Wall clock time and date at job start Tue Mar 31 2020 21:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50693 * 109.47199 * 2 1 4 4 O 1.33655 * 125.80192 * 270.34909 * 3 2 1 5 5 C 1.34213 * 110.91275 * 180.14449 * 4 3 2 6 6 C 1.34178 * 109.12071 * 359.54836 * 5 4 3 7 7 C 1.36414 * 125.80485 * 89.99521 * 3 2 1 8 8 C 1.47377 * 127.19315 * 0.03784 * 7 3 2 9 9 O 1.21617 * 120.00022 * 359.97438 * 8 7 3 10 10 N 1.34779 * 120.00392 * 179.97438 * 8 7 3 11 11 C 1.46504 * 119.99928 * 179.97438 * 10 8 7 12 12 H 1.08996 * 109.47211 * 324.99635 * 11 10 8 13 13 C 1.52995 * 109.47006 * 85.00111 * 11 10 8 14 14 C 1.52999 * 109.46646 * 205.00079 * 11 10 8 15 15 H 1.08995 * 109.47791 * 65.00235 * 14 11 10 16 16 C 1.53002 * 109.47119 * 304.99534 * 14 11 10 17 17 N 1.46906 * 109.46737 * 185.00490 * 14 11 10 18 18 C 1.46897 * 110.99632 * 205.00077 * 17 14 11 19 19 C 1.50706 * 109.46962 * 179.97438 * 18 17 14 20 20 O 1.21290 * 119.99891 * 359.97438 * 19 18 17 21 21 N 1.34778 * 119.99693 * 179.97438 * 19 18 17 22 22 C 1.37097 * 119.99687 * 179.97438 * 21 19 18 23 23 H 1.07998 * 119.99839 * 359.97438 * 22 21 19 24 24 C 1.38944 * 120.00073 * 179.97438 * 22 21 19 25 25 N 1.31409 * 120.00280 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 120.00047 * 179.97438 * 24 22 21 27 27 H 1.48494 * 109.47056 * 0.02562 * 26 24 22 28 28 H 1.48507 * 109.46774 * 120.00174 * 26 24 22 29 29 H 1.48500 * 109.47248 * 240.00065 * 26 24 22 30 30 H 1.08996 * 109.46844 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.47332 * 300.00423 * 1 2 3 32 32 H 1.09005 * 109.46497 * 60.00672 * 1 2 3 33 33 H 1.08999 * 109.47052 * 239.99496 * 2 1 3 34 34 H 1.09000 * 109.46447 * 119.99833 * 2 1 3 35 35 H 1.08002 * 125.44315 * 179.81711 * 5 4 3 36 36 H 1.08004 * 127.02354 * 180.30025 * 6 5 4 37 37 H 0.96994 * 119.99598 * 0.02562 * 10 8 7 38 38 H 1.08998 * 109.47344 * 179.97438 * 13 11 10 39 39 H 1.09005 * 109.46931 * 299.99817 * 13 11 10 40 40 H 1.09003 * 109.47215 * 59.99488 * 13 11 10 41 41 H 1.08996 * 109.47588 * 300.00465 * 16 14 11 42 42 H 1.09003 * 109.46446 * 60.00671 * 16 14 11 43 43 H 1.08996 * 109.46972 * 180.02562 * 16 14 11 44 44 H 1.00891 * 111.00178 * 81.04332 * 17 14 11 45 45 H 1.09007 * 109.47113 * 299.99322 * 18 17 14 46 46 H 1.09000 * 109.47805 * 59.99595 * 18 17 14 47 47 H 0.96996 * 120.00137 * 0.02562 * 21 19 18 48 48 H 0.96999 * 120.00336 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 8 2.2868 2.1601 -1.0840 5 6 2.7241 3.3812 -0.7391 6 6 2.7575 3.4745 0.5990 7 6 2.2983 2.1732 1.1063 8 6 2.1553 1.7667 2.5157 9 8 1.7605 0.6494 2.7892 10 7 2.4620 2.6331 3.5015 11 6 2.3192 2.2291 4.9025 12 1 1.4596 1.5667 5.0038 13 6 3.5841 1.4958 5.3532 14 6 2.1119 3.4704 5.7725 15 1 1.1654 3.9435 5.5110 16 6 3.2576 4.4564 5.5357 17 7 2.0885 3.0779 7.1880 18 6 1.3345 4.0495 7.9913 19 6 1.3319 3.6140 9.4340 20 8 1.9017 2.5944 9.7608 21 7 0.6964 4.3577 10.3612 22 6 0.6935 3.9613 11.6736 23 1 1.2002 3.0529 11.9644 24 6 0.0388 4.7282 12.6295 25 7 -0.5781 5.8332 12.2757 26 14 0.0344 4.1877 14.4177 27 1 0.7935 2.9186 14.5531 28 1 0.6717 5.2368 15.2535 29 1 -1.3651 3.9783 14.8681 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3632 0.5138 -0.8901 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.0006 4.1652 -1.4286 36 1 3.0593 4.3307 1.1839 37 1 2.7765 3.5243 3.2833 38 1 3.4782 1.1956 6.3956 39 1 3.7318 0.6115 4.7332 40 1 4.4438 2.1583 5.2518 41 1 4.2041 3.9834 5.7972 42 1 3.2749 4.7476 4.4854 43 1 3.1101 5.3405 6.1558 44 1 3.0244 2.9612 7.5463 45 1 1.8024 5.0305 7.9084 46 1 0.3087 4.1042 7.6268 47 1 0.2404 5.1729 10.0998 48 1 -1.0348 6.3687 12.9431 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674660780.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:28:00 Heat of formation + Delta-G solvation = -66.252673 kcal Electronic energy + Delta-G solvation = -28699.890500 eV Core-core repulsion = 24563.252356 eV Total energy + Delta-G solvation = -4136.638144 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.92750 -39.88770 -38.45114 -37.30850 -34.65448 -34.19104 -33.81321 -33.10490 -31.28218 -30.74958 -29.24569 -28.92605 -26.41136 -25.16228 -24.32899 -23.65761 -23.01623 -21.38496 -20.14326 -19.67208 -19.27993 -18.25807 -17.89880 -16.64094 -16.38991 -16.09744 -15.80276 -15.55255 -15.13625 -14.90520 -14.64921 -14.51797 -14.46097 -14.02864 -13.83476 -13.78254 -13.33690 -13.29011 -13.06534 -12.87947 -12.59583 -12.35021 -12.22662 -12.17217 -11.93234 -11.81228 -11.54895 -11.41221 -11.30520 -11.06585 -10.94744 -10.82577 -10.34121 -10.22489 -10.16379 -10.04188 -9.52024 -9.20940 -8.90494 -8.47485 -8.07975 -7.96004 -6.41868 -3.82557 1.08207 1.69597 2.43965 3.04303 3.16534 3.19798 3.27213 3.34722 3.90635 4.10544 4.12042 4.35410 4.48683 4.49207 4.73859 4.77593 4.80982 4.94724 5.04703 5.08875 5.15609 5.18458 5.26233 5.28118 5.37610 5.41233 5.56553 5.62367 5.64552 5.67882 5.76242 5.80010 5.84879 5.90244 5.95603 5.97584 6.00316 6.13339 6.25910 6.37952 6.48288 6.67964 7.16171 7.40702 7.55590 7.62469 8.06544 8.12481 8.61086 9.18045 9.54250 10.05542 10.75947 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.025188 B = 0.001814 C = 0.001782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.361278 B =15428.155205 C =15706.982596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.053 4.053 3 C 0.081 3.919 4 O -0.176 6.176 5 C -0.039 4.039 6 C -0.190 4.190 7 C -0.244 4.244 8 C 0.589 3.411 9 O -0.537 6.537 10 N -0.718 5.718 11 C 0.155 3.845 12 H 0.097 0.903 13 C -0.163 4.163 14 C 0.078 3.922 15 H 0.082 0.918 16 C -0.189 4.189 17 N -0.658 5.658 18 C 0.051 3.949 19 C 0.441 3.559 20 O -0.582 6.582 21 N -0.564 5.564 22 C -0.298 4.298 23 H 0.104 0.896 24 C 0.021 3.979 25 N -0.902 5.902 26 Si 0.929 3.071 27 H -0.268 1.268 28 H -0.282 1.282 29 H -0.281 1.281 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.054 0.946 33 H 0.081 0.919 34 H 0.115 0.885 35 H 0.207 0.793 36 H 0.156 0.844 37 H 0.396 0.604 38 H 0.081 0.919 39 H 0.056 0.944 40 H 0.052 0.948 41 H 0.065 0.935 42 H 0.055 0.945 43 H 0.062 0.938 44 H 0.353 0.647 45 H 0.044 0.956 46 H 0.086 0.914 47 H 0.392 0.608 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.293 -1.331 -27.870 28.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.090 4.090 3 C 0.028 3.972 4 O -0.072 6.072 5 C -0.105 4.105 6 C -0.209 4.209 7 C -0.248 4.248 8 C 0.377 3.623 9 O -0.416 6.416 10 N -0.371 5.371 11 C 0.051 3.949 12 H 0.115 0.885 13 C -0.221 4.221 14 C -0.033 4.033 15 H 0.100 0.900 16 C -0.248 4.248 17 N -0.290 5.290 18 C -0.081 4.081 19 C 0.226 3.774 20 O -0.466 6.466 21 N -0.201 5.201 22 C -0.428 4.428 23 H 0.122 0.878 24 C -0.180 4.180 25 N -0.544 5.544 26 Si 0.757 3.243 27 H -0.192 1.192 28 H -0.208 1.208 29 H -0.207 1.207 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.099 0.901 34 H 0.133 0.867 35 H 0.224 0.776 36 H 0.173 0.827 37 H 0.232 0.768 38 H 0.100 0.900 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.084 0.916 42 H 0.074 0.926 43 H 0.081 0.919 44 H 0.174 0.826 45 H 0.062 0.938 46 H 0.104 0.896 47 H 0.225 0.775 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.714 -3.204 -27.649 28.415 hybrid contribution 0.560 2.063 0.771 2.273 sum 6.275 -1.141 -26.878 27.624 Atomic orbital electron populations 1.21692 0.93201 1.02801 1.02412 1.20419 0.97106 0.86308 1.05146 1.22906 0.96816 0.94396 0.83059 1.83775 1.65146 1.23190 1.35078 1.23857 1.03986 0.86251 0.96403 1.22865 1.05690 0.97765 0.94596 1.21205 1.13819 0.95743 0.94038 1.17162 0.76919 0.84591 0.83610 1.90775 1.46680 1.20171 1.83926 1.46001 1.67998 1.16859 1.06217 1.20892 1.00000 0.95968 0.78085 0.88457 1.22175 0.96684 1.00222 1.03009 1.21724 0.98547 0.93301 0.89777 0.89958 1.22617 1.00110 1.00499 1.01560 1.60017 1.21983 1.47516 0.99533 1.21709 0.99381 0.93444 0.93610 1.19797 0.84775 0.86397 0.86406 1.90529 1.48474 1.26234 1.81370 1.41867 1.47363 1.23566 1.07291 1.19755 1.31808 1.08806 0.82382 0.87841 1.25266 0.96564 0.95633 1.00568 1.69617 1.35064 1.14443 1.35235 0.85799 0.77985 0.78747 0.81808 1.19197 1.20803 1.20742 0.91232 0.91729 0.92712 0.90071 0.86672 0.77607 0.82676 0.76826 0.89980 0.92528 0.92942 0.91588 0.92612 0.91942 0.82642 0.93770 0.89553 0.77485 0.91941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 9.90 37.16 0.37 -0.79 16 2 C -0.05 -0.45 5.94 -27.88 -0.17 -0.62 16 3 C 0.08 0.80 6.63 -34.97 -0.23 0.57 16 4 O -0.18 -1.55 10.52 7.65 0.08 -1.47 16 5 C -0.04 -0.26 12.03 29.30 0.35 0.10 16 6 C -0.19 -1.42 10.60 -37.45 -0.40 -1.81 16 7 C -0.24 -2.51 6.31 -103.28 -0.65 -3.16 16 8 C 0.59 7.14 7.78 -12.54 -0.10 7.05 16 9 O -0.54 -8.03 14.51 5.26 0.08 -7.95 16 10 N -0.72 -7.37 4.99 -54.90 -0.27 -7.64 16 11 C 0.15 1.86 2.63 -67.93 -0.18 1.68 16 12 H 0.10 1.43 7.58 -51.93 -0.39 1.04 16 13 C -0.16 -1.96 8.86 37.15 0.33 -1.63 16 14 C 0.08 0.90 2.64 -67.71 -0.18 0.73 16 15 H 0.08 0.95 7.80 -51.93 -0.40 0.54 16 16 C -0.19 -1.76 8.68 37.16 0.32 -1.43 16 17 N -0.66 -10.12 5.23 -107.98 -0.56 -10.68 16 18 C 0.05 0.87 5.96 -4.97 -0.03 0.84 16 19 C 0.44 10.29 7.82 -10.98 -0.09 10.21 16 20 O -0.58 -15.69 15.78 5.55 0.09 -15.60 16 21 N -0.56 -14.22 5.29 -10.96 -0.06 -14.28 16 22 C -0.30 -8.31 9.68 -14.94 -0.14 -8.45 16 23 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 24 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 25 N -0.90 -24.52 13.05 55.50 0.72 -23.79 16 26 Si 0.93 21.09 29.55 -169.99 -5.02 16.06 16 27 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 28 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 29 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.12 1.15 6.48 -51.93 -0.34 0.82 16 35 H 0.21 0.51 8.06 -52.49 -0.42 0.09 16 36 H 0.16 0.77 7.74 -52.48 -0.41 0.36 16 37 H 0.40 3.11 5.75 -40.82 -0.23 2.88 16 38 H 0.08 1.10 7.13 -51.93 -0.37 0.73 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.05 0.55 6.57 -51.93 -0.34 0.21 16 41 H 0.07 0.62 6.55 -51.93 -0.34 0.28 16 42 H 0.05 0.39 6.29 -51.93 -0.33 0.07 16 43 H 0.06 0.61 7.45 -51.93 -0.39 0.22 16 44 H 0.35 5.60 7.39 -39.30 -0.29 5.31 16 45 H 0.04 0.67 7.44 -51.93 -0.39 0.28 16 46 H 0.09 1.38 8.06 -51.93 -0.42 0.96 16 47 H 0.39 9.43 7.90 -40.82 -0.32 9.10 16 48 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 395.54 15.07 5.96 5.96 Total: -1.00 -33.44 395.54 -6.88 -40.32 By element: Atomic # 1 Polarization: 22.34 SS G_CDS: -7.00 Total: 15.34 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: -0.89 Total: 3.74 kcal Atomic # 7 Polarization: -56.23 SS G_CDS: -0.17 Total: -56.40 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: 0.24 Total: -25.02 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.44 -6.88 -40.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674660780.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.929 kcal (2) G-P(sol) polarization free energy of solvation -33.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds