C -0.012 4.012 23 N -0.933 5.933 24 Si 0.905 3.095 25 H -0.287 1.287 26 H -0.292 1.292 27 H -0.287 1.287 28 C 0.116 3.884 29 O -0.194 6.194 30 H 0.079 0.921 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.186 0.814 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.080 0.920 41 H 0.088 0.912 42 H 0.037 0.963 43 H 0.055 0.945 44 H 0.045 0.955 45 H 0.383 0.617 46 H 0.255 0.745 47 H 0.077 0.923 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.281 10.344 -15.258 29.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.092 4.092 3 C -0.184 4.184 4 N -0.188 5.188 5 C -0.019 4.019 6 C 0.084 3.916 7 O -0.275 6.275 8 C -0.029 4.029 9 C 0.315 3.685 10 O -0.398 6.398 11 N -0.352 5.352 12 C -0.029 4.029 13 C -0.153 4.153 14 C -0.122 4.122 15 H 0.100 0.900 16 C 0.075 3.925 17 H 0.067 0.933 18 C -0.229 4.229 19 N -0.363 5.363 20 C -0.369 4.369 21 H 0.087 0.913 22 C -0.208 4.208 23 N -0.582 5.582 24 Si 0.736 3.264 25 H -0.213 1.213 26 H -0.218 1.218 27 H -0.213 1.213 28 C -0.006 4.006 29 O -0.081 6.081 30 H 0.098 0.902 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.203 0.797 34 H 0.117 0.883 35 H 0.102 0.898 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.099 0.901 41 H 0.107 0.893 42 H 0.056 0.944 43 H 0.075 0.925 44 H 0.064 0.936 45 H 0.217 0.783 46 H 0.065 0.935 47 H 0.096 0.904 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -23.243 10.859 -14.576 29.506 hybrid contribution 0.247 -1.083 0.054 1.112 sum -22.996 9.775 -14.522 28.901 Atomic orbital electron populations 1.20323 0.83708 1.04577 1.04069 1.23590 0.95209 0.84512 1.05928 1.23118 0.87573 1.00582 1.07162 1.70422 1.23329 1.09046 1.15997 1.25500 0.83869 0.89941 1.02615 1.20481 0.89116 0.96483 0.85537 1.88068 1.45679 1.69793 1.23956 1.22235 0.89344 0.95887 0.95423 1.19683 0.80026 0.78593 0.90194 1.90749 1.48538 1.48709 1.51824 1.48481 1.27850 1.49737 1.09093 1.22252 0.91451 0.96293 0.92916 1.22590 0.98342 0.99678 0.94721 1.22703 0.93665 0.99710 0.96123 0.90017 1.20128 0.87939 0.94096 0.90344 0.93260 1.22498 0.98951 1.00866 1.00545 1.42350 1.04676 1.26265 1.62986 1.19179 0.93449 0.98557 1.25689 0.91270 1.24709 0.96422 0.98827 1.00875 1.69642 1.05524 1.38484 1.44501 0.86297 0.77863 0.83276 0.78916 1.21329 1.21756 1.21335 1.22329 0.94965 1.01073 0.82249 1.84396 1.17710 1.36627 1.69318 0.90207 0.89018 0.89147 0.79666 0.88304 0.89825 0.89510 0.89680 0.91482 0.91390 0.90128 0.89328 0.94366 0.92541 0.93553 0.78298 0.93510 0.90415 0.91155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.29 10.43 36.01 0.38 0.08 16 2 C -0.04 -0.34 7.39 -35.69 -0.26 -0.60 16 3 C -0.05 -0.43 11.80 -17.77 -0.21 -0.64 16 4 N -0.46 -5.62 11.29 -11.10 -0.13 -5.74 16 5 C 0.19 2.12 7.97 -12.95 -0.10 2.02 16 6 C 0.16 1.38 6.56 36.01 0.24 1.61 16 7 O -0.36 -4.37 9.86 -55.14 -0.54 -4.91 16 8 C 0.05 0.49 5.61 36.00 0.20 0.69 16 9 C 0.53 7.42 7.93 -10.99 -0.09 7.34 16 10 O -0.52 -9.79 16.75 -14.36 -0.24 -10.03 16 11 N -0.62 -7.95 3.33 -170.51 -0.57 -8.51 16 12 C 0.09 0.97 6.49 -3.07 -0.02 0.95 16 13 C -0.12 -1.54 6.20 -24.83 -0.15 -1.70 16 14 C -0.10 -1.53 2.64 -88.40 -0.23 -1.76 16 15 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 16 C 0.19 3.40 2.40 -67.93 -0.16 3.24 16 17 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 18 C -0.17 -2.96 9.23 37.16 0.34 -2.62 16 19 N -0.72 -16.82 4.88 -53.42 -0.26 -17.08 16 20 C -0.24 -6.29 9.93 -15.06 -0.15 -6.44 16 21 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 22 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 23 N -0.93 -27.16 13.06 55.49 0.72 -26.43 16 24 Si 0.91 21.82 29.55 -169.99 -5.02 16.80 16 25 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 26 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 27 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 28 C 0.12 1.64 5.52 -2.52 -0.01 1.62 16 29 O -0.19 -2.13 10.78 5.36 0.06 -2.08 16 30 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.19 1.16 8.06 -52.49 -0.42 0.73 16 34 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.08 1.15 8.04 -51.93 -0.42 0.73 16 41 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 42 H 0.04 0.57 7.60 -51.93 -0.39 0.18 16 43 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.38 9.52 7.80 -40.82 -0.32 9.20 16 46 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 47 H 0.08 1.17 8.04 -51.93 -0.42 0.75 16 48 H 0.07 0.99 8.03 -51.93 -0.42 0.57 16 LS Contribution 404.04 15.07 6.09 6.09 Total: -1.00 -35.91 404.04 -8.08 -43.99 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -7.85 Total: 4.54 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: -0.34 Total: 3.37 kcal Atomic # 7 Polarization: -57.53 SS G_CDS: -0.23 Total: -57.76 kcal Atomic # 8 Polarization: -16.29 SS G_CDS: -0.73 Total: -17.02 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -35.91 -8.08 -43.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672216397.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.966 kcal (2) G-P(sol) polarization free energy of solvation -35.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds