Wall clock time and date at job start Tue Mar 31 2020 21:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50696 * 109.47390 * 2 1 4 4 O 1.33654 * 125.80101 * 270.04087 * 3 2 1 5 5 C 1.34207 * 110.90697 * 179.97438 * 4 3 2 6 6 C 1.34173 * 109.12796 * 359.72787 * 5 4 3 7 7 C 1.36410 * 125.80265 * 89.99908 * 3 2 1 8 8 C 1.47386 * 127.19232 * 0.02562 * 7 3 2 9 9 O 1.21610 * 119.99823 * 359.97438 * 8 7 3 10 10 N 1.34773 * 119.99893 * 179.72841 * 8 7 3 11 11 C 1.46506 * 119.99968 * 180.02562 * 10 8 7 12 12 H 1.09000 * 109.46738 * 324.99609 * 11 10 8 13 13 C 1.52993 * 109.47171 * 84.99494 * 11 10 8 14 14 C 1.52998 * 109.46894 * 205.00095 * 11 10 8 15 15 H 1.09000 * 109.47031 * 299.99334 * 14 11 10 16 16 C 1.52996 * 109.47531 * 59.99398 * 14 11 10 17 17 N 1.46906 * 109.47018 * 180.02562 * 14 11 10 18 18 C 1.46896 * 111.00146 * 154.99629 * 17 14 11 19 19 C 1.50705 * 109.46861 * 179.97438 * 18 17 14 20 20 O 1.21283 * 120.00091 * 0.02562 * 19 18 17 21 21 N 1.34776 * 119.99415 * 180.02562 * 19 18 17 22 22 C 1.37104 * 119.99468 * 180.02562 * 21 19 18 23 23 H 1.08000 * 120.00061 * 359.97438 * 22 21 19 24 24 C 1.38947 * 119.99839 * 180.02562 * 22 21 19 25 25 N 1.31415 * 120.00138 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 119.99915 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.47070 * 359.97438 * 26 24 22 28 28 H 1.48496 * 109.47263 * 119.99582 * 26 24 22 29 29 H 1.48498 * 109.46952 * 239.99697 * 26 24 22 30 30 H 1.08999 * 109.46652 * 60.00356 * 1 2 3 31 31 H 1.09001 * 109.47309 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47190 * 300.00017 * 1 2 3 33 33 H 1.09009 * 109.47338 * 239.99474 * 2 1 3 34 34 H 1.09004 * 109.46896 * 120.00328 * 2 1 3 35 35 H 1.08005 * 125.44016 * 180.02562 * 5 4 3 36 36 H 1.08006 * 127.02560 * 180.26979 * 6 5 4 37 37 H 0.97004 * 120.00018 * 359.97438 * 10 8 7 38 38 H 1.08999 * 109.47547 * 300.00481 * 13 11 10 39 39 H 1.09000 * 109.47196 * 60.00395 * 13 11 10 40 40 H 1.09002 * 109.46922 * 180.02562 * 13 11 10 41 41 H 1.09003 * 109.46763 * 60.00376 * 16 14 11 42 42 H 1.09003 * 109.46809 * 180.02562 * 16 14 11 43 43 H 1.08992 * 109.47271 * 300.00169 * 16 14 11 44 44 H 1.00901 * 110.99200 * 278.94981 * 17 14 11 45 45 H 1.08997 * 109.47462 * 299.99627 * 18 17 14 46 46 H 1.09000 * 109.47077 * 59.99841 * 18 17 14 47 47 H 0.96995 * 120.00669 * 359.97438 * 21 19 18 48 48 H 0.97003 * 119.99781 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2923 2.1581 -1.0840 5 6 2.7244 3.3810 -0.7391 6 6 2.7523 3.4762 0.5990 7 6 2.2984 2.1731 1.1063 8 6 2.1552 1.7666 2.5158 9 8 1.7602 0.6494 2.7892 10 7 2.4667 2.6312 3.5015 11 6 2.3249 2.2269 4.9025 12 1 1.4630 1.5676 5.0048 13 6 3.5878 1.4887 5.3506 14 6 2.1235 3.4685 5.7736 15 1 2.9855 4.1278 5.6713 16 6 0.8607 4.2068 5.3254 17 7 1.9819 3.0632 7.1785 18 6 2.3738 4.1525 8.0828 19 6 2.2149 3.7007 9.5118 20 8 1.8152 2.5814 9.7531 21 7 2.5172 4.5407 10.5215 22 6 2.3732 4.1296 11.8215 23 1 2.0172 3.1328 12.0363 24 6 2.6842 4.9957 12.8625 25 7 3.1169 6.2087 12.6011 26 14 2.4874 4.4358 14.6337 27 1 1.9875 3.0377 14.6582 28 1 3.8006 4.5046 15.3235 29 1 1.5169 5.3202 15.3274 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5140 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.0006 4.1652 -1.4285 36 1 3.0496 4.3341 1.1839 37 1 2.7855 3.5210 3.2833 38 1 3.7312 0.6042 4.7299 39 1 4.4497 2.1480 5.2482 40 1 3.4820 1.1875 6.3928 41 1 -0.0013 3.5474 5.4279 42 1 0.7176 5.0915 5.9458 43 1 0.9662 4.5075 4.2832 44 1 1.0415 2.7529 7.3722 45 1 3.4143 4.4203 7.8996 46 1 1.7384 5.0198 7.9035 47 1 2.8372 5.4358 10.3285 48 1 3.3344 6.8132 13.3279 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674660779.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:56 Heat of formation + Delta-G solvation = -93.870610 kcal Electronic energy + Delta-G solvation = -28691.668716 eV Core-core repulsion = 24553.832968 eV Total energy + Delta-G solvation = -4137.835748 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.54324 -40.80339 -40.12603 -38.38920 -36.06139 -35.48145 -34.91437 -33.81968 -33.25345 -31.71268 -30.59849 -29.67687 -27.93873 -25.84097 -25.63827 -24.31071 -23.61626 -22.14094 -21.62392 -21.04254 -20.63754 -19.90220 -18.88882 -17.74100 -17.40897 -17.21867 -16.90821 -16.60184 -16.37041 -15.97259 -15.84740 -15.59632 -15.33595 -15.21325 -15.07874 -14.72899 -14.56549 -14.24827 -13.96376 -13.90191 -13.59245 -13.52699 -13.37394 -13.26062 -13.14507 -12.98998 -12.72005 -12.56668 -12.48004 -12.39710 -12.22789 -12.11682 -11.97241 -11.67411 -11.50555 -11.00447 -10.81522 -10.35206 -10.12697 -10.00009 -9.53752 -9.28143 -8.46242 -5.94390 0.34403 1.15931 1.36727 1.42177 1.56091 1.81649 2.07197 2.16054 2.31381 2.35159 3.02742 3.21409 3.56182 3.57659 3.63201 3.83355 3.91166 4.04185 4.15286 4.21616 4.29547 4.32837 4.44469 4.47899 4.48696 4.57888 4.62499 4.63359 4.75179 4.79793 4.86632 4.94453 4.97748 5.02565 5.05832 5.12652 5.21849 5.27742 5.37113 5.41924 5.42274 5.55292 5.90854 6.06580 6.11546 6.36405 6.59006 6.61611 7.14146 7.25869 7.58083 8.13831 8.71275 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.030272 B = 0.001794 C = 0.001744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.738079 B =15599.764696 C =16053.117365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.054 4.054 3 C 0.068 3.932 4 O -0.182 6.182 5 C -0.031 4.031 6 C -0.196 4.196 7 C -0.265 4.265 8 C 0.586 3.414 9 O -0.575 6.575 10 N -0.701 5.701 11 C 0.164 3.836 12 H 0.064 0.936 13 C -0.145 4.145 14 C 0.086 3.914 15 H 0.102 0.898 16 C -0.178 4.178 17 N -0.672 5.672 18 C 0.069 3.931 19 C 0.437 3.563 20 O -0.624 6.624 21 N -0.574 5.574 22 C -0.332 4.332 23 H 0.077 0.923 24 C -0.013 4.013 25 N -0.919 5.919 26 Si 0.991 3.009 27 H -0.275 1.275 28 H -0.271 1.271 29 H -0.271 1.271 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.040 0.960 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.248 0.752 36 H 0.182 0.818 37 H 0.412 0.588 38 H 0.038 0.962 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.048 0.952 42 H 0.062 0.938 43 H 0.079 0.921 44 H 0.345 0.655 45 H 0.108 0.892 46 H 0.070 0.930 47 H 0.397 0.603 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.026 0.112 -30.189 30.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.091 4.091 3 C 0.014 3.986 4 O -0.078 6.078 5 C -0.096 4.096 6 C -0.215 4.215 7 C -0.270 4.270 8 C 0.375 3.625 9 O -0.457 6.457 10 N -0.353 5.353 11 C 0.058 3.942 12 H 0.083 0.917 13 C -0.203 4.203 14 C -0.025 4.025 15 H 0.120 0.880 16 C -0.237 4.237 17 N -0.304 5.304 18 C -0.063 4.063 19 C 0.225 3.775 20 O -0.510 6.510 21 N -0.211 5.211 22 C -0.462 4.462 23 H 0.095 0.905 24 C -0.213 4.213 25 N -0.561 5.561 26 Si 0.815 3.185 27 H -0.200 1.200 28 H -0.196 1.196 29 H -0.196 1.196 30 H 0.083 0.917 31 H 0.099 0.901 32 H 0.059 0.941 33 H 0.119 0.881 34 H 0.113 0.887 35 H 0.264 0.736 36 H 0.200 0.800 37 H 0.249 0.751 38 H 0.057 0.943 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.067 0.933 42 H 0.081 0.919 43 H 0.098 0.902 44 H 0.164 0.836 45 H 0.126 0.874 46 H 0.088 0.912 47 H 0.231 0.769 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.070 -1.640 -29.942 29.987 hybrid contribution -0.460 1.298 1.142 1.789 sum -0.389 -0.341 -28.800 28.805 Atomic orbital electron populations 1.21643 0.92914 1.03325 1.01647 1.20391 0.97327 0.86271 1.05076 1.23054 0.97134 0.94927 0.83446 1.83787 1.65251 1.24078 1.34720 1.24713 1.02158 0.85719 0.97043 1.23180 1.05851 0.97247 0.95211 1.21252 1.15150 0.97619 0.92961 1.17478 0.76293 0.84121 0.84595 1.90753 1.48589 1.21750 1.84584 1.45628 1.67169 1.17466 1.05034 1.20632 0.98549 0.95752 0.79243 0.91731 1.21935 0.97272 0.99627 1.01488 1.21741 0.99338 0.94570 0.86831 0.88001 1.22465 0.97568 1.00692 1.02945 1.59954 1.32622 1.35987 1.01820 1.21544 1.03197 0.93253 0.88309 1.20939 0.82591 0.85757 0.88217 1.90505 1.52317 1.22463 1.85733 1.41927 1.58805 1.15207 1.05175 1.19681 1.43416 1.00171 0.82885 0.90482 1.26009 0.96246 0.95174 1.03874 1.69672 1.44896 1.06711 1.34776 0.84892 0.78295 0.78154 0.77129 1.19959 1.19631 1.19597 0.91690 0.90126 0.94050 0.88120 0.88714 0.73603 0.80034 0.75105 0.94262 0.91769 0.91735 0.93319 0.91866 0.90230 0.83624 0.87394 0.91215 0.76904 0.91333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 9.89 71.98 0.71 -1.46 16 2 C -0.05 -0.92 5.94 29.85 0.18 -0.74 16 3 C 0.07 1.27 6.63 25.26 0.17 1.44 16 4 O -0.18 -2.84 10.52 4.53 0.05 -2.79 16 5 C -0.03 -0.31 12.03 66.89 0.80 0.50 16 6 C -0.20 -2.34 10.60 23.65 0.25 -2.09 16 7 C -0.27 -5.15 6.31 -18.99 -0.12 -5.27 16 8 C 0.59 13.93 7.78 86.65 0.67 14.60 16 9 O -0.58 -17.77 14.51 -4.06 -0.06 -17.82 16 10 N -0.70 -13.29 4.38 -445.85 -1.95 -15.24 16 11 C 0.16 3.82 2.34 44.99 0.11 3.93 16 12 H 0.06 1.87 7.58 -2.39 -0.02 1.85 16 13 C -0.14 -3.75 9.33 71.98 0.67 -3.07 16 14 C 0.09 1.81 2.22 44.91 0.10 1.91 16 15 H 0.10 1.79 7.80 -2.39 -0.02 1.77 16 16 C -0.18 -3.26 9.01 71.98 0.65 -2.61 16 17 N -0.67 -20.03 5.11 -495.58 -2.53 -22.56 16 18 C 0.07 2.22 5.97 85.56 0.51 2.73 16 19 C 0.44 20.42 7.82 87.66 0.69 21.11 16 20 O -0.62 -34.51 15.78 -3.04 -0.05 -34.56 16 21 N -0.57 -29.04 5.29 -306.98 -1.62 -30.66 16 22 C -0.33 -18.83 9.68 84.04 0.81 -18.01 16 23 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 24 C -0.01 -0.71 5.50 84.93 0.47 -0.25 16 25 N -0.92 -49.21 13.05 21.66 0.28 -48.92 16 26 Si 0.99 43.04 29.55 68.60 2.03 45.06 16 27 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 28 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 29 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 30 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.08 1.04 8.14 -2.39 -0.02 1.03 16 32 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.10 1.25 8.14 -2.38 -0.02 1.23 16 34 H 0.09 2.02 6.48 -2.38 -0.02 2.00 16 35 H 0.25 0.09 8.06 -2.91 -0.02 0.06 16 36 H 0.18 1.06 7.74 -2.91 -0.02 1.03 16 37 H 0.41 5.19 7.56 -92.71 -0.70 4.48 16 38 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.06 1.97 7.60 -2.39 -0.02 1.95 16 41 H 0.05 1.02 8.13 -2.39 -0.02 1.00 16 42 H 0.06 1.14 7.46 -2.39 -0.02 1.12 16 43 H 0.08 1.14 7.45 -2.39 -0.02 1.12 16 44 H 0.34 11.29 8.17 -89.69 -0.73 10.56 16 45 H 0.11 3.04 8.05 -2.39 -0.02 3.02 16 46 H 0.07 1.92 7.44 -2.39 -0.02 1.90 16 47 H 0.40 18.91 7.90 -92.71 -0.73 18.18 16 48 H 0.28 13.85 8.31 -92.71 -0.77 13.08 16 Total: -1.00 -74.74 402.28 1.65 -73.09 By element: Atomic # 1 Polarization: 42.86 SS G_CDS: -1.16 Total: 41.70 kcal Atomic # 6 Polarization: 6.03 SS G_CDS: 6.67 Total: 12.70 kcal Atomic # 7 Polarization: -111.57 SS G_CDS: -5.82 Total: -117.39 kcal Atomic # 8 Polarization: -55.11 SS G_CDS: -0.06 Total: -55.17 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.06 kcal Total: -74.74 1.65 -73.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674660779.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.780 kcal (2) G-P(sol) polarization free energy of solvation -74.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds