Wall clock time and date at job start Tue Mar 31 2020 21:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30252 * 125.61683 * 2 1 4 4 C 1.34477 * 108.70033 * 180.02562 * 3 2 1 5 5 C 1.34326 * 107.67066 * 0.02562 * 4 3 2 6 6 C 1.50695 * 126.44870 * 180.02562 * 5 4 3 7 7 C 1.50694 * 109.47517 * 89.99433 * 6 5 4 8 8 O 1.21283 * 120.00094 * 0.02562 * 7 6 5 9 9 N 1.34773 * 120.00185 * 180.02562 * 7 6 5 10 10 C 1.46928 * 120.63318 * 0.02562 * 9 7 6 11 11 C 1.53197 * 108.77548 * 233.58741 * 10 9 7 12 12 C 1.53045 * 109.33431 * 305.34369 * 11 10 9 13 13 C 1.53106 * 109.50282 * 61.35366 * 12 11 10 14 14 H 1.09004 * 109.48894 * 58.61056 * 13 12 11 15 15 N 1.46501 * 109.51394 * 178.67803 * 13 12 11 16 16 C 1.36941 * 119.99854 * 59.87275 * 15 13 12 17 17 H 1.08002 * 120.00040 * 326.14149 * 16 15 13 18 18 C 1.38805 * 120.00227 * 146.14665 * 16 15 13 19 19 N 1.31619 * 119.99891 * 337.65543 * 18 16 15 20 20 Si 1.86799 * 120.00482 * 157.65770 * 18 16 15 21 21 H 1.48502 * 109.46887 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47282 * 119.99538 * 20 18 16 23 23 H 1.48500 * 109.47261 * 240.00051 * 20 18 16 24 24 C 1.46495 * 120.00092 * 239.86717 * 15 13 12 25 25 C 1.53004 * 109.46848 * 84.44264 * 24 15 13 26 26 O 1.42896 * 109.47169 * 64.99981 * 25 24 15 27 27 C 1.46936 * 120.63187 * 179.97438 * 9 7 6 28 28 O 1.33963 * 125.61963 * 180.33078 * 2 1 3 29 29 H 1.09003 * 109.46920 * 89.97620 * 1 2 3 30 30 H 1.09005 * 109.47383 * 209.97071 * 1 2 3 31 31 H 1.08998 * 109.47541 * 329.97536 * 1 2 3 32 32 H 1.08003 * 126.16598 * 180.02562 * 4 3 2 33 33 H 1.09007 * 109.46876 * 329.99597 * 6 5 4 34 34 H 1.09005 * 109.47507 * 210.00230 * 6 5 4 35 35 H 1.08998 * 109.58447 * 113.79842 * 10 9 7 36 36 H 1.08992 * 109.58292 * 353.37098 * 10 9 7 37 37 H 1.08992 * 109.49737 * 65.31563 * 11 10 9 38 38 H 1.09000 * 109.49213 * 185.38039 * 11 10 9 39 39 H 1.09002 * 109.45279 * 181.40090 * 12 11 10 40 40 H 1.08999 * 109.46237 * 301.36272 * 12 11 10 41 41 H 0.97004 * 120.00208 * 180.02562 * 19 18 16 42 42 H 1.09000 * 109.47384 * 204.43600 * 24 15 13 43 43 H 1.08997 * 109.47462 * 324.44112 * 24 15 13 44 44 H 1.09007 * 109.46978 * 185.00039 * 25 24 15 45 45 H 1.09006 * 109.46860 * 304.99578 * 25 24 15 46 46 H 0.96703 * 113.99884 * 180.02562 * 26 25 24 47 47 H 1.09000 * 109.58484 * 246.20329 * 27 9 7 48 48 H 1.09005 * 109.58374 * 6.62883 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2655 1.0589 0.0000 4 6 3.5521 0.6676 -0.0006 5 6 3.5698 -0.6756 -0.0015 6 6 4.7936 -1.5548 -0.0018 7 6 5.2014 -1.8488 1.4188 8 8 4.5610 -1.3900 2.3409 9 7 6.2778 -2.6217 1.6647 10 6 7.0640 -3.1843 0.5583 11 6 7.1736 -4.7000 0.7521 12 6 7.7453 -4.9932 2.1412 13 6 6.8017 -4.4359 3.2103 14 1 5.8167 -4.8890 3.0979 15 7 7.3327 -4.7440 4.5405 16 6 8.5661 -4.2777 4.9101 17 1 9.3514 -4.1857 4.1743 18 6 8.8072 -3.9234 6.2303 19 7 7.8031 -3.6093 7.0212 20 14 10.5565 -3.8922 6.8847 21 1 11.4964 -4.2838 5.8037 22 1 10.8849 -2.5224 7.3546 23 1 10.6789 -4.8464 8.0161 24 6 6.5443 -5.5507 5.4752 25 6 6.7745 -7.0356 5.1869 26 8 8.1377 -7.3677 5.4576 27 6 6.6882 -2.9168 3.0444 28 8 2.2872 -1.0890 -0.0063 29 1 -0.3633 0.0004 -1.0277 30 1 -0.3634 -0.8903 0.5134 31 1 -0.3634 0.8897 0.5142 32 1 4.4156 1.3163 -0.0003 33 1 5.6081 -1.0436 -0.5153 34 1 4.5696 -2.4893 -0.5164 35 1 8.0607 -2.7431 0.5569 36 1 6.5668 -2.9720 -0.3881 37 1 6.1852 -5.1506 0.6629 38 1 7.8337 -5.1172 -0.0084 39 1 7.8474 -6.0705 2.2717 40 1 8.7231 -4.5214 2.2385 41 1 7.9715 -3.3613 7.9438 42 1 6.8516 -5.3271 6.4968 43 1 5.4866 -5.3168 5.3544 44 1 6.1216 -7.6345 5.8220 45 1 6.5513 -7.2413 4.1399 46 1 8.3560 -8.2958 5.2961 47 1 7.6543 -2.4537 3.2452 48 1 5.9429 -2.5279 3.7383 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689204815.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:23 Heat of formation + Delta-G solvation = -63.003920 kcal Electronic energy + Delta-G solvation = -30248.504558 eV Core-core repulsion = 26112.007290 eV Total energy + Delta-G solvation = -4136.497268 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -44.33298 -41.19962 -39.07388 -37.71172 -36.28316 -35.77756 -34.33950 -33.72319 -32.84139 -31.75480 -30.86947 -29.07804 -27.35512 -26.09865 -25.63139 -23.80946 -23.39696 -22.38022 -22.09764 -21.44690 -19.98930 -18.53475 -18.30114 -18.17742 -17.94634 -17.47930 -16.83093 -16.80744 -16.42055 -16.06146 -15.60373 -15.28142 -15.17732 -15.07564 -14.89869 -14.60231 -14.22902 -14.08988 -14.04810 -13.94447 -13.78463 -13.43538 -13.32803 -13.12460 -13.02774 -12.95674 -12.79228 -12.42782 -12.29773 -12.23237 -11.88352 -11.78863 -11.66886 -11.61220 -11.56776 -11.27266 -10.96714 -10.65596 -10.43514 -9.66599 -9.63842 -8.53674 -7.76838 -5.30606 0.38437 1.44558 1.48759 1.56362 1.56752 1.58067 1.70240 2.11327 2.56428 3.15372 3.34873 3.49779 3.54713 3.70416 3.78933 4.01761 4.08676 4.13683 4.14791 4.17848 4.32677 4.35464 4.47251 4.52142 4.61441 4.63353 4.65304 4.68675 4.70056 4.81087 4.92749 4.93904 4.99306 5.01468 5.02541 5.04362 5.12373 5.23795 5.38514 5.48376 5.53368 5.62336 5.73839 5.81020 6.46656 6.50818 6.70425 7.14347 7.18457 7.24512 7.92844 8.41689 9.22362 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.015943 B = 0.002816 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.823853 B = 9940.490387 C =10177.960144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.182 3.818 3 N -0.518 5.518 4 C -0.043 4.043 5 C -0.039 4.039 6 C -0.041 4.041 7 C 0.503 3.497 8 O -0.596 6.596 9 N -0.602 5.602 10 C 0.099 3.901 11 C -0.124 4.124 12 C -0.116 4.116 13 C 0.166 3.834 14 H 0.046 0.954 15 N -0.582 5.582 16 C -0.223 4.223 17 H 0.059 0.941 18 C -0.042 4.042 19 N -0.926 5.926 20 Si 0.951 3.049 21 H -0.267 1.267 22 H -0.299 1.299 23 H -0.298 1.298 24 C 0.134 3.866 25 C 0.074 3.926 26 O -0.572 6.572 27 C 0.123 3.877 28 O -0.212 6.212 29 H 0.117 0.883 30 H 0.100 0.900 31 H 0.107 0.893 32 H 0.198 0.802 33 H 0.169 0.831 34 H 0.147 0.853 35 H 0.080 0.920 36 H 0.128 0.872 37 H 0.068 0.932 38 H 0.106 0.894 39 H 0.054 0.946 40 H 0.050 0.950 41 H 0.245 0.755 42 H 0.070 0.930 43 H 0.032 0.968 44 H 0.044 0.956 45 H 0.040 0.960 46 H 0.376 0.624 47 H 0.052 0.948 48 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.947 -1.882 -21.590 23.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.024 4.024 3 N -0.248 5.248 4 C -0.181 4.181 5 C -0.092 4.092 6 C -0.080 4.080 7 C 0.292 3.708 8 O -0.477 6.477 9 N -0.334 5.334 10 C -0.022 4.022 11 C -0.162 4.162 12 C -0.155 4.155 13 C 0.058 3.942 14 H 0.065 0.935 15 N -0.302 5.302 16 C -0.353 4.353 17 H 0.076 0.924 18 C -0.238 4.238 19 N -0.572 5.572 20 Si 0.782 3.218 21 H -0.191 1.191 22 H -0.227 1.227 23 H -0.225 1.225 24 C 0.008 3.992 25 C -0.006 4.006 26 O -0.378 6.378 27 C -0.001 4.001 28 O -0.100 6.100 29 H 0.136 0.864 30 H 0.119 0.881 31 H 0.126 0.874 32 H 0.214 0.786 33 H 0.186 0.814 34 H 0.164 0.836 35 H 0.098 0.902 36 H 0.146 0.854 37 H 0.087 0.913 38 H 0.124 0.876 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.054 0.946 42 H 0.088 0.912 43 H 0.050 0.950 44 H 0.062 0.938 45 H 0.058 0.942 46 H 0.222 0.778 47 H 0.070 0.930 48 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -8.487 -0.401 -20.802 22.471 hybrid contribution 1.145 -0.987 1.452 2.096 sum -7.342 -1.388 -19.351 20.743 Atomic orbital electron populations 1.20528 0.78238 1.06123 1.06389 1.27273 0.98094 0.78113 0.98939 1.70411 1.02823 1.31370 1.20202 1.23366 0.95512 0.93558 1.05686 1.22984 0.83668 0.95255 1.07301 1.20277 0.92121 1.02174 0.93447 1.21165 0.79732 0.77879 0.92002 1.90737 1.54877 1.53657 1.48451 1.48348 1.28151 1.49023 1.07884 1.22202 0.96902 0.93971 0.89151 1.21914 1.02341 0.95447 0.96502 1.21822 0.98949 1.00249 0.94489 1.20822 0.95332 0.91480 0.86531 0.93532 1.43926 1.17409 1.57004 1.11878 1.18983 0.88169 1.34919 0.93247 0.92364 1.25606 0.99423 0.99622 0.99106 1.70130 1.31459 1.49123 1.06512 0.85457 0.82212 0.76014 0.78164 1.19091 1.22667 1.22529 1.21004 0.92299 0.88163 0.97757 1.22774 0.82515 0.97477 0.97839 1.86763 1.28345 1.31664 1.90981 1.21817 0.98386 0.98297 0.81642 1.84349 1.17110 1.38435 1.70087 0.86429 0.88118 0.87443 0.78551 0.81375 0.83568 0.90181 0.85415 0.91286 0.87615 0.92720 0.93139 0.94614 0.91180 0.94966 0.93822 0.94217 0.77797 0.92998 0.94455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.75 10.51 71.24 0.75 0.00 16 2 C 0.18 4.54 8.34 88.34 0.74 5.27 16 3 N -0.52 -14.91 11.29 -303.84 -3.43 -18.34 16 4 C -0.04 -1.16 11.80 83.39 0.98 -0.17 16 5 C -0.04 -1.00 5.88 24.79 0.15 -0.85 16 6 C -0.04 -0.75 4.60 29.10 0.13 -0.61 16 7 C 0.50 15.47 7.69 87.66 0.67 16.14 16 8 O -0.60 -26.00 15.45 -3.04 -0.05 -26.04 16 9 N -0.60 -17.73 2.97 -818.80 -2.43 -20.16 16 10 C 0.10 1.76 6.34 86.36 0.55 2.31 16 11 C -0.12 -2.38 6.08 30.68 0.19 -2.20 16 12 C -0.12 -3.58 5.12 30.64 0.16 -3.42 16 13 C 0.17 6.57 2.78 45.10 0.13 6.70 16 14 H 0.05 1.84 7.87 -2.38 -0.02 1.82 16 15 N -0.58 -28.18 2.35 -677.41 -1.59 -29.77 16 16 C -0.22 -11.93 7.95 84.03 0.67 -11.27 16 17 H 0.06 3.10 6.86 -2.91 -0.02 3.08 16 18 C -0.04 -2.39 4.91 84.86 0.42 -1.97 16 19 N -0.93 -56.20 11.34 21.65 0.25 -55.96 16 20 Si 0.95 46.77 29.61 68.60 2.03 48.80 16 21 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 22 H -0.30 -14.74 7.11 99.48 0.71 -14.04 16 23 H -0.30 -14.91 7.11 99.48 0.71 -14.21 16 24 C 0.13 6.44 5.57 86.38 0.48 6.92 16 25 C 0.07 2.81 7.39 71.98 0.53 3.34 16 26 O -0.57 -22.97 13.40 -148.98 -2.00 -24.96 16 27 C 0.12 5.10 5.77 86.37 0.50 5.59 16 28 O -0.21 -5.79 10.78 -3.75 -0.04 -5.83 16 29 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.10 1.11 8.14 -2.38 -0.02 1.09 16 31 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.20 4.23 8.06 -2.91 -0.02 4.21 16 33 H 0.17 1.58 7.94 -2.38 -0.02 1.56 16 34 H 0.15 1.69 7.69 -2.38 -0.02 1.67 16 35 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.13 1.05 5.93 -2.39 -0.01 1.04 16 37 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.05 1.73 7.03 -2.39 -0.02 1.71 16 41 H 0.24 14.57 8.31 -92.71 -0.77 13.80 16 42 H 0.07 3.98 5.34 -2.39 -0.01 3.97 16 43 H 0.03 1.51 8.04 -2.39 -0.02 1.49 16 44 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 45 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16 46 H 0.38 10.40 9.12 -74.06 -0.68 9.72 16 47 H 0.05 2.36 7.51 -2.39 -0.02 2.35 16 48 H 0.04 1.89 7.01 -2.38 -0.02 1.87 16 Total: -1.00 -86.43 389.23 0.07 -86.36 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: 0.30 Total: 20.13 kcal Atomic # 6 Polarization: 18.73 SS G_CDS: 7.04 Total: 25.77 kcal Atomic # 7 Polarization: -117.02 SS G_CDS: -7.21 Total: -124.23 kcal Atomic # 8 Polarization: -54.75 SS G_CDS: -2.08 Total: -56.83 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.80 kcal Total: -86.43 0.07 -86.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689204815.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.352 kcal (2) G-P(sol) polarization free energy of solvation -86.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds