Wall clock time and date at job start Tue Mar 31 2020 21:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30255 * 125.62050 * 2 1 4 4 C 1.34481 * 108.69959 * 179.73755 * 3 2 1 5 5 C 1.34332 * 107.66868 * 0.39091 * 4 3 2 6 6 C 1.50706 * 126.44201 * 179.88418 * 5 4 3 7 7 C 1.50697 * 109.47285 * 89.70889 * 6 5 4 8 8 O 1.21286 * 119.99961 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99910 * 179.97438 * 7 6 5 10 10 C 1.46921 * 120.62760 * 359.97438 * 9 7 6 11 11 C 1.53192 * 108.77332 * 126.37086 * 10 9 7 12 12 C 1.53047 * 109.31402 * 54.63349 * 11 10 9 13 13 C 1.53045 * 109.53673 * 298.63577 * 12 11 10 14 14 H 1.09005 * 109.49960 * 301.38463 * 13 12 11 15 15 N 1.46498 * 109.49673 * 181.31721 * 13 12 11 16 16 C 1.36940 * 119.99727 * 305.16729 * 15 13 12 17 17 H 1.07998 * 120.00402 * 321.75518 * 16 15 13 18 18 C 1.38814 * 119.99484 * 141.75589 * 16 15 13 19 19 N 1.31618 * 119.99910 * 156.81872 * 18 16 15 20 20 Si 1.86804 * 120.00227 * 336.81382 * 18 16 15 21 21 H 1.48501 * 109.46988 * 95.30432 * 20 18 16 22 22 H 1.48494 * 109.47260 * 215.30566 * 20 18 16 23 23 H 1.48498 * 109.47173 * 335.30867 * 20 18 16 24 24 C 1.46499 * 119.99901 * 125.17517 * 15 13 12 25 25 C 1.52991 * 109.47705 * 89.99825 * 24 15 13 26 26 O 1.42900 * 109.47110 * 64.99373 * 25 24 15 27 27 C 1.46927 * 120.62706 * 179.72224 * 9 7 6 28 28 O 1.33972 * 125.61893 * 179.97438 * 2 1 3 29 29 H 1.09000 * 109.47293 * 270.02658 * 1 2 3 30 30 H 1.09003 * 109.47004 * 30.03079 * 1 2 3 31 31 H 1.09001 * 109.47177 * 150.02070 * 1 2 3 32 32 H 1.08000 * 126.16308 * 180.27333 * 4 3 2 33 33 H 1.08994 * 109.46862 * 209.71068 * 6 5 4 34 34 H 1.08999 * 109.46606 * 329.70662 * 6 5 4 35 35 H 1.08996 * 109.58919 * 246.15011 * 10 9 7 36 36 H 1.08995 * 109.58830 * 6.44067 * 10 9 7 37 37 H 1.09001 * 109.50224 * 174.58426 * 11 10 9 38 38 H 1.09004 * 109.49848 * 294.68185 * 11 10 9 39 39 H 1.08997 * 109.45770 * 58.65602 * 12 11 10 40 40 H 1.08997 * 109.46072 * 178.63108 * 12 11 10 41 41 H 0.97002 * 120.00371 * 179.97438 * 19 18 16 42 42 H 1.09007 * 109.46689 * 209.99854 * 24 15 13 43 43 H 1.08999 * 109.47404 * 329.99134 * 24 15 13 44 44 H 1.08998 * 109.47874 * 184.99818 * 25 24 15 45 45 H 1.09004 * 109.46991 * 305.00058 * 25 24 15 46 46 H 0.96700 * 113.99960 * 179.97438 * 26 25 24 47 47 H 1.08995 * 109.58654 * 353.41674 * 27 9 7 48 48 H 1.08997 * 109.58607 * 113.84464 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5522 0.6674 0.0058 5 6 3.5698 -0.6758 0.0008 6 6 4.7937 -1.5550 0.0019 7 6 5.2007 -1.8477 1.4230 8 8 4.5602 -1.3872 2.3443 9 7 6.2764 -2.6212 1.6703 10 6 7.0618 -3.1866 0.5648 11 6 8.5327 -2.8058 0.7599 12 6 8.9913 -3.2531 2.1498 13 6 8.1613 -2.5369 3.2177 14 1 8.2762 -1.4588 3.1054 15 7 8.6220 -2.9418 4.5481 16 6 8.6709 -4.2692 4.8810 17 1 7.8951 -4.9399 4.5423 18 6 9.7177 -4.7527 5.6539 19 7 9.5654 -5.8593 6.3499 20 14 11.3428 -3.8328 5.7059 21 1 11.3641 -2.9321 6.8864 22 1 12.4596 -4.8063 5.8058 23 1 11.4963 -3.0287 4.4670 24 6 9.0301 -1.9267 5.5223 25 6 7.8180 -1.5001 6.3526 26 8 7.3597 -2.6078 7.1304 27 6 6.6891 -2.9104 3.0504 28 8 2.2872 -1.0891 0.0005 29 1 -0.3634 0.0005 1.0277 30 1 -0.3633 0.8897 -0.5143 31 1 -0.3633 -0.8902 -0.5135 32 1 4.4157 1.3161 0.0115 33 1 4.5699 -2.4899 -0.5118 34 1 5.6083 -1.0443 -0.5115 35 1 6.9625 -4.2720 0.5637 36 1 6.7009 -2.7856 -0.3823 37 1 9.1400 -3.2985 0.0005 38 1 8.6438 -1.7251 0.6704 39 1 8.8569 -4.3303 2.2473 40 1 10.0445 -3.0051 2.2820 41 1 10.2970 -6.1974 6.8897 42 1 9.7938 -2.3411 6.1805 43 1 9.4339 -1.0609 4.9974 44 1 8.1013 -0.6829 7.0160 45 1 7.0206 -1.1684 5.6876 46 1 6.5916 -2.4092 7.6833 47 1 6.0840 -2.3254 3.7429 48 1 6.5587 -3.9729 3.2557 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689204816.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:29 Heat of formation + Delta-G solvation = -27.236849 kcal Electronic energy + Delta-G solvation = -30391.608058 eV Core-core repulsion = 26256.661767 eV Total energy + Delta-G solvation = -4134.946291 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.43789 -40.05217 -37.73727 -36.32311 -34.84999 -34.74168 -33.36447 -32.26181 -31.53035 -30.86836 -29.82956 -27.60273 -26.38540 -24.82741 -24.00148 -22.56295 -22.33197 -21.48878 -21.09822 -19.80991 -18.83387 -17.47336 -17.07208 -16.68281 -16.59327 -16.43467 -15.62730 -15.52395 -15.23511 -14.74000 -14.32004 -14.24355 -14.03611 -13.80821 -13.54525 -13.36572 -13.25392 -13.07303 -12.96876 -12.86816 -12.63739 -12.51679 -12.32722 -12.17260 -11.85244 -11.37603 -11.36059 -11.06611 -10.86898 -10.77004 -10.66467 -10.44401 -10.35348 -10.05049 -9.81165 -9.76087 -9.51905 -9.07184 -8.78294 -8.57469 -8.31576 -6.79173 -5.89551 -3.31002 1.28631 2.42189 2.57049 2.65513 3.16761 3.35275 3.48485 3.51535 3.89447 4.40600 4.52185 4.59160 4.71427 4.76935 4.84237 4.99583 5.06659 5.09816 5.11982 5.13675 5.24149 5.27160 5.33268 5.48008 5.57862 5.65866 5.71839 5.81966 5.86163 5.89030 5.97964 6.02645 6.13389 6.14802 6.19861 6.20928 6.36712 6.42170 6.50523 6.66428 6.75058 6.89720 7.00123 7.53385 7.60301 8.10443 8.22743 8.44018 8.53719 9.01492 9.79681 10.15738 11.26235 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.018742 B = 0.002914 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.577765 B = 9606.593879 C =10293.132540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.187 3.813 3 N -0.485 5.485 4 C -0.026 4.026 5 C -0.024 4.024 6 C -0.056 4.056 7 C 0.511 3.489 8 O -0.536 6.536 9 N -0.603 5.603 10 C 0.105 3.895 11 C -0.133 4.133 12 C -0.126 4.126 13 C 0.169 3.831 14 H 0.051 0.949 15 N -0.590 5.590 16 C -0.250 4.250 17 H 0.075 0.925 18 C 0.046 3.954 19 N -0.895 5.895 20 Si 0.871 3.129 21 H -0.288 1.288 22 H -0.304 1.304 23 H -0.271 1.271 24 C 0.134 3.866 25 C 0.061 3.939 26 O -0.534 6.534 27 C 0.103 3.897 28 O -0.197 6.197 29 H 0.093 0.907 30 H 0.099 0.901 31 H 0.087 0.913 32 H 0.182 0.818 33 H 0.112 0.888 34 H 0.126 0.874 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.060 0.940 39 H 0.077 0.923 40 H 0.061 0.939 41 H 0.260 0.740 42 H 0.063 0.937 43 H 0.051 0.949 44 H 0.022 0.978 45 H 0.032 0.968 46 H 0.354 0.646 47 H 0.084 0.916 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.192 10.037 -16.016 21.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.020 4.020 3 N -0.214 5.214 4 C -0.165 4.165 5 C -0.077 4.077 6 C -0.096 4.096 7 C 0.298 3.702 8 O -0.413 6.413 9 N -0.337 5.337 10 C -0.018 4.018 11 C -0.172 4.172 12 C -0.165 4.165 13 C 0.061 3.939 14 H 0.069 0.931 15 N -0.311 5.311 16 C -0.379 4.379 17 H 0.092 0.908 18 C -0.154 4.154 19 N -0.536 5.536 20 Si 0.702 3.298 21 H -0.217 1.217 22 H -0.232 1.232 23 H -0.196 1.196 24 C 0.008 3.992 25 C -0.020 4.020 26 O -0.335 6.335 27 C -0.020 4.020 28 O -0.084 6.084 29 H 0.111 0.889 30 H 0.118 0.882 31 H 0.106 0.894 32 H 0.199 0.801 33 H 0.130 0.870 34 H 0.144 0.856 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.079 0.921 39 H 0.096 0.904 40 H 0.080 0.920 41 H 0.070 0.930 42 H 0.081 0.919 43 H 0.069 0.931 44 H 0.040 0.960 45 H 0.050 0.950 46 H 0.197 0.803 47 H 0.102 0.898 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -10.184 10.391 -15.701 21.406 hybrid contribution 0.989 0.077 0.520 1.120 sum -9.195 10.468 -15.181 20.606 Atomic orbital electron populations 1.20242 0.81406 1.04893 1.04769 1.26232 0.96412 0.78677 1.00639 1.70413 1.02058 1.30306 1.18664 1.22951 0.95097 0.92753 1.05669 1.22521 0.83142 0.94824 1.07241 1.20130 0.92004 1.00487 0.96968 1.20216 0.80745 0.78901 0.90387 1.90738 1.53006 1.51461 1.46077 1.48221 1.27498 1.49314 1.08627 1.21813 0.91992 0.99233 0.88767 1.21955 0.94771 1.01276 0.99164 1.21921 1.00039 1.02455 0.92070 1.20548 0.91194 0.96107 0.86069 0.93089 1.44018 1.76747 1.03252 1.07075 1.18431 1.04991 0.82973 1.31457 0.90787 1.25331 0.97477 0.95239 0.97402 1.69893 1.31805 1.23734 1.28145 0.87034 0.85895 0.78994 0.77919 1.21658 1.23209 1.19557 1.21353 0.94578 0.91819 0.91467 1.22877 0.97989 0.87995 0.93120 1.86928 1.49940 1.36247 1.60432 1.22289 0.97626 1.02275 0.79831 1.84349 1.16520 1.37764 1.69753 0.88894 0.88194 0.89436 0.80110 0.86981 0.85623 0.90848 0.90461 0.90986 0.92084 0.90442 0.92011 0.93010 0.91893 0.93114 0.95981 0.94953 0.80316 0.89792 0.90544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.38 10.51 36.01 0.38 -0.01 16 2 C 0.19 2.26 8.34 -12.95 -0.11 2.15 16 3 N -0.48 -6.66 11.29 -11.10 -0.13 -6.78 16 4 C -0.03 -0.33 11.80 -17.77 -0.21 -0.54 16 5 C -0.02 -0.30 5.88 -35.68 -0.21 -0.51 16 6 C -0.06 -0.56 4.60 -29.03 -0.13 -0.69 16 7 C 0.51 7.47 7.69 -10.99 -0.08 7.38 16 8 O -0.54 -10.33 15.45 5.55 0.09 -10.24 16 9 N -0.60 -8.60 2.98 -173.01 -0.52 -9.11 16 10 C 0.10 1.11 6.34 -3.71 -0.02 1.09 16 11 C -0.13 -1.53 6.08 -26.61 -0.16 -1.69 16 12 C -0.13 -2.08 5.03 -26.68 -0.13 -2.21 16 13 C 0.17 3.13 2.77 -68.01 -0.19 2.94 16 14 H 0.05 0.91 7.77 -51.93 -0.40 0.50 16 15 N -0.59 -13.28 1.98 -165.75 -0.33 -13.61 16 16 C -0.25 -6.67 8.02 -15.06 -0.12 -6.79 16 17 H 0.07 2.16 7.12 -52.49 -0.37 1.79 16 18 C 0.05 1.31 5.28 -17.43 -0.09 1.22 16 19 N -0.89 -27.29 13.97 55.49 0.78 -26.52 16 20 Si 0.87 21.95 25.15 -169.99 -4.27 17.68 16 21 H -0.29 -7.27 6.66 56.52 0.38 -6.89 16 22 H -0.30 -7.83 7.11 56.52 0.40 -7.43 16 23 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 24 C 0.13 2.88 4.93 -4.05 -0.02 2.86 16 25 C 0.06 1.19 7.39 37.15 0.27 1.47 16 26 O -0.53 -11.72 13.13 -35.23 -0.46 -12.18 16 27 C 0.10 1.87 5.81 -3.91 -0.02 1.84 16 28 O -0.20 -2.64 10.78 5.36 0.06 -2.58 16 29 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.18 1.86 8.06 -52.49 -0.42 1.44 16 33 H 0.11 0.88 7.94 -51.93 -0.41 0.46 16 34 H 0.13 0.84 7.70 -51.93 -0.40 0.44 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.08 0.54 5.93 -51.93 -0.31 0.23 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.08 1.43 7.60 -51.93 -0.39 1.04 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 42 H 0.06 1.52 3.42 -51.92 -0.18 1.34 16 43 H 0.05 0.95 7.88 -51.93 -0.41 0.54 16 44 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 45 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.35 5.87 9.12 45.56 0.42 6.28 16 47 H 0.08 1.72 7.01 -51.93 -0.36 1.36 16 48 H 0.08 1.55 7.02 -51.93 -0.36 1.18 16 LS Contribution 384.24 15.07 5.79 5.79 Total: -1.00 -37.25 384.24 -6.43 -43.68 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -6.58 Total: 5.39 kcal Atomic # 6 Polarization: 9.35 SS G_CDS: -0.86 Total: 8.50 kcal Atomic # 7 Polarization: -55.83 SS G_CDS: -0.19 Total: -56.02 kcal Atomic # 8 Polarization: -24.69 SS G_CDS: -0.32 Total: -25.01 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.27 Total: 17.68 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -37.25 -6.43 -43.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689204816.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.448 kcal (2) G-P(sol) polarization free energy of solvation -37.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds