Wall clock time and date at job start Tue Mar 31 2020 21:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50693 * 109.47347 * 2 1 4 4 O 1.33655 * 125.80195 * 270.33617 * 3 2 1 5 5 C 1.34213 * 110.91275 * 180.15855 * 4 3 2 6 6 C 1.34178 * 109.12071 * 359.54836 * 5 4 3 7 7 C 1.36414 * 125.80490 * 89.99874 * 3 2 1 8 8 C 1.47377 * 127.19285 * 0.05793 * 7 3 2 9 9 O 1.21617 * 120.00029 * 359.97438 * 8 7 3 10 10 N 1.34779 * 120.00359 * 179.97438 * 8 7 3 11 11 C 1.46495 * 120.00105 * 179.97438 * 10 8 7 12 12 H 1.08999 * 109.47145 * 35.00078 * 11 10 8 13 13 C 1.53004 * 109.47556 * 275.00284 * 11 10 8 14 14 C 1.52995 * 109.47100 * 155.00238 * 11 10 8 15 15 H 1.09008 * 109.47160 * 294.99736 * 14 11 10 16 16 C 1.52998 * 109.47549 * 54.99984 * 14 11 10 17 17 N 1.46907 * 109.47276 * 175.00074 * 14 11 10 18 18 C 1.46902 * 110.99709 * 154.99683 * 17 14 11 19 19 C 1.50706 * 109.46617 * 180.02562 * 18 17 14 20 20 O 1.21288 * 120.00158 * 359.97438 * 19 18 17 21 21 N 1.34773 * 119.99660 * 180.02562 * 19 18 17 22 22 C 1.37104 * 119.99560 * 179.97438 * 21 19 18 23 23 H 1.07995 * 120.00567 * 359.97438 * 22 21 19 24 24 C 1.38962 * 119.99586 * 179.97438 * 22 21 19 25 25 N 1.31407 * 119.99877 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 119.99582 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47082 * 59.99938 * 26 24 22 28 28 H 1.48501 * 109.46652 * 179.97438 * 26 24 22 29 29 H 1.48503 * 109.47304 * 299.99703 * 26 24 22 30 30 H 1.09004 * 109.47084 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46974 * 300.00085 * 1 2 3 32 32 H 1.08999 * 109.47308 * 59.99840 * 1 2 3 33 33 H 1.08993 * 109.47162 * 239.99471 * 2 1 3 34 34 H 1.09003 * 109.47357 * 119.99653 * 2 1 3 35 35 H 1.08002 * 125.44315 * 179.81711 * 5 4 3 36 36 H 1.08003 * 127.02361 * 180.26703 * 6 5 4 37 37 H 0.96994 * 119.99622 * 0.02562 * 10 8 7 38 38 H 1.08999 * 109.46725 * 300.00051 * 13 11 10 39 39 H 1.09000 * 109.46945 * 59.99420 * 13 11 10 40 40 H 1.08998 * 109.47287 * 180.02562 * 13 11 10 41 41 H 1.09003 * 109.47069 * 300.00691 * 16 14 11 42 42 H 1.09001 * 109.46528 * 60.00037 * 16 14 11 43 43 H 1.09002 * 109.47558 * 180.02562 * 16 14 11 44 44 H 1.00893 * 111.00027 * 278.94983 * 17 14 11 45 45 H 1.08997 * 109.47482 * 300.00052 * 18 17 14 46 46 H 1.08999 * 109.46806 * 60.00566 * 18 17 14 47 47 H 0.97001 * 120.00505 * 359.97438 * 21 19 18 48 48 H 0.97000 * 119.99816 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 8 2.2870 2.1600 -1.0840 5 6 2.7246 3.3810 -0.7391 6 6 2.7578 3.4743 0.5990 7 6 2.2984 2.1731 1.1063 8 6 2.1558 1.7665 2.5157 9 8 1.7614 0.6490 2.7892 10 7 2.4625 2.6329 3.5015 11 6 2.3202 2.2288 4.9024 12 1 2.5723 1.1731 5.0034 13 6 0.8758 2.4536 5.3540 14 6 3.2622 3.0635 5.7722 15 1 4.2957 2.8364 5.5101 16 6 2.9912 4.5506 5.5357 17 7 3.0344 2.7433 7.1877 18 6 4.2321 3.0247 7.9904 19 6 3.9611 2.6841 9.4333 20 8 2.8769 2.2502 9.7606 21 7 4.9233 2.8627 10.3599 22 6 4.6766 2.5534 11.6726 23 1 3.7112 2.1670 11.9642 24 6 5.6688 2.7370 12.6280 25 7 6.8437 3.2067 12.2731 26 14 5.3329 2.3148 14.4164 27 1 4.9887 0.8746 14.5288 28 1 6.5438 2.5987 15.2278 29 1 4.1994 3.1350 14.9142 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5139 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 3.0013 4.1650 -1.4286 36 1 3.0603 4.3304 1.1839 37 1 2.7767 3.5242 3.2833 38 1 0.6237 3.5092 5.2530 39 1 0.2046 1.8589 4.7343 40 1 0.7701 2.1533 6.3965 41 1 3.1602 4.7883 4.4854 42 1 1.9578 4.7777 5.7979 43 1 3.6626 5.1454 6.1551 44 1 2.2335 3.2409 7.5466 45 1 5.0640 2.4225 7.6254 46 1 4.4849 4.0818 7.9075 47 1 5.7903 3.2101 10.0982 48 1 7.5362 3.3352 12.9401 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674660760.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:52 Heat of formation + Delta-G solvation = -66.145535 kcal Electronic energy + Delta-G solvation = -28692.471607 eV Core-core repulsion = 24555.838109 eV Total energy + Delta-G solvation = -4136.633498 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.92753 -39.88725 -38.44804 -37.30636 -34.65488 -34.19337 -33.80979 -33.10530 -31.28037 -30.74850 -29.24847 -28.92458 -26.40817 -25.16964 -24.32374 -23.65333 -23.01878 -21.38623 -20.14145 -19.67287 -19.27645 -18.25746 -17.89622 -16.64199 -16.38249 -16.10020 -15.80273 -15.54737 -15.12650 -14.91490 -14.65428 -14.51607 -14.48570 -14.00341 -13.82618 -13.79353 -13.35584 -13.28656 -13.00116 -12.93298 -12.60105 -12.34676 -12.22826 -12.16745 -11.93201 -11.82252 -11.54260 -11.40765 -11.31656 -11.02543 -10.93649 -10.82300 -10.43893 -10.21065 -10.16382 -10.04607 -9.49644 -9.21001 -8.90283 -8.47220 -8.07756 -7.95762 -6.41425 -3.82169 1.08193 1.69613 2.43961 3.04353 3.19841 3.20680 3.26281 3.30960 3.91021 4.10695 4.12058 4.35501 4.48646 4.49243 4.73971 4.77253 4.81024 4.93988 5.04338 5.09033 5.15402 5.18680 5.26496 5.27795 5.37643 5.41245 5.55753 5.62260 5.64311 5.68025 5.75820 5.79649 5.85073 5.89970 5.94632 5.97701 6.00416 6.13358 6.26169 6.37950 6.48378 6.67965 7.16343 7.40747 7.55454 7.62644 8.06388 8.12511 8.61450 9.18121 9.54457 10.05905 10.76226 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.027087 B = 0.001804 C = 0.001756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.465716 B =15515.863139 C =15939.579873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.053 4.053 3 C 0.081 3.919 4 O -0.176 6.176 5 C -0.039 4.039 6 C -0.190 4.190 7 C -0.244 4.244 8 C 0.589 3.411 9 O -0.537 6.537 10 N -0.718 5.718 11 C 0.155 3.845 12 H 0.097 0.903 13 C -0.163 4.163 14 C 0.078 3.922 15 H 0.082 0.918 16 C -0.189 4.189 17 N -0.658 5.658 18 C 0.051 3.949 19 C 0.440 3.560 20 O -0.582 6.582 21 N -0.563 5.563 22 C -0.299 4.299 23 H 0.103 0.897 24 C 0.022 3.978 25 N -0.902 5.902 26 Si 0.931 3.069 27 H -0.273 1.273 28 H -0.285 1.285 29 H -0.274 1.274 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.081 0.919 34 H 0.116 0.884 35 H 0.207 0.793 36 H 0.156 0.844 37 H 0.396 0.604 38 H 0.051 0.949 39 H 0.056 0.944 40 H 0.081 0.919 41 H 0.055 0.945 42 H 0.065 0.935 43 H 0.062 0.938 44 H 0.353 0.647 45 H 0.086 0.914 46 H 0.044 0.956 47 H 0.392 0.608 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.458 3.211 -27.836 28.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.090 4.090 3 C 0.028 3.972 4 O -0.072 6.072 5 C -0.105 4.105 6 C -0.209 4.209 7 C -0.248 4.248 8 C 0.377 3.623 9 O -0.416 6.416 10 N -0.371 5.371 11 C 0.050 3.950 12 H 0.115 0.885 13 C -0.221 4.221 14 C -0.034 4.034 15 H 0.100 0.900 16 C -0.248 4.248 17 N -0.290 5.290 18 C -0.081 4.081 19 C 0.226 3.774 20 O -0.466 6.466 21 N -0.200 5.200 22 C -0.429 4.429 23 H 0.120 0.880 24 C -0.180 4.180 25 N -0.544 5.544 26 Si 0.758 3.242 27 H -0.199 1.199 28 H -0.210 1.210 29 H -0.199 1.199 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.100 0.900 34 H 0.134 0.866 35 H 0.224 0.776 36 H 0.173 0.827 37 H 0.232 0.768 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.100 0.900 41 H 0.074 0.926 42 H 0.084 0.916 43 H 0.081 0.919 44 H 0.174 0.826 45 H 0.104 0.896 46 H 0.062 0.938 47 H 0.225 0.775 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.183 1.398 -27.613 28.566 hybrid contribution 0.863 1.938 0.771 2.257 sum -6.320 3.336 -26.843 27.778 Atomic orbital electron populations 1.21688 0.93254 1.02775 1.02342 1.20420 0.97060 0.86324 1.05210 1.22904 0.96831 0.94382 0.83059 1.83775 1.65139 1.23197 1.35079 1.23857 1.03983 0.86252 0.96402 1.22864 1.05670 0.97784 0.94596 1.21205 1.13805 0.95752 0.94039 1.17162 0.77043 0.84464 0.83610 1.90775 1.46588 1.20260 1.83929 1.45998 1.68093 1.16765 1.06216 1.20892 0.95526 1.00446 0.78088 0.88452 1.22175 0.95663 1.01239 1.03003 1.21724 0.99337 0.92510 0.89781 0.89954 1.22618 1.02829 0.97775 1.01563 1.60021 1.06137 1.63357 0.99532 1.21707 0.93555 0.99255 0.93618 1.19792 0.86077 0.85136 0.86408 1.90526 1.24725 1.50051 1.81346 1.41854 1.13721 1.57178 1.07265 1.19659 1.00480 1.40353 0.82412 0.87954 1.25267 0.94934 0.97208 1.00562 1.69602 1.03873 1.45432 1.35447 0.85911 0.77548 0.79183 0.81539 1.19864 1.21001 1.19929 0.91238 0.91798 0.92728 0.90040 0.86634 0.77607 0.82676 0.76826 0.92952 0.92533 0.89982 0.92618 0.91589 0.91940 0.82646 0.89558 0.93774 0.77477 0.91836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 9.89 37.16 0.37 -0.76 16 2 C -0.05 -0.46 5.94 -27.89 -0.17 -0.62 16 3 C 0.08 0.80 6.63 -34.97 -0.23 0.57 16 4 O -0.18 -1.55 10.52 7.65 0.08 -1.47 16 5 C -0.04 -0.26 12.03 29.30 0.35 0.10 16 6 C -0.19 -1.42 10.60 -37.45 -0.40 -1.81 16 7 C -0.24 -2.51 6.31 -103.28 -0.65 -3.16 16 8 C 0.59 7.15 7.78 -12.54 -0.10 7.05 16 9 O -0.54 -8.03 14.51 5.26 0.08 -7.96 16 10 N -0.72 -7.37 4.99 -54.90 -0.27 -7.64 16 11 C 0.15 1.86 2.63 -67.93 -0.18 1.68 16 12 H 0.10 1.43 7.58 -51.93 -0.39 1.04 16 13 C -0.16 -1.95 8.87 37.16 0.33 -1.63 16 14 C 0.08 0.90 2.64 -67.71 -0.18 0.73 16 15 H 0.08 0.95 7.80 -51.92 -0.40 0.54 16 16 C -0.19 -1.76 8.68 37.16 0.32 -1.44 16 17 N -0.66 -10.13 5.23 -107.98 -0.56 -10.70 16 18 C 0.05 0.88 5.97 -4.97 -0.03 0.85 16 19 C 0.44 10.30 7.82 -10.98 -0.09 10.21 16 20 O -0.58 -15.70 15.78 5.55 0.09 -15.62 16 21 N -0.56 -14.21 5.29 -10.96 -0.06 -14.27 16 22 C -0.30 -8.35 9.68 -14.93 -0.14 -8.50 16 23 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 24 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 25 N -0.90 -24.51 13.05 55.50 0.72 -23.78 16 26 Si 0.93 21.10 29.55 -169.99 -5.02 16.08 16 27 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 28 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 29 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.12 1.17 6.48 -51.93 -0.34 0.83 16 35 H 0.21 0.51 8.06 -52.49 -0.42 0.09 16 36 H 0.16 0.77 7.74 -52.48 -0.41 0.36 16 37 H 0.40 3.11 5.75 -40.82 -0.23 2.88 16 38 H 0.05 0.55 6.56 -51.93 -0.34 0.21 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.08 1.10 7.13 -51.93 -0.37 0.73 16 41 H 0.05 0.39 6.29 -51.93 -0.33 0.07 16 42 H 0.07 0.62 6.55 -51.93 -0.34 0.28 16 43 H 0.06 0.61 7.45 -51.93 -0.39 0.22 16 44 H 0.35 5.61 7.39 -39.30 -0.29 5.32 16 45 H 0.09 1.38 8.05 -51.93 -0.42 0.96 16 46 H 0.04 0.67 7.44 -51.93 -0.39 0.28 16 47 H 0.39 9.43 7.90 -40.82 -0.32 9.11 16 48 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 395.54 15.07 5.96 5.96 Total: -1.00 -33.39 395.54 -6.88 -40.27 By element: Atomic # 1 Polarization: 22.39 SS G_CDS: -7.00 Total: 15.38 kcal Atomic # 6 Polarization: 4.63 SS G_CDS: -0.89 Total: 3.75 kcal Atomic # 7 Polarization: -56.23 SS G_CDS: -0.17 Total: -56.40 kcal Atomic # 8 Polarization: -25.29 SS G_CDS: 0.24 Total: -25.04 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.39 -6.88 -40.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674660760.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.875 kcal (2) G-P(sol) polarization free energy of solvation -33.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds