Wall clock time and date at job start Tue Mar 31 2020 21:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50693 * 109.47199 * 2 1 4 4 O 1.33655 * 125.80192 * 270.34909 * 3 2 1 5 5 C 1.34213 * 110.91275 * 180.14449 * 4 3 2 6 6 C 1.34178 * 109.12071 * 359.54836 * 5 4 3 7 7 C 1.36414 * 125.80485 * 89.99521 * 3 2 1 8 8 C 1.47377 * 127.19315 * 0.03784 * 7 3 2 9 9 O 1.21617 * 120.00022 * 359.97438 * 8 7 3 10 10 N 1.34779 * 120.00392 * 179.97438 * 8 7 3 11 11 C 1.46504 * 119.99928 * 179.97438 * 10 8 7 12 12 H 1.08996 * 109.47211 * 324.99635 * 11 10 8 13 13 C 1.52995 * 109.47006 * 85.00111 * 11 10 8 14 14 C 1.52999 * 109.46646 * 205.00079 * 11 10 8 15 15 H 1.08995 * 109.47791 * 65.00235 * 14 11 10 16 16 C 1.53002 * 109.47119 * 304.99534 * 14 11 10 17 17 N 1.46906 * 109.46737 * 185.00490 * 14 11 10 18 18 C 1.46897 * 110.99632 * 205.00077 * 17 14 11 19 19 C 1.50706 * 109.46962 * 179.97438 * 18 17 14 20 20 O 1.21290 * 119.99891 * 359.97438 * 19 18 17 21 21 N 1.34778 * 119.99693 * 179.97438 * 19 18 17 22 22 C 1.37097 * 119.99687 * 179.97438 * 21 19 18 23 23 H 1.07998 * 119.99839 * 359.97438 * 22 21 19 24 24 C 1.38944 * 120.00073 * 179.97438 * 22 21 19 25 25 N 1.31409 * 120.00280 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 120.00047 * 179.97438 * 24 22 21 27 27 H 1.48494 * 109.47056 * 0.02562 * 26 24 22 28 28 H 1.48507 * 109.46774 * 120.00174 * 26 24 22 29 29 H 1.48500 * 109.47248 * 240.00065 * 26 24 22 30 30 H 1.08996 * 109.46844 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.47332 * 300.00423 * 1 2 3 32 32 H 1.09005 * 109.46497 * 60.00672 * 1 2 3 33 33 H 1.08999 * 109.47052 * 239.99496 * 2 1 3 34 34 H 1.09000 * 109.46447 * 119.99833 * 2 1 3 35 35 H 1.08002 * 125.44315 * 179.81711 * 5 4 3 36 36 H 1.08004 * 127.02354 * 180.30025 * 6 5 4 37 37 H 0.96994 * 119.99598 * 0.02562 * 10 8 7 38 38 H 1.08998 * 109.47344 * 179.97438 * 13 11 10 39 39 H 1.09005 * 109.46931 * 299.99817 * 13 11 10 40 40 H 1.09003 * 109.47215 * 59.99488 * 13 11 10 41 41 H 1.08996 * 109.47588 * 300.00465 * 16 14 11 42 42 H 1.09003 * 109.46446 * 60.00671 * 16 14 11 43 43 H 1.08996 * 109.46972 * 180.02562 * 16 14 11 44 44 H 1.00891 * 111.00178 * 81.04332 * 17 14 11 45 45 H 1.09007 * 109.47113 * 299.99322 * 18 17 14 46 46 H 1.09000 * 109.47805 * 59.99595 * 18 17 14 47 47 H 0.96996 * 120.00137 * 0.02562 * 21 19 18 48 48 H 0.96999 * 120.00336 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 8 2.2868 2.1601 -1.0840 5 6 2.7241 3.3812 -0.7391 6 6 2.7575 3.4745 0.5990 7 6 2.2983 2.1732 1.1063 8 6 2.1553 1.7667 2.5157 9 8 1.7605 0.6494 2.7892 10 7 2.4620 2.6331 3.5015 11 6 2.3192 2.2291 4.9025 12 1 1.4596 1.5667 5.0038 13 6 3.5841 1.4958 5.3532 14 6 2.1119 3.4704 5.7725 15 1 1.1654 3.9435 5.5110 16 6 3.2576 4.4564 5.5357 17 7 2.0885 3.0779 7.1880 18 6 1.3345 4.0495 7.9913 19 6 1.3319 3.6140 9.4340 20 8 1.9017 2.5944 9.7608 21 7 0.6964 4.3577 10.3612 22 6 0.6935 3.9613 11.6736 23 1 1.2002 3.0529 11.9644 24 6 0.0388 4.7282 12.6295 25 7 -0.5781 5.8332 12.2757 26 14 0.0344 4.1877 14.4177 27 1 0.7935 2.9186 14.5531 28 1 0.6717 5.2368 15.2535 29 1 -1.3651 3.9783 14.8681 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3632 0.5138 -0.8901 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.0006 4.1652 -1.4286 36 1 3.0593 4.3307 1.1839 37 1 2.7765 3.5243 3.2833 38 1 3.4782 1.1956 6.3956 39 1 3.7318 0.6115 4.7332 40 1 4.4438 2.1583 5.2518 41 1 4.2041 3.9834 5.7972 42 1 3.2749 4.7476 4.4854 43 1 3.1101 5.3405 6.1558 44 1 3.0244 2.9612 7.5463 45 1 1.8024 5.0305 7.9084 46 1 0.3087 4.1042 7.6268 47 1 0.2404 5.1729 10.0998 48 1 -1.0348 6.3687 12.9431 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674660780.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:59 Heat of formation + Delta-G solvation = -90.945723 kcal Electronic energy + Delta-G solvation = -28700.961271 eV Core-core repulsion = 24563.252356 eV Total energy + Delta-G solvation = -4137.708915 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.54902 -40.87011 -40.13555 -38.53222 -36.07015 -35.46048 -34.91805 -33.83099 -33.26035 -31.84774 -30.11400 -29.64900 -27.98848 -26.14209 -25.78923 -24.60701 -23.78287 -22.09952 -21.16334 -21.00764 -20.50122 -19.92426 -18.95831 -17.76963 -17.30993 -17.11215 -17.03601 -16.67415 -16.40201 -16.08547 -15.91293 -15.65123 -15.48517 -15.31747 -15.07057 -14.75315 -14.67435 -14.11663 -13.93970 -13.85481 -13.57006 -13.50314 -13.33092 -13.26268 -13.15988 -13.05839 -12.87897 -12.58566 -12.47105 -12.40139 -12.11752 -11.97606 -11.88098 -11.83210 -11.51050 -11.01087 -10.82408 -10.36147 -10.11299 -10.00913 -9.54057 -9.30851 -8.46684 -5.95057 0.33566 1.15084 1.36530 1.41927 1.56034 1.81258 2.05955 2.16458 2.30998 2.33979 3.00164 3.20824 3.55043 3.56705 3.71692 3.82349 3.89045 3.93031 4.15127 4.22061 4.29271 4.30002 4.44039 4.45245 4.46609 4.54856 4.60020 4.62921 4.71322 4.77348 4.86031 4.94491 4.96206 5.01670 5.03024 5.10575 5.21789 5.27817 5.39666 5.41582 5.42095 5.52666 5.89174 6.05833 6.10078 6.40984 6.57279 6.60725 7.13277 7.24696 7.57000 8.12467 8.70893 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.025188 B = 0.001814 C = 0.001782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.361278 B =15428.155205 C =15706.982596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.054 4.054 3 C 0.069 3.931 4 O -0.182 6.182 5 C -0.030 4.030 6 C -0.197 4.197 7 C -0.266 4.266 8 C 0.584 3.416 9 O -0.575 6.575 10 N -0.703 5.703 11 C 0.162 3.838 12 H 0.064 0.936 13 C -0.155 4.155 14 C 0.084 3.916 15 H 0.089 0.911 16 C -0.184 4.184 17 N -0.675 5.675 18 C 0.067 3.933 19 C 0.437 3.563 20 O -0.623 6.623 21 N -0.574 5.574 22 C -0.332 4.332 23 H 0.078 0.922 24 C -0.014 4.014 25 N -0.920 5.920 26 Si 0.992 3.008 27 H -0.274 1.274 28 H -0.270 1.270 29 H -0.272 1.272 30 H 0.080 0.920 31 H 0.039 0.961 32 H 0.064 0.936 33 H 0.101 0.899 34 H 0.095 0.905 35 H 0.249 0.751 36 H 0.182 0.818 37 H 0.411 0.589 38 H 0.064 0.936 39 H 0.042 0.958 40 H 0.072 0.928 41 H 0.066 0.934 42 H 0.084 0.916 43 H 0.063 0.937 44 H 0.349 0.651 45 H 0.073 0.927 46 H 0.102 0.898 47 H 0.397 0.603 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.853 0.778 -29.588 30.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.090 4.090 3 C 0.015 3.985 4 O -0.078 6.078 5 C -0.095 4.095 6 C -0.216 4.216 7 C -0.271 4.271 8 C 0.373 3.627 9 O -0.456 6.456 10 N -0.356 5.356 11 C 0.057 3.943 12 H 0.083 0.917 13 C -0.213 4.213 14 C -0.026 4.026 15 H 0.107 0.893 16 C -0.242 4.242 17 N -0.308 5.308 18 C -0.065 4.065 19 C 0.225 3.775 20 O -0.509 6.509 21 N -0.211 5.211 22 C -0.462 4.462 23 H 0.096 0.904 24 C -0.214 4.214 25 N -0.561 5.561 26 Si 0.816 3.184 27 H -0.199 1.199 28 H -0.195 1.195 29 H -0.197 1.197 30 H 0.099 0.901 31 H 0.059 0.941 32 H 0.083 0.917 33 H 0.120 0.880 34 H 0.113 0.887 35 H 0.265 0.735 36 H 0.199 0.801 37 H 0.249 0.751 38 H 0.083 0.917 39 H 0.061 0.939 40 H 0.091 0.909 41 H 0.085 0.915 42 H 0.102 0.898 43 H 0.082 0.918 44 H 0.169 0.831 45 H 0.091 0.909 46 H 0.120 0.880 47 H 0.231 0.769 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.276 -1.039 -29.401 30.082 hybrid contribution 0.403 1.392 1.217 1.893 sum 6.680 0.353 -28.184 28.967 Atomic orbital electron populations 1.21649 0.92975 1.03336 1.01640 1.20392 0.97279 0.86265 1.05113 1.23055 0.97114 0.94886 0.83431 1.83789 1.65192 1.24106 1.34690 1.24723 1.01959 0.85823 0.97003 1.23174 1.05914 0.97259 0.95250 1.21253 1.15207 0.97676 0.92938 1.17533 0.76266 0.84198 0.84693 1.90757 1.48419 1.21853 1.84610 1.45785 1.67473 1.17302 1.05080 1.20640 0.98638 0.95803 0.79228 0.91731 1.22082 0.97545 1.00154 1.01546 1.21696 1.00171 0.93504 0.87231 0.89290 1.22558 0.98679 0.99521 1.03476 1.59945 1.21742 1.47890 1.01234 1.21546 1.00948 0.94725 0.89262 1.20911 0.82731 0.85250 0.88615 1.90499 1.49758 1.27972 1.82702 1.41930 1.48109 1.24079 1.06975 1.19690 1.33360 1.08862 0.84255 0.90399 1.26029 0.95664 0.95488 1.04178 1.69671 1.34976 1.14828 1.36634 0.84880 0.78262 0.78216 0.77029 1.19883 1.19502 1.19712 0.90114 0.94128 0.91654 0.88024 0.88705 0.73518 0.80075 0.75056 0.91690 0.93866 0.90903 0.91528 0.89777 0.91789 0.83074 0.90929 0.88018 0.76938 0.91319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 9.90 71.98 0.71 -1.56 16 2 C -0.05 -0.93 5.94 29.85 0.18 -0.75 16 3 C 0.07 1.30 6.63 25.26 0.17 1.47 16 4 O -0.18 -2.85 10.52 4.47 0.05 -2.80 16 5 C -0.03 -0.30 12.03 66.89 0.80 0.51 16 6 C -0.20 -2.39 10.60 23.65 0.25 -2.14 16 7 C -0.27 -5.27 6.31 -18.99 -0.12 -5.39 16 8 C 0.58 14.25 7.78 86.65 0.67 14.92 16 9 O -0.58 -18.17 14.51 -4.08 -0.06 -18.22 16 10 N -0.70 -13.71 4.99 -445.85 -2.22 -15.93 16 11 C 0.16 3.86 2.63 44.99 0.12 3.98 16 12 H 0.06 1.99 7.58 -2.39 -0.02 1.97 16 13 C -0.15 -3.76 8.86 71.98 0.64 -3.12 16 14 C 0.08 1.83 2.64 44.91 0.12 1.95 16 15 H 0.09 1.85 7.80 -2.39 -0.02 1.83 16 16 C -0.18 -2.86 8.68 71.98 0.62 -2.23 16 17 N -0.68 -20.40 5.23 -495.55 -2.59 -22.99 16 18 C 0.07 2.22 5.96 85.56 0.51 2.73 16 19 C 0.44 20.65 7.82 87.66 0.69 21.34 16 20 O -0.62 -34.56 15.78 -3.06 -0.05 -34.60 16 21 N -0.57 -29.32 5.29 -306.99 -1.62 -30.94 16 22 C -0.33 -18.92 9.68 84.04 0.81 -18.11 16 23 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 24 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 25 N -0.92 -49.57 13.05 21.66 0.28 -49.28 16 26 Si 0.99 43.16 29.55 68.60 2.03 45.19 16 27 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 28 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 29 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 30 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 33 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.09 2.04 6.48 -2.39 -0.02 2.03 16 35 H 0.25 0.06 8.06 -2.91 -0.02 0.04 16 36 H 0.18 1.07 7.74 -2.91 -0.02 1.05 16 37 H 0.41 5.38 5.75 -92.71 -0.53 4.85 16 38 H 0.06 1.80 7.13 -2.39 -0.02 1.79 16 39 H 0.04 1.15 8.14 -2.38 -0.02 1.13 16 40 H 0.07 1.44 6.57 -2.39 -0.02 1.43 16 41 H 0.07 1.06 6.55 -2.39 -0.02 1.05 16 42 H 0.08 0.84 6.29 -2.39 -0.02 0.82 16 43 H 0.06 1.03 7.45 -2.39 -0.02 1.01 16 44 H 0.35 11.00 7.39 -89.70 -0.66 10.34 16 45 H 0.07 2.02 7.44 -2.38 -0.02 2.00 16 46 H 0.10 3.08 8.06 -2.39 -0.02 3.06 16 47 H 0.40 19.15 7.90 -92.71 -0.73 18.42 16 48 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 Total: -1.00 -75.57 395.54 1.54 -74.03 By element: Atomic # 1 Polarization: 43.15 SS G_CDS: -0.91 Total: 42.24 kcal Atomic # 6 Polarization: 6.67 SS G_CDS: 6.64 Total: 13.32 kcal Atomic # 7 Polarization: -112.99 SS G_CDS: -6.15 Total: -119.14 kcal Atomic # 8 Polarization: -55.57 SS G_CDS: -0.06 Total: -55.63 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -75.57 1.54 -74.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674660780.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.919 kcal (2) G-P(sol) polarization free energy of solvation -75.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds