Wall clock time and date at job start Tue Mar 31 2020 21:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50693 * 109.47244 * 2 1 4 4 C 1.38356 * 120.27259 * 270.02530 * 3 2 1 5 5 N 1.31883 * 121.18769 * 179.97438 * 4 3 2 6 6 C 1.32238 * 121.79756 * 359.74638 * 5 4 3 7 7 O 1.35425 * 119.80259 * 180.26796 * 6 5 4 8 8 C 1.40279 * 120.39947 * 0.53982 * 6 5 4 9 9 C 1.47531 * 120.59542 * 179.72842 * 8 6 5 10 10 O 1.21589 * 120.00215 * 46.43310 * 9 8 6 11 11 N 1.34779 * 119.99605 * 226.43639 * 9 8 6 12 12 C 1.46500 * 120.00019 * 355.73201 * 11 9 8 13 13 C 1.46495 * 119.99895 * 175.74009 * 11 9 8 14 14 C 1.52994 * 109.47462 * 89.99548 * 13 11 9 15 15 H 1.09003 * 109.47416 * 305.00192 * 14 13 11 16 16 O 1.42902 * 109.46974 * 65.00261 * 14 13 11 17 17 C 1.53002 * 109.47603 * 185.00041 * 14 13 11 18 18 N 1.46497 * 109.47634 * 180.02562 * 17 14 13 19 19 C 1.46497 * 119.99866 * 270.00206 * 18 17 14 20 20 C 1.36942 * 119.99967 * 89.99613 * 18 17 14 21 21 H 1.07998 * 120.00181 * 330.45721 * 20 18 17 22 22 C 1.38808 * 119.99721 * 150.17729 * 20 18 17 23 23 N 1.31621 * 120.00078 * 2.11115 * 22 20 18 24 24 Si 1.86795 * 119.99938 * 182.11042 * 22 20 18 25 25 H 1.48501 * 109.47328 * 0.02562 * 24 22 20 26 26 H 1.48507 * 109.47151 * 120.00148 * 24 22 20 27 27 H 1.48498 * 109.47350 * 239.99935 * 24 22 20 28 28 C 1.38336 * 120.27055 * 90.00304 * 3 2 1 29 29 H 1.08993 * 109.47471 * 59.99166 * 1 2 3 30 30 H 1.08996 * 109.47641 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46468 * 299.99659 * 1 2 3 32 32 H 1.09004 * 109.46468 * 240.00341 * 2 1 3 33 33 H 1.08993 * 109.47471 * 120.00834 * 2 1 3 34 34 H 1.08001 * 119.41029 * 359.97438 * 4 3 2 35 35 H 0.96695 * 114.00427 * 270.27248 * 7 6 5 36 36 H 1.08990 * 109.47609 * 274.90082 * 12 11 9 37 37 H 1.09002 * 109.47151 * 34.90683 * 12 11 9 38 38 H 1.09007 * 109.46817 * 154.90201 * 12 11 9 39 39 H 1.09002 * 109.46979 * 329.99656 * 13 11 9 40 40 H 1.09000 * 109.47326 * 209.99723 * 13 11 9 41 41 H 0.96698 * 114.00566 * 59.99869 * 16 14 13 42 42 H 1.09003 * 109.47030 * 59.99883 * 17 14 13 43 43 H 1.09003 * 109.46858 * 300.00493 * 17 14 13 44 44 H 1.09002 * 109.46986 * 273.77960 * 19 18 17 45 45 H 1.08998 * 109.47019 * 33.77930 * 19 18 17 46 46 H 1.09000 * 109.47160 * 153.77777 * 19 18 17 47 47 H 0.97003 * 120.00300 * 179.97438 * 23 22 20 48 48 H 1.07999 * 120.82281 * 0.05037 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.2643 2.0785 -1.1949 5 7 2.7034 3.3219 -1.2160 6 6 2.9369 3.9973 -0.1033 7 8 3.3823 5.2744 -0.1721 8 6 2.7315 3.3971 1.1478 9 6 2.9963 4.1447 2.3918 10 8 2.5856 5.2823 2.5167 11 7 3.6937 3.5666 3.3899 12 6 4.1080 2.1658 3.2783 13 6 4.0372 4.3389 4.5864 14 6 2.9230 4.1933 5.6247 15 1 1.9711 4.4824 5.1793 16 8 2.8521 2.8340 6.0598 17 6 3.2209 5.0973 6.8227 18 7 2.1544 4.9574 7.8172 19 6 0.9808 5.8324 7.7607 20 6 2.2544 4.0087 8.7997 21 1 2.7982 3.0943 8.6140 22 6 1.6618 4.2249 10.0361 23 7 0.9686 5.3230 10.2507 24 14 1.8480 2.9573 11.3955 25 1 2.6687 1.8214 10.9042 26 1 2.5169 3.5809 12.5656 27 1 0.5071 2.4622 11.7978 28 6 2.2648 2.0782 1.1947 29 1 -0.3634 0.5139 -0.8898 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3632 0.5138 0.8901 32 1 1.8932 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8898 34 1 2.0826 1.5645 -2.1272 35 1 4.3457 5.3544 -0.1948 36 1 3.2970 1.5193 3.6131 37 1 4.3478 1.9396 2.2393 38 1 4.9876 1.9966 3.8994 39 1 4.1507 5.3899 4.3202 40 1 4.9730 3.9665 5.0030 41 1 3.6663 2.5084 6.4674 42 1 3.2750 6.1342 6.4909 43 1 4.1728 4.8082 7.2681 44 1 1.1911 6.7575 8.2975 45 1 0.7476 6.0607 6.7207 46 1 0.1304 5.3300 8.2218 47 1 0.5542 5.4739 11.1147 48 1 2.0916 1.5857 2.1402 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677179506.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:13 Heat of formation + Delta-G solvation = -57.774321 kcal Electronic energy + Delta-G solvation = -29944.496900 eV Core-core repulsion = 25808.226405 eV Total energy + Delta-G solvation = -4136.270495 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.25662 -39.47708 -37.73703 -37.28476 -35.38839 -34.62222 -34.48647 -32.71752 -31.36087 -29.71717 -29.36091 -27.03919 -26.15622 -25.68877 -24.47460 -24.23813 -22.62724 -21.67346 -20.45529 -19.67013 -19.00094 -17.58853 -17.30447 -16.87150 -16.43804 -16.12299 -15.85348 -15.23515 -14.96073 -14.75207 -14.62381 -14.36148 -14.13637 -13.85606 -13.63640 -13.50145 -13.29049 -13.25906 -12.89365 -12.77932 -12.42900 -12.41929 -12.18440 -11.84126 -11.74849 -11.58803 -11.43042 -11.07355 -10.84639 -10.65096 -10.56006 -10.32991 -10.23262 -10.08820 -9.96071 -9.89813 -9.77871 -9.57831 -9.11086 -8.59316 -8.36270 -6.54640 -5.68450 -3.17287 0.36966 0.74066 2.57898 2.82642 3.15513 3.39745 3.40308 3.45820 3.48128 4.11398 4.26411 4.36848 4.48589 4.52495 4.62383 4.89447 4.89975 4.94219 4.94427 5.07925 5.16006 5.25449 5.26554 5.37035 5.43181 5.46692 5.48670 5.55581 5.59306 5.78195 5.83376 5.84155 5.89406 5.98321 6.06425 6.08298 6.44186 6.58582 6.78742 6.94391 7.15967 7.26712 7.50142 7.50741 7.81822 7.89850 8.07694 8.26765 8.52711 9.31721 9.91938 10.45284 11.38129 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.015963 B = 0.002695 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.635859 B =10387.711917 C =11270.752631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.077 4.077 3 C -0.151 4.151 4 C 0.142 3.858 5 N -0.502 5.502 6 C 0.352 3.648 7 O -0.464 6.464 8 C -0.186 4.186 9 C 0.559 3.441 10 O -0.511 6.511 11 N -0.600 5.600 12 C 0.079 3.921 13 C 0.085 3.915 14 C 0.071 3.929 15 H 0.091 0.909 16 O -0.544 6.544 17 C 0.125 3.875 18 N -0.593 5.593 19 C 0.162 3.838 20 C -0.241 4.241 21 H 0.068 0.932 22 C 0.000 4.000 23 N -0.910 5.910 24 Si 0.904 3.096 25 H -0.278 1.278 26 H -0.291 1.291 27 H -0.291 1.291 28 C -0.030 4.030 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.163 0.837 35 H 0.400 0.600 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.074 0.926 39 H 0.089 0.911 40 H 0.079 0.921 41 H 0.360 0.640 42 H 0.044 0.956 43 H 0.049 0.951 44 H 0.016 0.984 45 H -0.012 1.012 46 H 0.061 0.939 47 H 0.251 0.749 48 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.911 -11.277 -22.783 26.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.115 4.115 3 C -0.153 4.153 4 C -0.016 4.016 5 N -0.220 5.220 6 C 0.172 3.828 7 O -0.271 6.271 8 C -0.193 4.193 9 C 0.345 3.655 10 O -0.386 6.386 11 N -0.333 5.333 12 C -0.064 4.064 13 C -0.038 4.038 14 C 0.008 3.992 15 H 0.108 0.892 16 O -0.348 6.348 17 C -0.004 4.004 18 N -0.315 5.315 19 C 0.018 3.982 20 C -0.371 4.371 21 H 0.086 0.914 22 C -0.197 4.197 23 N -0.556 5.556 24 Si 0.735 3.265 25 H -0.204 1.204 26 H -0.218 1.218 27 H -0.218 1.218 28 C -0.055 4.055 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.180 0.820 35 H 0.258 0.742 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.093 0.907 39 H 0.108 0.892 40 H 0.097 0.903 41 H 0.206 0.794 42 H 0.063 0.937 43 H 0.068 0.932 44 H 0.034 0.966 45 H 0.007 0.993 46 H 0.079 0.921 47 H 0.061 0.939 48 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 6.569 -9.898 -23.524 26.353 hybrid contribution 0.883 -1.105 1.787 2.279 sum 7.452 -11.003 -21.737 25.477 Atomic orbital electron populations 1.21794 0.94249 1.02226 1.02580 1.20467 0.96492 0.91004 1.03584 1.20881 1.02121 0.98725 0.93567 1.22605 0.92378 0.88707 0.97863 1.67292 1.14760 1.08721 1.31225 1.19089 0.93166 0.84190 0.86326 1.84819 1.27492 1.19321 1.95431 1.21065 1.07961 0.95465 0.94784 1.17888 0.78934 0.86105 0.82559 1.90862 1.49302 1.17887 1.80586 1.47669 1.55095 1.12563 1.18003 1.21966 1.00872 0.81813 1.01714 1.22442 0.98903 0.97408 0.85066 1.23206 0.98141 0.84018 0.93883 0.89154 1.86614 1.40455 1.26902 1.80791 1.21307 0.92713 0.96437 0.89922 1.43694 1.17431 1.40015 1.30358 1.20832 0.90289 0.93934 0.93155 1.19198 1.31935 0.96246 0.89748 0.91416 1.25255 1.00383 0.96743 0.97342 1.70061 1.37015 1.25879 1.22649 0.86181 0.77390 0.80604 0.82363 1.20351 1.21782 1.21838 1.21812 0.92562 0.91769 0.99394 0.92424 0.91886 0.92269 0.90355 0.90366 0.81980 0.74191 0.91715 0.91851 0.90732 0.89223 0.90267 0.79444 0.93736 0.93237 0.96564 0.99317 0.92057 0.93873 0.83356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.89 37.16 0.37 -0.51 16 2 C -0.08 -0.40 6.08 -27.89 -0.17 -0.57 16 3 C -0.15 -1.17 5.14 -104.55 -0.54 -1.71 16 4 C 0.14 1.20 10.84 -17.49 -0.19 1.01 16 5 N -0.50 -5.76 10.37 -12.98 -0.13 -5.89 16 6 C 0.35 4.39 7.74 -16.61 -0.13 4.26 16 7 O -0.46 -5.79 12.54 -29.23 -0.37 -6.16 16 8 C -0.19 -2.27 4.98 -104.69 -0.52 -2.79 16 9 C 0.56 8.19 7.02 -12.47 -0.09 8.10 16 10 O -0.51 -9.66 16.06 -5.98 -0.10 -9.76 16 11 N -0.60 -7.45 2.84 -182.82 -0.52 -7.97 16 12 C 0.08 0.69 8.68 59.85 0.52 1.21 16 13 C 0.08 1.14 5.07 -4.05 -0.02 1.12 16 14 C 0.07 1.24 3.48 -26.73 -0.09 1.14 16 15 H 0.09 1.90 8.14 -51.93 -0.42 1.48 16 16 O -0.54 -9.59 11.80 -35.23 -0.42 -10.01 16 17 C 0.13 2.52 5.40 -4.04 -0.02 2.50 16 18 N -0.59 -15.20 2.87 -181.12 -0.52 -15.72 16 19 C 0.16 4.27 8.98 59.85 0.54 4.81 16 20 C -0.24 -6.61 9.09 -15.06 -0.14 -6.75 16 21 H 0.07 1.78 7.32 -52.49 -0.38 1.40 16 22 C 0.00 0.01 5.31 -17.43 -0.09 -0.08 16 23 N -0.91 -27.11 10.48 55.49 0.58 -26.53 16 24 Si 0.90 21.97 29.55 -169.99 -5.02 16.95 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 27 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 28 C -0.03 -0.28 7.53 -38.89 -0.29 -0.58 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.28 8.09 -51.93 -0.42 -0.14 16 33 H 0.08 0.36 8.09 -51.93 -0.42 -0.06 16 34 H 0.16 0.86 8.06 -52.49 -0.42 0.44 16 35 H 0.40 2.91 9.06 45.56 0.41 3.32 16 36 H 0.06 0.58 7.02 -51.93 -0.36 0.21 16 37 H 0.06 0.46 6.20 -51.93 -0.32 0.14 16 38 H 0.07 0.53 7.84 -51.93 -0.41 0.12 16 39 H 0.09 1.28 7.48 -51.93 -0.39 0.89 16 40 H 0.08 0.84 7.86 -51.93 -0.41 0.44 16 41 H 0.36 5.19 9.02 45.56 0.41 5.60 16 42 H 0.04 0.87 8.07 -51.93 -0.42 0.45 16 43 H 0.05 0.94 8.04 -51.93 -0.42 0.52 16 44 H 0.02 0.44 7.80 -51.93 -0.40 0.04 16 45 H -0.01 -0.28 8.10 -51.93 -0.42 -0.70 16 46 H 0.06 1.75 6.78 -51.93 -0.35 1.40 16 47 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 48 H 0.15 1.29 6.17 -52.49 -0.32 0.96 16 LS Contribution 394.97 15.07 5.95 5.95 Total: -1.00 -37.08 394.97 -7.29 -44.37 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -5.88 Total: 3.62 kcal Atomic # 6 Polarization: 12.02 SS G_CDS: -0.87 Total: 11.15 kcal Atomic # 7 Polarization: -55.52 SS G_CDS: -0.59 Total: -56.11 kcal Atomic # 8 Polarization: -25.04 SS G_CDS: -0.88 Total: -25.92 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -37.08 -7.29 -44.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677179506.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.406 kcal (2) G-P(sol) polarization free energy of solvation -37.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds