Wall clock time and date at job start Tue Mar 31 2020 21:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50693 * 109.47347 * 2 1 4 4 O 1.33655 * 125.80195 * 270.33617 * 3 2 1 5 5 C 1.34213 * 110.91275 * 180.15855 * 4 3 2 6 6 C 1.34178 * 109.12071 * 359.54836 * 5 4 3 7 7 C 1.36414 * 125.80490 * 89.99874 * 3 2 1 8 8 C 1.47377 * 127.19285 * 0.05793 * 7 3 2 9 9 O 1.21617 * 120.00029 * 359.97438 * 8 7 3 10 10 N 1.34779 * 120.00359 * 179.97438 * 8 7 3 11 11 C 1.46495 * 120.00105 * 179.97438 * 10 8 7 12 12 H 1.08999 * 109.47145 * 35.00078 * 11 10 8 13 13 C 1.53004 * 109.47556 * 275.00284 * 11 10 8 14 14 C 1.52995 * 109.47100 * 155.00238 * 11 10 8 15 15 H 1.09008 * 109.47160 * 294.99736 * 14 11 10 16 16 C 1.52998 * 109.47549 * 54.99984 * 14 11 10 17 17 N 1.46907 * 109.47276 * 175.00074 * 14 11 10 18 18 C 1.46902 * 110.99709 * 154.99683 * 17 14 11 19 19 C 1.50706 * 109.46617 * 180.02562 * 18 17 14 20 20 O 1.21288 * 120.00158 * 359.97438 * 19 18 17 21 21 N 1.34773 * 119.99660 * 180.02562 * 19 18 17 22 22 C 1.37104 * 119.99560 * 179.97438 * 21 19 18 23 23 H 1.07995 * 120.00567 * 359.97438 * 22 21 19 24 24 C 1.38962 * 119.99586 * 179.97438 * 22 21 19 25 25 N 1.31407 * 119.99877 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 119.99582 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47082 * 59.99938 * 26 24 22 28 28 H 1.48501 * 109.46652 * 179.97438 * 26 24 22 29 29 H 1.48503 * 109.47304 * 299.99703 * 26 24 22 30 30 H 1.09004 * 109.47084 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46974 * 300.00085 * 1 2 3 32 32 H 1.08999 * 109.47308 * 59.99840 * 1 2 3 33 33 H 1.08993 * 109.47162 * 239.99471 * 2 1 3 34 34 H 1.09003 * 109.47357 * 119.99653 * 2 1 3 35 35 H 1.08002 * 125.44315 * 179.81711 * 5 4 3 36 36 H 1.08003 * 127.02361 * 180.26703 * 6 5 4 37 37 H 0.96994 * 119.99622 * 0.02562 * 10 8 7 38 38 H 1.08999 * 109.46725 * 300.00051 * 13 11 10 39 39 H 1.09000 * 109.46945 * 59.99420 * 13 11 10 40 40 H 1.08998 * 109.47287 * 180.02562 * 13 11 10 41 41 H 1.09003 * 109.47069 * 300.00691 * 16 14 11 42 42 H 1.09001 * 109.46528 * 60.00037 * 16 14 11 43 43 H 1.09002 * 109.47558 * 180.02562 * 16 14 11 44 44 H 1.00893 * 111.00027 * 278.94983 * 17 14 11 45 45 H 1.08997 * 109.47482 * 300.00052 * 18 17 14 46 46 H 1.08999 * 109.46806 * 60.00566 * 18 17 14 47 47 H 0.97001 * 120.00505 * 359.97438 * 21 19 18 48 48 H 0.97000 * 119.99816 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 8 2.2870 2.1600 -1.0840 5 6 2.7246 3.3810 -0.7391 6 6 2.7578 3.4743 0.5990 7 6 2.2984 2.1731 1.1063 8 6 2.1558 1.7665 2.5157 9 8 1.7614 0.6490 2.7892 10 7 2.4625 2.6329 3.5015 11 6 2.3202 2.2288 4.9024 12 1 2.5723 1.1731 5.0034 13 6 0.8758 2.4536 5.3540 14 6 3.2622 3.0635 5.7722 15 1 4.2957 2.8364 5.5101 16 6 2.9912 4.5506 5.5357 17 7 3.0344 2.7433 7.1877 18 6 4.2321 3.0247 7.9904 19 6 3.9611 2.6841 9.4333 20 8 2.8769 2.2502 9.7606 21 7 4.9233 2.8627 10.3599 22 6 4.6766 2.5534 11.6726 23 1 3.7112 2.1670 11.9642 24 6 5.6688 2.7370 12.6280 25 7 6.8437 3.2067 12.2731 26 14 5.3329 2.3148 14.4164 27 1 4.9887 0.8746 14.5288 28 1 6.5438 2.5987 15.2278 29 1 4.1994 3.1350 14.9142 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5139 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 3.0013 4.1650 -1.4286 36 1 3.0603 4.3304 1.1839 37 1 2.7767 3.5242 3.2833 38 1 0.6237 3.5092 5.2530 39 1 0.2046 1.8589 4.7343 40 1 0.7701 2.1533 6.3965 41 1 3.1602 4.7883 4.4854 42 1 1.9578 4.7777 5.7979 43 1 3.6626 5.1454 6.1551 44 1 2.2335 3.2409 7.5466 45 1 5.0640 2.4225 7.6254 46 1 4.4849 4.0818 7.9075 47 1 5.7903 3.2101 10.0982 48 1 7.5362 3.3352 12.9401 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674660760.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:52 Heat of formation + Delta-G solvation = -90.779675 kcal Electronic energy + Delta-G solvation = -28693.539824 eV Core-core repulsion = 24555.838109 eV Total energy + Delta-G solvation = -4137.701715 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.54933 -40.86996 -40.13263 -38.53116 -36.06605 -35.45912 -34.91857 -33.83123 -33.25792 -31.84721 -30.11518 -29.64643 -27.98465 -26.14460 -25.78805 -24.59809 -23.78593 -22.10042 -21.15998 -21.00594 -20.50330 -19.92015 -18.95770 -17.77209 -17.27068 -17.09712 -17.09081 -16.65941 -16.40112 -16.08202 -15.90858 -15.65443 -15.49856 -15.32437 -15.07914 -14.72314 -14.66824 -14.12150 -13.97426 -13.80155 -13.57904 -13.49529 -13.33288 -13.26171 -13.15955 -13.05659 -12.87022 -12.58242 -12.47582 -12.42623 -12.12383 -11.98819 -11.87463 -11.81860 -11.49533 -11.01555 -10.82492 -10.35937 -10.11221 -10.00894 -9.53959 -9.30794 -8.46103 -5.94595 0.33554 1.15066 1.40080 1.42015 1.52772 1.81248 2.06432 2.16487 2.31249 2.33985 3.00357 3.21294 3.55227 3.56637 3.71749 3.82252 3.89161 3.92941 4.15056 4.22112 4.29304 4.30199 4.43860 4.45519 4.46749 4.54844 4.59987 4.62960 4.71355 4.77342 4.86023 4.94557 4.96237 5.01690 5.02894 5.10572 5.21794 5.27587 5.39585 5.41357 5.42031 5.52686 5.89216 6.05810 6.10097 6.41026 6.57276 6.61043 7.13318 7.24683 7.57231 8.12738 8.70968 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.027087 B = 0.001804 C = 0.001756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.465716 B =15515.863139 C =15939.579873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.054 4.054 3 C 0.069 3.931 4 O -0.182 6.182 5 C -0.030 4.030 6 C -0.197 4.197 7 C -0.266 4.266 8 C 0.584 3.416 9 O -0.575 6.575 10 N -0.703 5.703 11 C 0.162 3.838 12 H 0.065 0.935 13 C -0.155 4.155 14 C 0.084 3.916 15 H 0.089 0.911 16 C -0.184 4.184 17 N -0.675 5.675 18 C 0.068 3.932 19 C 0.437 3.563 20 O -0.623 6.623 21 N -0.573 5.573 22 C -0.334 4.334 23 H 0.078 0.922 24 C -0.013 4.013 25 N -0.920 5.920 26 Si 0.992 3.008 27 H -0.274 1.274 28 H -0.270 1.270 29 H -0.271 1.271 30 H 0.080 0.920 31 H 0.040 0.960 32 H 0.065 0.935 33 H 0.101 0.899 34 H 0.094 0.906 35 H 0.249 0.751 36 H 0.182 0.818 37 H 0.411 0.589 38 H 0.072 0.928 39 H 0.042 0.958 40 H 0.064 0.936 41 H 0.083 0.917 42 H 0.066 0.934 43 H 0.063 0.937 44 H 0.349 0.651 45 H 0.102 0.898 46 H 0.073 0.927 47 H 0.397 0.603 48 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.606 5.190 -29.557 30.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.091 4.091 3 C 0.015 3.985 4 O -0.078 6.078 5 C -0.095 4.095 6 C -0.216 4.216 7 C -0.271 4.271 8 C 0.373 3.627 9 O -0.456 6.456 10 N -0.356 5.356 11 C 0.057 3.943 12 H 0.083 0.917 13 C -0.213 4.213 14 C -0.026 4.026 15 H 0.107 0.893 16 C -0.242 4.242 17 N -0.308 5.308 18 C -0.065 4.065 19 C 0.224 3.776 20 O -0.509 6.509 21 N -0.210 5.210 22 C -0.464 4.464 23 H 0.096 0.904 24 C -0.213 4.213 25 N -0.560 5.560 26 Si 0.816 3.184 27 H -0.199 1.199 28 H -0.195 1.195 29 H -0.196 1.196 30 H 0.099 0.901 31 H 0.059 0.941 32 H 0.084 0.916 33 H 0.119 0.881 34 H 0.112 0.888 35 H 0.265 0.735 36 H 0.199 0.801 37 H 0.249 0.751 38 H 0.091 0.909 39 H 0.061 0.939 40 H 0.083 0.917 41 H 0.102 0.898 42 H 0.085 0.915 43 H 0.082 0.918 44 H 0.169 0.831 45 H 0.120 0.880 46 H 0.091 0.909 47 H 0.231 0.769 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.300 3.420 -29.368 30.230 hybrid contribution 0.579 1.319 1.213 1.884 sum -5.721 4.740 -28.155 29.118 Atomic orbital electron populations 1.21644 0.92875 1.03337 1.01662 1.20394 0.97372 0.86259 1.05088 1.23055 0.97122 0.94872 0.83431 1.83789 1.65186 1.24113 1.34691 1.24723 1.01959 0.85825 0.97003 1.23174 1.05893 0.97279 0.95250 1.21252 1.15202 0.97686 0.92938 1.17533 0.76391 0.84070 0.84693 1.90757 1.48335 1.21934 1.84613 1.45783 1.67566 1.17211 1.05079 1.20640 0.95562 0.98882 0.79231 0.91711 1.22080 0.95518 1.02171 1.01537 1.21697 0.99437 0.94236 0.87234 0.89275 1.22558 1.02921 0.95275 1.03481 1.59949 1.05378 1.64244 1.01236 1.21544 0.94574 1.01081 0.89276 1.20907 0.84880 0.83148 0.88619 1.90496 1.26350 1.51425 1.82677 1.41921 1.14368 1.57791 1.06959 1.19626 1.00175 1.42296 0.84273 0.90373 1.26034 0.94543 0.96556 1.04187 1.69660 1.04276 1.45323 1.36785 0.84998 0.77881 0.78720 0.76794 1.19907 1.19468 1.19626 0.90121 0.94061 0.91628 0.88076 0.88757 0.73518 0.80075 0.75057 0.90925 0.93890 0.91688 0.89782 0.91538 0.91785 0.83080 0.88022 0.90940 0.76938 0.91308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.89 71.98 0.71 -1.48 16 2 C -0.05 -0.94 5.94 29.85 0.18 -0.76 16 3 C 0.07 1.31 6.63 25.26 0.17 1.47 16 4 O -0.18 -2.85 10.52 4.47 0.05 -2.80 16 5 C -0.03 -0.30 12.03 66.89 0.80 0.51 16 6 C -0.20 -2.39 10.60 23.65 0.25 -2.14 16 7 C -0.27 -5.28 6.31 -18.99 -0.12 -5.40 16 8 C 0.58 14.25 7.78 86.65 0.67 14.93 16 9 O -0.58 -18.17 14.51 -4.09 -0.06 -18.23 16 10 N -0.70 -13.71 4.99 -445.85 -2.22 -15.94 16 11 C 0.16 3.86 2.63 44.99 0.12 3.98 16 12 H 0.06 1.99 7.58 -2.39 -0.02 1.98 16 13 C -0.15 -3.76 8.87 71.98 0.64 -3.12 16 14 C 0.08 1.83 2.64 44.91 0.12 1.95 16 15 H 0.09 1.85 7.80 -2.38 -0.02 1.83 16 16 C -0.18 -2.86 8.68 71.98 0.62 -2.24 16 17 N -0.68 -20.40 5.23 -495.55 -2.59 -23.00 16 18 C 0.07 2.23 5.97 85.56 0.51 2.74 16 19 C 0.44 20.64 7.82 87.66 0.69 21.32 16 20 O -0.62 -34.54 15.78 -3.05 -0.05 -34.58 16 21 N -0.57 -29.30 5.29 -306.98 -1.62 -30.92 16 22 C -0.33 -19.03 9.68 84.04 0.81 -18.22 16 23 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 24 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 25 N -0.92 -49.54 13.05 21.67 0.28 -49.26 16 26 Si 0.99 43.11 29.55 68.60 2.03 45.14 16 27 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 28 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 29 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 30 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.04 0.83 8.14 -2.38 -0.02 0.81 16 32 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.09 2.05 6.48 -2.39 -0.02 2.04 16 35 H 0.25 0.06 8.06 -2.91 -0.02 0.04 16 36 H 0.18 1.07 7.74 -2.91 -0.02 1.05 16 37 H 0.41 5.38 5.75 -92.71 -0.53 4.85 16 38 H 0.07 1.44 6.56 -2.39 -0.02 1.43 16 39 H 0.04 1.14 8.14 -2.39 -0.02 1.13 16 40 H 0.06 1.81 7.13 -2.39 -0.02 1.79 16 41 H 0.08 0.84 6.29 -2.39 -0.02 0.82 16 42 H 0.07 1.06 6.55 -2.39 -0.02 1.05 16 43 H 0.06 1.03 7.45 -2.39 -0.02 1.01 16 44 H 0.35 11.01 7.39 -89.70 -0.66 10.35 16 45 H 0.10 3.08 8.05 -2.39 -0.02 3.06 16 46 H 0.07 2.02 7.44 -2.39 -0.02 2.00 16 47 H 0.40 19.15 7.90 -92.71 -0.73 18.42 16 48 H 0.28 14.03 8.31 -92.71 -0.77 13.26 16 Total: -1.00 -75.40 395.54 1.54 -73.86 By element: Atomic # 1 Polarization: 43.36 SS G_CDS: -0.91 Total: 42.44 kcal Atomic # 6 Polarization: 6.64 SS G_CDS: 6.64 Total: 13.28 kcal Atomic # 7 Polarization: -112.95 SS G_CDS: -6.15 Total: -119.11 kcal Atomic # 8 Polarization: -55.55 SS G_CDS: -0.06 Total: -55.61 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -75.40 1.54 -73.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674660760.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.922 kcal (2) G-P(sol) polarization free energy of solvation -75.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds