Wall clock time and date at job start Tue Mar 31 2020 19:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34325 * 126.44261 * 2 1 4 4 N 1.34480 * 107.66847 * 179.72715 * 3 2 1 5 5 C 1.30254 * 108.69739 * 0.42161 * 4 3 2 6 6 C 1.50700 * 125.61592 * 179.83541 * 5 4 3 7 7 O 1.42908 * 109.46841 * 89.69392 * 6 5 4 8 8 C 1.42900 * 113.99870 * 179.97438 * 7 6 5 9 9 C 1.50698 * 109.47018 * 180.02562 * 8 7 6 10 10 O 1.21283 * 119.99842 * 0.02562 * 9 8 7 11 11 N 1.34775 * 120.00002 * 180.02562 * 9 8 7 12 12 C 1.47012 * 125.64945 * 0.02562 * 11 9 8 13 13 C 1.54331 * 107.27486 * 178.92190 * 12 11 9 14 14 C 1.55273 * 103.00311 * 337.88522 * 13 12 11 15 15 H 1.09005 * 110.96188 * 277.33427 * 14 13 12 16 16 C 1.52999 * 111.09886 * 153.44892 * 14 13 12 17 17 H 1.09004 * 109.47292 * 303.81723 * 16 14 13 18 18 C 1.53005 * 109.47044 * 183.82280 * 16 14 13 19 19 N 1.46495 * 109.47184 * 63.82281 * 16 14 13 20 20 C 1.36942 * 119.99892 * 205.00020 * 19 16 14 21 21 H 1.07998 * 120.00123 * 359.97438 * 20 19 16 22 22 C 1.38811 * 120.00065 * 179.97438 * 20 19 16 23 23 N 1.31622 * 120.00064 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00182 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47320 * 60.00195 * 24 22 20 26 26 H 1.48495 * 109.47303 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.46973 * 300.00008 * 24 22 20 28 28 C 1.47426 * 125.64824 * 180.02562 * 11 9 8 29 29 O 1.33966 * 108.76522 * 359.57663 * 5 4 3 30 30 H 1.09005 * 109.47279 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47069 * 299.99420 * 1 2 3 32 32 H 1.09000 * 109.47173 * 60.00139 * 1 2 3 33 33 H 1.07999 * 126.16593 * 359.97438 * 3 2 1 34 34 H 1.09000 * 109.47470 * 329.69947 * 6 5 4 35 35 H 1.08999 * 109.47359 * 209.69209 * 6 5 4 36 36 H 1.08999 * 109.46677 * 60.00769 * 8 7 6 37 37 H 1.08994 * 109.47606 * 300.00785 * 8 7 6 38 38 H 1.09004 * 109.88704 * 298.33656 * 12 11 9 39 39 H 1.08999 * 109.88479 * 59.34983 * 12 11 9 40 40 H 1.08994 * 110.72048 * 96.17239 * 13 12 11 41 41 H 1.08998 * 110.71961 * 219.44520 * 13 12 11 42 42 H 1.08995 * 109.47201 * 65.08278 * 18 16 14 43 43 H 1.09001 * 109.47040 * 185.08622 * 18 16 14 44 44 H 1.09002 * 109.47195 * 305.07832 * 18 16 14 45 45 H 0.96993 * 120.00114 * 24.99366 * 19 16 14 46 46 H 0.96993 * 120.00184 * 180.02562 * 23 22 20 47 47 H 1.09002 * 110.36557 * 322.99066 * 28 11 9 48 48 H 1.09004 * 110.36608 * 85.19935 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3049 1.0806 0.0000 4 7 3.5782 0.6478 0.0061 5 6 3.5765 -0.6547 0.0007 6 6 4.8004 -1.5340 0.0011 7 8 5.1870 -1.8116 1.3486 8 6 6.3436 -2.6431 1.4619 9 6 6.6585 -2.8700 2.9181 10 8 5.9608 -2.3693 3.7745 11 7 7.7153 -3.6293 3.2686 12 6 8.6402 -4.2925 2.3380 13 6 9.7018 -5.0215 3.1885 14 6 9.6451 -4.2638 4.5426 15 1 10.2436 -3.3535 4.5054 16 6 10.0914 -5.1639 5.6965 17 1 9.4777 -6.0646 5.7130 18 6 9.9310 -4.4134 7.0202 19 7 11.4968 -5.5338 5.5120 20 6 11.9809 -6.6856 6.0726 21 1 11.3268 -7.3211 6.6510 22 6 13.3125 -7.0364 5.8973 23 7 14.1097 -6.2622 5.1919 24 14 13.9727 -8.6079 6.6613 25 1 13.2218 -9.7719 6.1263 26 1 15.4129 -8.7525 6.3296 27 1 13.8086 -8.5483 8.1360 28 6 8.1355 -3.9323 4.6489 29 8 2.3075 -1.0840 0.0004 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.9821 2.1112 -0.0004 34 1 5.6149 -1.0232 -0.5125 35 1 4.5764 -2.4689 -0.5125 36 1 7.1902 -2.1557 0.9784 37 1 6.1513 -3.6009 0.9786 38 1 8.0972 -5.0127 1.7259 39 1 9.1193 -3.5503 1.6995 40 1 9.4345 -6.0695 3.3235 41 1 10.6888 -4.9294 2.7353 42 1 8.8742 -4.2174 7.2011 43 1 10.3325 -5.0194 7.8324 44 1 10.4724 -3.4686 6.9701 45 1 12.0844 -4.9629 4.9928 46 1 15.0400 -6.5075 5.0691 47 1 7.9817 -3.0653 5.2912 48 1 7.5846 -4.7908 5.0333 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672216397.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:43 Heat of formation + Delta-G solvation = -65.328647 kcal Electronic energy + Delta-G solvation = -28229.590765 eV Core-core repulsion = 24092.992690 eV Total energy + Delta-G solvation = -4136.598075 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.40838 -41.23440 -39.46449 -38.45163 -36.76680 -35.85615 -34.26817 -33.72475 -32.13950 -30.86094 -30.59985 -29.23714 -27.96497 -26.24242 -25.96396 -24.25820 -23.39684 -22.77871 -22.18332 -21.08410 -20.45848 -19.15057 -18.72345 -18.21238 -17.90213 -17.64879 -17.21651 -16.96453 -16.45006 -16.33593 -15.77183 -15.45947 -15.31828 -15.13564 -14.82290 -14.62852 -14.28482 -14.04025 -13.90695 -13.87723 -13.75841 -13.47533 -13.30997 -13.24170 -13.10878 -12.99092 -12.86054 -12.74015 -12.46362 -12.29342 -12.20927 -11.95561 -11.65565 -11.63399 -11.53223 -11.36889 -10.96929 -10.92121 -10.87770 -9.77188 -9.70366 -8.95443 -7.89017 -5.15824 0.22226 1.31251 1.50534 1.50926 1.52184 1.57983 1.63010 1.80651 2.59834 2.75422 3.18557 3.43102 3.46958 3.70100 3.71043 3.77226 3.87441 3.99725 4.06691 4.15931 4.20498 4.23283 4.27490 4.35877 4.41488 4.46664 4.53544 4.61509 4.62261 4.67478 4.70380 4.80063 4.90951 4.98440 5.00095 5.07394 5.14015 5.14541 5.24352 5.25313 5.35595 5.40409 5.56778 5.61879 5.81982 6.33054 6.46227 6.61939 7.06747 7.40392 8.16285 8.40339 9.33900 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.036845 B = 0.001623 C = 0.001599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.762021 B =17245.060310 C =17508.248196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.039 4.039 3 C -0.068 4.068 4 N -0.491 5.491 5 C 0.165 3.835 6 C 0.160 3.840 7 O -0.398 6.398 8 C 0.056 3.944 9 C 0.520 3.480 10 O -0.582 6.582 11 N -0.613 5.613 12 C 0.099 3.901 13 C -0.113 4.113 14 C -0.094 4.094 15 H 0.076 0.924 16 C 0.182 3.818 17 H 0.048 0.952 18 C -0.161 4.161 19 N -0.729 5.729 20 C -0.234 4.234 21 H 0.073 0.927 22 C -0.072 4.072 23 N -0.967 5.967 24 Si 0.965 3.035 25 H -0.278 1.278 26 H -0.298 1.298 27 H -0.284 1.284 28 C 0.120 3.880 29 O -0.209 6.209 30 H 0.083 0.917 31 H 0.106 0.894 32 H 0.114 0.886 33 H 0.210 0.790 34 H 0.119 0.881 35 H 0.116 0.884 36 H 0.119 0.881 37 H 0.123 0.877 38 H 0.099 0.901 39 H 0.094 0.906 40 H 0.071 0.929 41 H 0.079 0.921 42 H 0.063 0.937 43 H 0.035 0.965 44 H 0.042 0.958 45 H 0.374 0.626 46 H 0.249 0.751 47 H 0.065 0.935 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.846 9.917 -16.962 31.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.092 4.092 3 C -0.206 4.206 4 N -0.222 5.222 5 C -0.041 4.041 6 C 0.083 3.917 7 O -0.316 6.316 8 C -0.023 4.023 9 C 0.310 3.690 10 O -0.462 6.462 11 N -0.348 5.348 12 C -0.022 4.022 13 C -0.151 4.151 14 C -0.114 4.114 15 H 0.094 0.906 16 C 0.073 3.927 17 H 0.066 0.934 18 C -0.221 4.221 19 N -0.369 5.369 20 C -0.366 4.366 21 H 0.090 0.910 22 C -0.264 4.264 23 N -0.618 5.618 24 Si 0.795 3.205 25 H -0.204 1.204 26 H -0.224 1.224 27 H -0.210 1.210 28 C -0.003 4.003 29 O -0.096 6.096 30 H 0.102 0.898 31 H 0.124 0.876 32 H 0.132 0.868 33 H 0.226 0.774 34 H 0.137 0.863 35 H 0.134 0.866 36 H 0.137 0.863 37 H 0.141 0.859 38 H 0.117 0.883 39 H 0.112 0.888 40 H 0.090 0.910 41 H 0.097 0.903 42 H 0.082 0.918 43 H 0.055 0.945 44 H 0.061 0.939 45 H 0.206 0.794 46 H 0.058 0.942 47 H 0.084 0.916 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -24.838 10.416 -16.294 31.479 hybrid contribution 0.628 -0.900 0.620 1.260 sum -24.210 9.516 -15.673 30.370 Atomic orbital electron populations 1.20562 0.80615 1.05426 1.05879 1.24439 0.96867 0.83788 1.04092 1.23609 0.87047 1.02094 1.07887 1.70390 1.24925 1.09963 1.16928 1.26141 0.84734 0.90237 1.02965 1.20813 0.88721 0.97845 0.84282 1.88000 1.46725 1.70599 1.26298 1.22370 0.89899 0.97874 0.92144 1.20575 0.79151 0.77406 0.91864 1.90720 1.50537 1.51067 1.53835 1.48527 1.27970 1.49464 1.08839 1.22375 0.90450 0.97270 0.92101 1.22523 0.99104 0.99352 0.94169 1.22471 0.94131 0.98897 0.95855 0.90578 1.20292 0.85411 0.94841 0.92109 0.93442 1.22380 1.00464 1.00038 0.99208 1.42478 1.06476 1.25372 1.62574 1.19527 0.93512 0.99100 1.24467 0.90952 1.25409 0.96963 1.01802 1.02227 1.69786 1.05360 1.40168 1.46445 0.85339 0.76746 0.80323 0.78111 1.20428 1.22450 1.21027 1.22140 0.94073 1.00588 0.83461 1.84401 1.18067 1.37621 1.69518 0.89812 0.87566 0.86756 0.77368 0.86299 0.86638 0.86346 0.85899 0.88250 0.88756 0.91017 0.90254 0.91797 0.94538 0.93898 0.79419 0.94220 0.91635 0.91046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.43 10.43 71.24 0.74 0.31 16 2 C -0.04 -0.64 7.39 24.79 0.18 -0.46 16 3 C -0.07 -1.26 11.80 83.39 0.98 -0.27 16 4 N -0.49 -11.99 11.29 -303.83 -3.43 -15.42 16 5 C 0.17 3.65 7.97 88.34 0.70 4.35 16 6 C 0.16 2.41 6.56 71.24 0.47 2.88 16 7 O -0.40 -9.08 9.86 -129.94 -1.28 -10.36 16 8 C 0.06 0.90 5.61 71.24 0.40 1.30 16 9 C 0.52 13.79 7.93 87.66 0.69 14.48 16 10 O -0.58 -21.92 16.75 16.00 0.27 -21.65 16 11 N -0.61 -14.54 3.33 -811.76 -2.70 -17.24 16 12 C 0.10 1.73 6.49 86.73 0.56 2.29 16 13 C -0.11 -2.86 6.20 31.83 0.20 -2.66 16 14 C -0.09 -2.74 2.64 -9.35 -0.02 -2.76 16 15 H 0.08 2.34 8.14 -2.38 -0.02 2.32 16 16 C 0.18 6.65 2.40 44.99 0.11 6.76 16 17 H 0.05 1.76 8.08 -2.39 -0.02 1.74 16 18 C -0.16 -5.62 9.23 71.98 0.66 -4.96 16 19 N -0.73 -34.19 4.88 -322.94 -1.58 -35.77 16 20 C -0.23 -12.40 9.93 84.03 0.83 -11.57 16 21 H 0.07 3.72 7.83 -2.91 -0.02 3.70 16 22 C -0.07 -3.97 5.50 84.86 0.47 -3.50 16 23 N -0.97 -57.02 13.06 21.65 0.28 -56.74 16 24 Si 0.96 45.02 29.55 68.60 2.03 47.05 16 25 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 26 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 27 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 28 C 0.12 3.29 5.52 86.86 0.48 3.77 16 29 O -0.21 -4.49 10.78 -3.73 -0.04 -4.53 16 30 H 0.08 0.49 8.14 -2.38 -0.02 0.47 16 31 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.11 0.20 8.14 -2.39 -0.02 0.18 16 33 H 0.21 2.43 8.06 -2.91 -0.02 2.41 16 34 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.10 1.18 8.14 -2.38 -0.02 1.16 16 39 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.07 1.94 8.04 -2.39 -0.02 1.92 16 41 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 42 H 0.06 1.88 7.60 -2.39 -0.02 1.87 16 43 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 45 H 0.37 18.85 7.80 -92.71 -0.72 18.13 16 46 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 47 H 0.07 1.96 8.04 -2.39 -0.02 1.94 16 48 H 0.07 1.94 8.03 -2.39 -0.02 1.92 16 Total: -1.00 -81.14 404.04 1.25 -79.89 By element: Atomic # 1 Polarization: 24.57 SS G_CDS: 0.23 Total: 24.80 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: 7.46 Total: 9.96 kcal Atomic # 7 Polarization: -117.73 SS G_CDS: -7.43 Total: -125.16 kcal Atomic # 8 Polarization: -35.48 SS G_CDS: -1.05 Total: -36.53 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -81.14 1.25 -79.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672216397.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.561 kcal (2) G-P(sol) polarization free energy of solvation -81.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds