Wall clock time and date at job start Tue Mar 31 2020 21:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50693 * 109.47244 * 2 1 4 4 C 1.38356 * 120.27259 * 270.02530 * 3 2 1 5 5 N 1.31883 * 121.18769 * 179.97438 * 4 3 2 6 6 C 1.32238 * 121.79756 * 359.74638 * 5 4 3 7 7 O 1.35425 * 119.80259 * 180.26796 * 6 5 4 8 8 C 1.40279 * 120.39947 * 0.53982 * 6 5 4 9 9 C 1.47531 * 120.59542 * 179.72842 * 8 6 5 10 10 O 1.21589 * 120.00215 * 46.43310 * 9 8 6 11 11 N 1.34779 * 119.99605 * 226.43639 * 9 8 6 12 12 C 1.46500 * 120.00019 * 355.73201 * 11 9 8 13 13 C 1.46495 * 119.99895 * 175.74009 * 11 9 8 14 14 C 1.52994 * 109.47462 * 89.99548 * 13 11 9 15 15 H 1.09003 * 109.47416 * 305.00192 * 14 13 11 16 16 O 1.42902 * 109.46974 * 65.00261 * 14 13 11 17 17 C 1.53002 * 109.47603 * 185.00041 * 14 13 11 18 18 N 1.46497 * 109.47634 * 180.02562 * 17 14 13 19 19 C 1.46497 * 119.99866 * 270.00206 * 18 17 14 20 20 C 1.36942 * 119.99967 * 89.99613 * 18 17 14 21 21 H 1.07998 * 120.00181 * 330.45721 * 20 18 17 22 22 C 1.38808 * 119.99721 * 150.17729 * 20 18 17 23 23 N 1.31621 * 120.00078 * 2.11115 * 22 20 18 24 24 Si 1.86795 * 119.99938 * 182.11042 * 22 20 18 25 25 H 1.48501 * 109.47328 * 0.02562 * 24 22 20 26 26 H 1.48507 * 109.47151 * 120.00148 * 24 22 20 27 27 H 1.48498 * 109.47350 * 239.99935 * 24 22 20 28 28 C 1.38336 * 120.27055 * 90.00304 * 3 2 1 29 29 H 1.08993 * 109.47471 * 59.99166 * 1 2 3 30 30 H 1.08996 * 109.47641 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46468 * 299.99659 * 1 2 3 32 32 H 1.09004 * 109.46468 * 240.00341 * 2 1 3 33 33 H 1.08993 * 109.47471 * 120.00834 * 2 1 3 34 34 H 1.08001 * 119.41029 * 359.97438 * 4 3 2 35 35 H 0.96695 * 114.00427 * 270.27248 * 7 6 5 36 36 H 1.08990 * 109.47609 * 274.90082 * 12 11 9 37 37 H 1.09002 * 109.47151 * 34.90683 * 12 11 9 38 38 H 1.09007 * 109.46817 * 154.90201 * 12 11 9 39 39 H 1.09002 * 109.46979 * 329.99656 * 13 11 9 40 40 H 1.09000 * 109.47326 * 209.99723 * 13 11 9 41 41 H 0.96698 * 114.00566 * 59.99869 * 16 14 13 42 42 H 1.09003 * 109.47030 * 59.99883 * 17 14 13 43 43 H 1.09003 * 109.46858 * 300.00493 * 17 14 13 44 44 H 1.09002 * 109.46986 * 273.77960 * 19 18 17 45 45 H 1.08998 * 109.47019 * 33.77930 * 19 18 17 46 46 H 1.09000 * 109.47160 * 153.77777 * 19 18 17 47 47 H 0.97003 * 120.00300 * 179.97438 * 23 22 20 48 48 H 1.07999 * 120.82281 * 0.05037 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.2643 2.0785 -1.1949 5 7 2.7034 3.3219 -1.2160 6 6 2.9369 3.9973 -0.1033 7 8 3.3823 5.2744 -0.1721 8 6 2.7315 3.3971 1.1478 9 6 2.9963 4.1447 2.3918 10 8 2.5856 5.2823 2.5167 11 7 3.6937 3.5666 3.3899 12 6 4.1080 2.1658 3.2783 13 6 4.0372 4.3389 4.5864 14 6 2.9230 4.1933 5.6247 15 1 1.9711 4.4824 5.1793 16 8 2.8521 2.8340 6.0598 17 6 3.2209 5.0973 6.8227 18 7 2.1544 4.9574 7.8172 19 6 0.9808 5.8324 7.7607 20 6 2.2544 4.0087 8.7997 21 1 2.7982 3.0943 8.6140 22 6 1.6618 4.2249 10.0361 23 7 0.9686 5.3230 10.2507 24 14 1.8480 2.9573 11.3955 25 1 2.6687 1.8214 10.9042 26 1 2.5169 3.5809 12.5656 27 1 0.5071 2.4622 11.7978 28 6 2.2648 2.0782 1.1947 29 1 -0.3634 0.5139 -0.8898 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3632 0.5138 0.8901 32 1 1.8932 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8898 34 1 2.0826 1.5645 -2.1272 35 1 4.3457 5.3544 -0.1948 36 1 3.2970 1.5193 3.6131 37 1 4.3478 1.9396 2.2393 38 1 4.9876 1.9966 3.8994 39 1 4.1507 5.3899 4.3202 40 1 4.9730 3.9665 5.0030 41 1 3.6663 2.5084 6.4674 42 1 3.2750 6.1342 6.4909 43 1 4.1728 4.8082 7.2681 44 1 1.1911 6.7575 8.2975 45 1 0.7476 6.0607 6.7207 46 1 0.1304 5.3300 8.2218 47 1 0.5542 5.4739 11.1147 48 1 2.0916 1.5857 2.1402 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677179506.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:12 Heat of formation + Delta-G solvation = -88.091353 kcal Electronic energy + Delta-G solvation = -29945.811545 eV Core-core repulsion = 25808.226405 eV Total energy + Delta-G solvation = -4137.585140 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.10828 -40.50918 -38.85646 -38.45859 -36.84556 -36.02766 -35.21805 -33.62061 -33.23562 -31.05151 -30.10074 -28.17669 -27.85250 -27.28027 -25.33475 -24.99697 -23.95142 -22.66201 -22.15768 -20.63129 -19.83967 -18.82207 -18.41766 -18.21882 -17.50556 -17.27387 -16.92309 -16.82113 -16.28068 -16.02508 -15.74019 -15.24029 -15.08959 -14.98179 -14.79997 -14.76572 -14.40179 -14.33208 -13.96181 -13.87702 -13.62939 -13.29995 -13.09599 -13.06347 -12.88806 -12.81225 -12.56530 -12.52798 -12.34857 -12.22419 -12.12655 -11.87127 -11.83851 -11.80002 -11.35453 -11.20438 -10.88989 -10.57118 -10.46297 -9.87651 -9.63631 -8.58126 -7.80489 -5.31970 -0.41768 -0.00006 1.48624 1.49138 1.55160 1.59980 1.86601 2.40595 2.53668 2.61720 3.28673 3.36942 3.54812 3.62621 3.69151 3.77503 3.81777 4.00505 4.10091 4.18344 4.25313 4.27022 4.47042 4.50831 4.53656 4.55112 4.64206 4.70162 4.74510 4.80984 4.82236 4.89783 4.92924 4.96635 5.15573 5.20289 5.33074 5.35672 5.36272 5.46349 5.49057 5.63240 5.73216 6.23519 6.41688 6.47787 6.76022 7.00737 7.04149 7.20451 7.87703 8.38183 9.26002 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.015963 B = 0.002695 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.635859 B =10387.711917 C =11270.752631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.073 4.073 3 C -0.138 4.138 4 C 0.145 3.855 5 N -0.522 5.522 6 C 0.336 3.664 7 O -0.486 6.486 8 C -0.204 4.204 9 C 0.555 3.445 10 O -0.568 6.568 11 N -0.595 5.595 12 C 0.074 3.926 13 C 0.095 3.905 14 C 0.092 3.908 15 H 0.048 0.952 16 O -0.556 6.556 17 C 0.122 3.878 18 N -0.613 5.613 19 C 0.179 3.821 20 C -0.241 4.241 21 H 0.082 0.918 22 C -0.063 4.063 23 N -0.949 5.949 24 Si 0.973 3.027 25 H -0.257 1.257 26 H -0.294 1.294 27 H -0.299 1.299 28 C -0.029 4.029 29 H 0.056 0.944 30 H 0.076 0.924 31 H 0.039 0.961 32 H 0.104 0.896 33 H 0.089 0.911 34 H 0.198 0.802 35 H 0.415 0.585 36 H 0.065 0.935 37 H 0.080 0.920 38 H 0.098 0.902 39 H 0.078 0.922 40 H 0.119 0.881 41 H 0.378 0.622 42 H 0.045 0.955 43 H 0.069 0.931 44 H -0.005 1.005 45 H 0.003 0.997 46 H 0.031 0.969 47 H 0.245 0.755 48 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.723 -14.797 -24.101 29.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.111 4.111 3 C -0.140 4.140 4 C -0.012 4.012 5 N -0.240 5.240 6 C 0.157 3.843 7 O -0.296 6.296 8 C -0.210 4.210 9 C 0.343 3.657 10 O -0.447 6.447 11 N -0.326 5.326 12 C -0.067 4.067 13 C -0.029 4.029 14 C 0.028 3.972 15 H 0.066 0.934 16 O -0.362 6.362 17 C -0.005 4.005 18 N -0.336 5.336 19 C 0.033 3.967 20 C -0.371 4.371 21 H 0.100 0.900 22 C -0.257 4.257 23 N -0.596 5.596 24 Si 0.801 3.199 25 H -0.181 1.181 26 H -0.221 1.221 27 H -0.227 1.227 28 C -0.055 4.055 29 H 0.075 0.925 30 H 0.095 0.905 31 H 0.058 0.942 32 H 0.123 0.877 33 H 0.107 0.893 34 H 0.214 0.786 35 H 0.276 0.724 36 H 0.084 0.916 37 H 0.098 0.902 38 H 0.117 0.883 39 H 0.096 0.904 40 H 0.137 0.863 41 H 0.226 0.774 42 H 0.064 0.936 43 H 0.087 0.913 44 H 0.013 0.987 45 H 0.021 0.979 46 H 0.050 0.950 47 H 0.054 0.946 48 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 8.455 -13.478 -24.872 29.526 hybrid contribution 0.317 -0.089 2.080 2.106 sum 8.771 -13.567 -22.792 27.937 Atomic orbital electron populations 1.21811 0.94754 1.02842 1.01624 1.20556 0.95807 0.89268 1.05483 1.21165 1.00470 0.99820 0.92530 1.23265 0.90587 0.87767 0.99586 1.67346 1.15765 1.10081 1.30845 1.19226 0.94012 0.84240 0.86827 1.84762 1.29200 1.20095 1.95520 1.20913 1.10127 0.96515 0.93483 1.18336 0.78181 0.85594 0.83575 1.90824 1.51738 1.20393 1.81768 1.47730 1.54050 1.13964 1.16868 1.22221 1.01770 0.79245 1.03487 1.22242 0.98628 0.97568 0.84455 1.22683 0.97602 0.83396 0.93475 0.93362 1.86575 1.42047 1.26468 1.81136 1.21530 0.91926 0.97389 0.89665 1.43947 1.18408 1.39696 1.31501 1.20502 0.90052 0.92916 0.93217 1.19614 1.30743 0.96904 0.89860 0.89998 1.26096 1.00789 0.98901 0.99905 1.70252 1.38533 1.28092 1.22752 0.85103 0.76942 0.78722 0.79097 1.18086 1.22121 1.22657 1.21958 0.92108 0.90758 1.00632 0.92494 0.90524 0.94169 0.87734 0.89271 0.78564 0.72371 0.91625 0.90186 0.88322 0.90398 0.86275 0.77449 0.93648 0.91271 0.98653 0.97856 0.95021 0.94577 0.82553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.89 71.98 0.71 -0.67 16 2 C -0.07 -0.49 6.08 29.85 0.18 -0.31 16 3 C -0.14 -1.77 5.14 -19.82 -0.10 -1.87 16 4 C 0.15 2.08 10.84 84.71 0.92 3.00 16 5 N -0.52 -11.40 10.37 -308.00 -3.19 -14.60 16 6 C 0.34 8.38 7.74 85.13 0.66 9.04 16 7 O -0.49 -12.63 12.54 -76.43 -0.96 -13.59 16 8 C -0.20 -4.91 4.98 -19.91 -0.10 -5.01 16 9 C 0.56 16.44 7.02 86.69 0.61 17.05 16 10 O -0.57 -22.50 16.06 6.78 0.11 -22.39 16 11 N -0.60 -14.00 2.84 -850.57 -2.41 -16.41 16 12 C 0.07 1.07 8.68 127.77 1.11 2.18 16 13 C 0.09 2.39 5.07 86.38 0.44 2.82 16 14 C 0.09 3.13 3.48 30.59 0.11 3.24 16 15 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 16 O -0.56 -18.47 11.80 -148.98 -1.76 -20.23 16 17 C 0.12 4.83 5.40 86.38 0.47 5.30 16 18 N -0.61 -31.58 2.87 -726.94 -2.09 -33.67 16 19 C 0.18 9.71 8.98 127.77 1.15 10.86 16 20 C -0.24 -13.06 9.09 84.03 0.76 -12.29 16 21 H 0.08 4.13 7.32 -2.91 -0.02 4.11 16 22 C -0.06 -3.59 5.31 84.86 0.45 -3.14 16 23 N -0.95 -57.95 10.48 21.65 0.23 -57.72 16 24 Si 0.97 45.12 29.55 68.60 2.03 47.15 16 25 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 26 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 27 H -0.30 -14.13 7.11 99.48 0.71 -13.43 16 28 C -0.03 -0.50 7.53 22.72 0.17 -0.33 16 29 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.04 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.10 0.23 8.09 -2.39 -0.02 0.21 16 33 H 0.09 0.47 8.09 -2.39 -0.02 0.45 16 34 H 0.20 1.32 8.06 -2.91 -0.02 1.29 16 35 H 0.42 6.45 9.06 -74.06 -0.67 5.78 16 36 H 0.07 0.97 7.02 -2.39 -0.02 0.96 16 37 H 0.08 0.92 6.20 -2.39 -0.01 0.91 16 38 H 0.10 0.98 7.84 -2.38 -0.02 0.96 16 39 H 0.08 2.20 7.48 -2.39 -0.02 2.19 16 40 H 0.12 2.08 7.86 -2.39 -0.02 2.06 16 41 H 0.38 9.58 9.02 -74.06 -0.67 8.91 16 42 H 0.05 1.78 8.07 -2.39 -0.02 1.76 16 43 H 0.07 2.47 8.04 -2.39 -0.02 2.45 16 44 H 0.00 -0.28 7.80 -2.39 -0.02 -0.30 16 45 H 0.00 0.16 8.10 -2.39 -0.02 0.14 16 46 H 0.03 1.87 6.78 -2.39 -0.02 1.85 16 47 H 0.24 14.55 8.31 -92.71 -0.77 13.78 16 48 H 0.16 2.41 6.17 -2.91 -0.02 2.39 16 Total: -1.00 -83.88 394.97 -0.86 -84.74 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -0.35 Total: 16.86 kcal Atomic # 6 Polarization: 22.33 SS G_CDS: 7.53 Total: 29.87 kcal Atomic # 7 Polarization: -114.93 SS G_CDS: -7.47 Total: -122.40 kcal Atomic # 8 Polarization: -53.60 SS G_CDS: -2.61 Total: -56.21 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -83.88 -0.86 -84.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677179506.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.351 kcal (2) G-P(sol) polarization free energy of solvation -83.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds