Wall clock time and date at job start Tue Mar 31 2020 21:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30252 * 125.61683 * 2 1 4 4 C 1.34477 * 108.70033 * 180.02562 * 3 2 1 5 5 C 1.34326 * 107.67066 * 0.02562 * 4 3 2 6 6 C 1.50695 * 126.44870 * 180.02562 * 5 4 3 7 7 C 1.50694 * 109.47517 * 89.99433 * 6 5 4 8 8 O 1.21283 * 120.00094 * 0.02562 * 7 6 5 9 9 N 1.34773 * 120.00185 * 180.02562 * 7 6 5 10 10 C 1.46928 * 120.63318 * 0.02562 * 9 7 6 11 11 C 1.53197 * 108.77548 * 233.58741 * 10 9 7 12 12 C 1.53045 * 109.33431 * 305.34369 * 11 10 9 13 13 C 1.53106 * 109.50282 * 61.35366 * 12 11 10 14 14 H 1.09004 * 109.48894 * 58.61056 * 13 12 11 15 15 N 1.46501 * 109.51394 * 178.67803 * 13 12 11 16 16 C 1.36941 * 119.99854 * 59.87275 * 15 13 12 17 17 H 1.08002 * 120.00040 * 326.14149 * 16 15 13 18 18 C 1.38805 * 120.00227 * 146.14665 * 16 15 13 19 19 N 1.31619 * 119.99891 * 337.65543 * 18 16 15 20 20 Si 1.86799 * 120.00482 * 157.65770 * 18 16 15 21 21 H 1.48502 * 109.46887 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47282 * 119.99538 * 20 18 16 23 23 H 1.48500 * 109.47261 * 240.00051 * 20 18 16 24 24 C 1.46495 * 120.00092 * 239.86717 * 15 13 12 25 25 C 1.53004 * 109.46848 * 84.44264 * 24 15 13 26 26 O 1.42896 * 109.47169 * 64.99981 * 25 24 15 27 27 C 1.46936 * 120.63187 * 179.97438 * 9 7 6 28 28 O 1.33963 * 125.61963 * 180.33078 * 2 1 3 29 29 H 1.09003 * 109.46920 * 89.97620 * 1 2 3 30 30 H 1.09005 * 109.47383 * 209.97071 * 1 2 3 31 31 H 1.08998 * 109.47541 * 329.97536 * 1 2 3 32 32 H 1.08003 * 126.16598 * 180.02562 * 4 3 2 33 33 H 1.09007 * 109.46876 * 329.99597 * 6 5 4 34 34 H 1.09005 * 109.47507 * 210.00230 * 6 5 4 35 35 H 1.08998 * 109.58447 * 113.79842 * 10 9 7 36 36 H 1.08992 * 109.58292 * 353.37098 * 10 9 7 37 37 H 1.08992 * 109.49737 * 65.31563 * 11 10 9 38 38 H 1.09000 * 109.49213 * 185.38039 * 11 10 9 39 39 H 1.09002 * 109.45279 * 181.40090 * 12 11 10 40 40 H 1.08999 * 109.46237 * 301.36272 * 12 11 10 41 41 H 0.97004 * 120.00208 * 180.02562 * 19 18 16 42 42 H 1.09000 * 109.47384 * 204.43600 * 24 15 13 43 43 H 1.08997 * 109.47462 * 324.44112 * 24 15 13 44 44 H 1.09007 * 109.46978 * 185.00039 * 25 24 15 45 45 H 1.09006 * 109.46860 * 304.99578 * 25 24 15 46 46 H 0.96703 * 113.99884 * 180.02562 * 26 25 24 47 47 H 1.09000 * 109.58484 * 246.20329 * 27 9 7 48 48 H 1.09005 * 109.58374 * 6.62883 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2655 1.0589 0.0000 4 6 3.5521 0.6676 -0.0006 5 6 3.5698 -0.6756 -0.0015 6 6 4.7936 -1.5548 -0.0018 7 6 5.2014 -1.8488 1.4188 8 8 4.5610 -1.3900 2.3409 9 7 6.2778 -2.6217 1.6647 10 6 7.0640 -3.1843 0.5583 11 6 7.1736 -4.7000 0.7521 12 6 7.7453 -4.9932 2.1412 13 6 6.8017 -4.4359 3.2103 14 1 5.8167 -4.8890 3.0979 15 7 7.3327 -4.7440 4.5405 16 6 8.5661 -4.2777 4.9101 17 1 9.3514 -4.1857 4.1743 18 6 8.8072 -3.9234 6.2303 19 7 7.8031 -3.6093 7.0212 20 14 10.5565 -3.8922 6.8847 21 1 11.4964 -4.2838 5.8037 22 1 10.8849 -2.5224 7.3546 23 1 10.6789 -4.8464 8.0161 24 6 6.5443 -5.5507 5.4752 25 6 6.7745 -7.0356 5.1869 26 8 8.1377 -7.3677 5.4576 27 6 6.6882 -2.9168 3.0444 28 8 2.2872 -1.0890 -0.0063 29 1 -0.3633 0.0004 -1.0277 30 1 -0.3634 -0.8903 0.5134 31 1 -0.3634 0.8897 0.5142 32 1 4.4156 1.3163 -0.0003 33 1 5.6081 -1.0436 -0.5153 34 1 4.5696 -2.4893 -0.5164 35 1 8.0607 -2.7431 0.5569 36 1 6.5668 -2.9720 -0.3881 37 1 6.1852 -5.1506 0.6629 38 1 7.8337 -5.1172 -0.0084 39 1 7.8474 -6.0705 2.2717 40 1 8.7231 -4.5214 2.2385 41 1 7.9715 -3.3613 7.9438 42 1 6.8516 -5.3271 6.4968 43 1 5.4866 -5.3168 5.3544 44 1 6.1216 -7.6345 5.8220 45 1 6.5513 -7.2413 4.1399 46 1 8.3560 -8.2958 5.2961 47 1 7.6543 -2.4537 3.2452 48 1 5.9429 -2.5279 3.7383 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689204815.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:24 Heat of formation + Delta-G solvation = -33.829391 kcal Electronic energy + Delta-G solvation = -30247.239455 eV Core-core repulsion = 26112.007290 eV Total energy + Delta-G solvation = -4135.232165 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.36386 -39.90590 -37.55405 -36.19620 -34.77704 -34.64910 -33.28334 -32.26761 -31.26356 -30.69949 -29.51369 -27.34311 -26.30788 -24.72018 -23.98732 -22.51091 -22.33268 -21.30072 -20.66592 -19.83706 -18.74887 -17.36989 -17.02289 -16.62088 -16.49960 -16.31848 -15.57794 -15.33351 -14.83812 -14.52772 -14.26912 -14.13828 -13.95248 -13.68514 -13.58003 -13.34310 -13.13946 -13.05707 -12.86530 -12.63538 -12.58101 -12.52596 -12.05205 -11.93214 -11.38017 -11.28794 -11.22887 -10.89218 -10.76356 -10.65325 -10.58078 -10.47709 -10.13826 -10.03163 -9.87176 -9.66032 -9.57215 -9.10500 -8.69692 -8.42759 -8.25645 -6.58109 -5.72192 -3.23808 1.36139 2.50689 2.64088 2.78139 3.29857 3.43936 3.52183 3.54329 3.96721 4.49612 4.54288 4.61945 4.83556 4.91253 4.92958 5.10175 5.13729 5.15153 5.21794 5.29442 5.31369 5.38979 5.41874 5.48722 5.65744 5.76464 5.80639 5.89910 5.93764 6.03406 6.07359 6.14756 6.27487 6.28330 6.29877 6.51707 6.60440 6.65181 6.74383 6.84368 7.04725 7.06942 7.67164 7.68417 7.70682 7.87760 8.37049 8.44148 8.61318 9.22503 9.88218 10.40864 11.30491 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.015943 B = 0.002816 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.823853 B = 9940.490387 C =10177.960144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.186 3.814 3 N -0.484 5.484 4 C -0.027 4.027 5 C -0.023 4.023 6 C -0.056 4.056 7 C 0.509 3.491 8 O -0.533 6.533 9 N -0.604 5.604 10 C 0.106 3.894 11 C -0.133 4.133 12 C -0.126 4.126 13 C 0.166 3.834 14 H 0.048 0.952 15 N -0.568 5.568 16 C -0.239 4.239 17 H 0.060 0.940 18 C 0.014 3.986 19 N -0.891 5.891 20 Si 0.899 3.101 21 H -0.278 1.278 22 H -0.295 1.295 23 H -0.289 1.289 24 C 0.141 3.859 25 C 0.061 3.939 26 O -0.544 6.544 27 C 0.107 3.893 28 O -0.197 6.197 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.100 0.900 32 H 0.182 0.818 33 H 0.125 0.875 34 H 0.111 0.889 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.060 0.940 38 H 0.068 0.932 39 H 0.058 0.942 40 H 0.066 0.934 41 H 0.253 0.747 42 H 0.109 0.891 43 H 0.036 0.964 44 H 0.020 0.980 45 H 0.021 0.979 46 H 0.349 0.651 47 H 0.077 0.923 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.154 -0.498 -17.620 19.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.021 4.021 3 N -0.214 5.214 4 C -0.165 4.165 5 C -0.076 4.076 6 C -0.096 4.096 7 C 0.295 3.705 8 O -0.409 6.409 9 N -0.338 5.338 10 C -0.017 4.017 11 C -0.171 4.171 12 C -0.166 4.166 13 C 0.057 3.943 14 H 0.066 0.934 15 N -0.286 5.286 16 C -0.369 4.369 17 H 0.077 0.923 18 C -0.185 4.185 19 N -0.534 5.534 20 Si 0.729 3.271 21 H -0.203 1.203 22 H -0.222 1.222 23 H -0.216 1.216 24 C 0.014 3.986 25 C -0.020 4.020 26 O -0.345 6.345 27 C -0.016 4.016 28 O -0.084 6.084 29 H 0.109 0.891 30 H 0.106 0.894 31 H 0.118 0.882 32 H 0.199 0.801 33 H 0.142 0.858 34 H 0.129 0.871 35 H 0.089 0.911 36 H 0.094 0.906 37 H 0.079 0.921 38 H 0.087 0.913 39 H 0.077 0.923 40 H 0.085 0.915 41 H 0.063 0.937 42 H 0.127 0.873 43 H 0.054 0.946 44 H 0.038 0.962 45 H 0.039 0.961 46 H 0.192 0.808 47 H 0.095 0.905 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.727 1.023 -16.753 18.918 hybrid contribution 1.291 -1.422 0.253 1.937 sum -7.436 -0.398 -16.501 18.103 Atomic orbital electron populations 1.20232 0.81443 1.05198 1.04388 1.26213 0.96398 0.78697 1.00754 1.70405 1.02071 1.30319 1.18608 1.22951 0.95092 0.92767 1.05721 1.22527 0.83135 0.94841 1.07110 1.20139 0.91977 1.00311 0.97176 1.20207 0.80757 0.79279 0.90278 1.90757 1.52882 1.51339 1.45932 1.48332 1.27690 1.49000 1.08812 1.21772 0.96333 0.94684 0.88948 1.21935 1.01414 0.94761 0.99027 1.21988 1.00664 1.01132 0.92780 1.20662 0.94527 0.91748 0.87314 0.93404 1.43721 1.17859 1.56527 1.10540 1.18830 0.87167 1.37321 0.93577 0.92251 1.24989 0.96808 0.98358 0.98382 1.69982 1.29973 1.46680 1.06752 0.86300 0.85180 0.76708 0.78864 1.20348 1.22206 1.21620 1.21088 0.92651 0.85235 0.99607 1.23067 0.82309 1.00261 0.96315 1.86852 1.27909 1.29026 1.90679 1.22408 1.01430 0.98501 0.79250 1.84344 1.16532 1.37766 1.69775 0.89115 0.89359 0.88152 0.80094 0.85756 0.87091 0.91056 0.90608 0.92136 0.91298 0.92294 0.91489 0.93747 0.87321 0.94613 0.96215 0.96093 0.80843 0.90475 0.89464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.42 10.51 36.01 0.38 -0.04 16 2 C 0.19 2.40 8.34 -12.95 -0.11 2.29 16 3 N -0.48 -7.07 11.29 -11.10 -0.13 -7.19 16 4 C -0.03 -0.37 11.80 -17.77 -0.21 -0.58 16 5 C -0.02 -0.31 5.88 -35.69 -0.21 -0.52 16 6 C -0.06 -0.61 4.60 -29.04 -0.13 -0.74 16 7 C 0.51 8.11 7.69 -10.99 -0.08 8.03 16 8 O -0.53 -11.23 15.45 5.56 0.09 -11.14 16 9 N -0.60 -9.35 2.97 -172.74 -0.51 -9.86 16 10 C 0.11 1.18 6.34 -3.71 -0.02 1.16 16 11 C -0.13 -1.58 6.08 -26.61 -0.16 -1.75 16 12 C -0.13 -2.08 5.12 -26.65 -0.14 -2.22 16 13 C 0.17 3.28 2.78 -67.76 -0.19 3.09 16 14 H 0.05 0.95 7.87 -51.93 -0.41 0.54 16 15 N -0.57 -13.40 2.35 -165.46 -0.39 -13.79 16 16 C -0.24 -6.27 7.95 -15.06 -0.12 -6.39 16 17 H 0.06 1.56 6.86 -52.49 -0.36 1.20 16 18 C 0.01 0.39 4.91 -17.43 -0.09 0.30 16 19 N -0.89 -25.67 11.34 55.49 0.63 -25.05 16 20 Si 0.90 22.15 29.61 -169.99 -5.03 17.12 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 23 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 24 C 0.14 3.28 5.57 -4.04 -0.02 3.26 16 25 C 0.06 1.19 7.39 37.16 0.27 1.46 16 26 O -0.54 -11.20 13.40 -35.23 -0.47 -11.67 16 27 C 0.11 2.13 5.77 -3.68 -0.02 2.11 16 28 O -0.20 -2.81 10.78 5.36 0.06 -2.75 16 29 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.18 2.03 8.06 -52.48 -0.42 1.61 16 33 H 0.12 0.93 7.94 -51.92 -0.41 0.52 16 34 H 0.11 0.96 7.69 -51.93 -0.40 0.56 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.08 0.58 5.93 -51.93 -0.31 0.27 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.07 1.20 7.03 -51.93 -0.36 0.84 16 41 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 42 H 0.11 2.94 5.34 -51.93 -0.28 2.67 16 43 H 0.04 0.80 8.04 -51.93 -0.42 0.38 16 44 H 0.02 0.34 8.14 -51.92 -0.42 -0.08 16 45 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.35 5.19 9.12 45.56 0.42 5.61 16 47 H 0.08 1.67 7.51 -51.93 -0.39 1.28 16 48 H 0.09 2.06 7.01 -51.93 -0.36 1.70 16 LS Contribution 389.23 15.07 5.87 5.87 Total: -1.00 -35.96 389.23 -7.40 -43.35 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -6.65 Total: 5.66 kcal Atomic # 6 Polarization: 10.31 SS G_CDS: -0.85 Total: 9.46 kcal Atomic # 7 Polarization: -55.49 SS G_CDS: -0.40 Total: -55.89 kcal Atomic # 8 Polarization: -25.23 SS G_CDS: -0.33 Total: -25.56 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.03 Total: 17.12 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.96 -7.40 -43.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689204815.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.524 kcal (2) G-P(sol) polarization free energy of solvation -35.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds