Wall clock time and date at job start Tue Mar 31 2020 21:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30255 * 125.62050 * 2 1 4 4 C 1.34481 * 108.69959 * 179.73755 * 3 2 1 5 5 C 1.34332 * 107.66868 * 0.39091 * 4 3 2 6 6 C 1.50706 * 126.44201 * 179.88418 * 5 4 3 7 7 C 1.50697 * 109.47285 * 89.70889 * 6 5 4 8 8 O 1.21286 * 119.99961 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99910 * 179.97438 * 7 6 5 10 10 C 1.46921 * 120.62760 * 359.97438 * 9 7 6 11 11 C 1.53192 * 108.77332 * 126.37086 * 10 9 7 12 12 C 1.53047 * 109.31402 * 54.63349 * 11 10 9 13 13 C 1.53045 * 109.53673 * 298.63577 * 12 11 10 14 14 H 1.09005 * 109.49960 * 301.38463 * 13 12 11 15 15 N 1.46498 * 109.49673 * 181.31721 * 13 12 11 16 16 C 1.36940 * 119.99727 * 305.16729 * 15 13 12 17 17 H 1.07998 * 120.00402 * 321.75518 * 16 15 13 18 18 C 1.38814 * 119.99484 * 141.75589 * 16 15 13 19 19 N 1.31618 * 119.99910 * 156.81872 * 18 16 15 20 20 Si 1.86804 * 120.00227 * 336.81382 * 18 16 15 21 21 H 1.48501 * 109.46988 * 95.30432 * 20 18 16 22 22 H 1.48494 * 109.47260 * 215.30566 * 20 18 16 23 23 H 1.48498 * 109.47173 * 335.30867 * 20 18 16 24 24 C 1.46499 * 119.99901 * 125.17517 * 15 13 12 25 25 C 1.52991 * 109.47705 * 89.99825 * 24 15 13 26 26 O 1.42900 * 109.47110 * 64.99373 * 25 24 15 27 27 C 1.46927 * 120.62706 * 179.72224 * 9 7 6 28 28 O 1.33972 * 125.61893 * 179.97438 * 2 1 3 29 29 H 1.09000 * 109.47293 * 270.02658 * 1 2 3 30 30 H 1.09003 * 109.47004 * 30.03079 * 1 2 3 31 31 H 1.09001 * 109.47177 * 150.02070 * 1 2 3 32 32 H 1.08000 * 126.16308 * 180.27333 * 4 3 2 33 33 H 1.08994 * 109.46862 * 209.71068 * 6 5 4 34 34 H 1.08999 * 109.46606 * 329.70662 * 6 5 4 35 35 H 1.08996 * 109.58919 * 246.15011 * 10 9 7 36 36 H 1.08995 * 109.58830 * 6.44067 * 10 9 7 37 37 H 1.09001 * 109.50224 * 174.58426 * 11 10 9 38 38 H 1.09004 * 109.49848 * 294.68185 * 11 10 9 39 39 H 1.08997 * 109.45770 * 58.65602 * 12 11 10 40 40 H 1.08997 * 109.46072 * 178.63108 * 12 11 10 41 41 H 0.97002 * 120.00371 * 179.97438 * 19 18 16 42 42 H 1.09007 * 109.46689 * 209.99854 * 24 15 13 43 43 H 1.08999 * 109.47404 * 329.99134 * 24 15 13 44 44 H 1.08998 * 109.47874 * 184.99818 * 25 24 15 45 45 H 1.09004 * 109.46991 * 305.00058 * 25 24 15 46 46 H 0.96700 * 113.99960 * 179.97438 * 26 25 24 47 47 H 1.08995 * 109.58654 * 353.41674 * 27 9 7 48 48 H 1.08997 * 109.58607 * 113.84464 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5522 0.6674 0.0058 5 6 3.5698 -0.6758 0.0008 6 6 4.7937 -1.5550 0.0019 7 6 5.2007 -1.8477 1.4230 8 8 4.5602 -1.3872 2.3443 9 7 6.2764 -2.6212 1.6703 10 6 7.0618 -3.1866 0.5648 11 6 8.5327 -2.8058 0.7599 12 6 8.9913 -3.2531 2.1498 13 6 8.1613 -2.5369 3.2177 14 1 8.2762 -1.4588 3.1054 15 7 8.6220 -2.9418 4.5481 16 6 8.6709 -4.2692 4.8810 17 1 7.8951 -4.9399 4.5423 18 6 9.7177 -4.7527 5.6539 19 7 9.5654 -5.8593 6.3499 20 14 11.3428 -3.8328 5.7059 21 1 11.3641 -2.9321 6.8864 22 1 12.4596 -4.8063 5.8058 23 1 11.4963 -3.0287 4.4670 24 6 9.0301 -1.9267 5.5223 25 6 7.8180 -1.5001 6.3526 26 8 7.3597 -2.6078 7.1304 27 6 6.6891 -2.9104 3.0504 28 8 2.2872 -1.0891 0.0005 29 1 -0.3634 0.0005 1.0277 30 1 -0.3633 0.8897 -0.5143 31 1 -0.3633 -0.8902 -0.5135 32 1 4.4157 1.3161 0.0115 33 1 4.5699 -2.4899 -0.5118 34 1 5.6083 -1.0443 -0.5115 35 1 6.9625 -4.2720 0.5637 36 1 6.7009 -2.7856 -0.3823 37 1 9.1400 -3.2985 0.0005 38 1 8.6438 -1.7251 0.6704 39 1 8.8569 -4.3303 2.2473 40 1 10.0445 -3.0051 2.2820 41 1 10.2970 -6.1974 6.8897 42 1 9.7938 -2.3411 6.1805 43 1 9.4339 -1.0609 4.9974 44 1 8.1013 -0.6829 7.0160 45 1 7.0206 -1.1684 5.6876 46 1 6.5916 -2.4092 7.6833 47 1 6.0840 -2.3254 3.7429 48 1 6.5587 -3.9729 3.2557 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689204816.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:28 Heat of formation + Delta-G solvation = -58.557453 kcal Electronic energy + Delta-G solvation = -30392.966222 eV Core-core repulsion = 26256.661767 eV Total energy + Delta-G solvation = -4136.304454 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -44.32813 -41.25036 -39.20879 -37.82061 -36.36465 -35.77171 -34.32918 -33.78561 -33.16152 -31.87784 -30.99561 -29.31880 -27.36360 -26.05152 -25.67772 -23.83364 -23.38780 -22.75224 -22.18747 -21.32656 -20.00549 -18.56870 -18.44949 -18.26366 -17.94482 -17.49472 -17.17773 -16.77500 -16.64394 -16.13542 -15.50442 -15.43965 -15.18422 -15.01706 -14.93643 -14.62923 -14.52839 -14.19429 -14.14498 -13.93876 -13.86422 -13.78318 -13.45648 -13.28834 -13.09693 -13.02443 -12.80989 -12.46943 -12.29267 -12.17118 -11.93152 -11.78060 -11.68461 -11.57705 -11.54606 -11.25689 -11.00661 -10.72195 -10.52253 -9.73511 -9.65825 -8.66755 -8.07579 -5.44665 0.38975 1.33210 1.41232 1.51966 1.54149 1.57636 1.71541 2.07698 2.50521 3.08137 3.16057 3.34181 3.49187 3.66753 3.70100 4.00652 4.05539 4.11572 4.12435 4.16848 4.24670 4.35575 4.38677 4.44525 4.48706 4.58355 4.60047 4.61872 4.66456 4.69452 4.74839 4.82883 4.91263 4.96112 5.01610 5.03083 5.03984 5.11012 5.23608 5.39091 5.43945 5.49180 5.63129 6.04574 6.28163 6.43749 6.71260 7.02192 7.10551 7.13300 7.72588 8.12476 9.12725 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.018742 B = 0.002914 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.577765 B = 9606.593879 C =10293.132540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.182 3.818 3 N -0.517 5.517 4 C -0.040 4.040 5 C -0.040 4.040 6 C -0.043 4.043 7 C 0.508 3.492 8 O -0.592 6.592 9 N -0.601 5.601 10 C 0.099 3.901 11 C -0.122 4.122 12 C -0.123 4.123 13 C 0.168 3.832 14 H 0.069 0.931 15 N -0.601 5.601 16 C -0.217 4.217 17 H 0.033 0.967 18 C -0.015 4.015 19 N -0.951 5.951 20 Si 0.935 3.065 21 H -0.288 1.288 22 H -0.315 1.315 23 H -0.248 1.248 24 C 0.121 3.879 25 C 0.063 3.937 26 O -0.573 6.573 27 C 0.119 3.881 28 O -0.214 6.214 29 H 0.100 0.900 30 H 0.115 0.885 31 H 0.108 0.892 32 H 0.200 0.800 33 H 0.142 0.858 34 H 0.171 0.829 35 H 0.072 0.928 36 H 0.131 0.869 37 H 0.101 0.899 38 H 0.079 0.921 39 H 0.047 0.953 40 H 0.051 0.949 41 H 0.256 0.744 42 H 0.038 0.962 43 H 0.086 0.914 44 H 0.056 0.944 45 H 0.036 0.964 46 H 0.374 0.626 47 H 0.054 0.946 48 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.944 12.362 -19.299 24.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.024 4.024 3 N -0.247 5.247 4 C -0.178 4.178 5 C -0.093 4.093 6 C -0.082 4.082 7 C 0.297 3.703 8 O -0.472 6.472 9 N -0.333 5.333 10 C -0.022 4.022 11 C -0.161 4.161 12 C -0.162 4.162 13 C 0.061 3.939 14 H 0.087 0.913 15 N -0.323 5.323 16 C -0.347 4.347 17 H 0.050 0.950 18 C -0.211 4.211 19 N -0.596 5.596 20 Si 0.765 3.235 21 H -0.216 1.216 22 H -0.244 1.244 23 H -0.172 1.172 24 C -0.004 4.004 25 C -0.017 4.017 26 O -0.377 6.377 27 C -0.006 4.006 28 O -0.102 6.102 29 H 0.119 0.881 30 H 0.133 0.867 31 H 0.127 0.873 32 H 0.217 0.783 33 H 0.160 0.840 34 H 0.189 0.811 35 H 0.090 0.910 36 H 0.149 0.851 37 H 0.120 0.880 38 H 0.098 0.902 39 H 0.066 0.934 40 H 0.070 0.930 41 H 0.065 0.935 42 H 0.056 0.944 43 H 0.104 0.896 44 H 0.074 0.926 45 H 0.054 0.946 46 H 0.221 0.779 47 H 0.073 0.927 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -9.938 12.761 -19.047 24.988 hybrid contribution 0.727 -0.605 1.544 1.811 sum -9.211 12.156 -17.503 23.215 Atomic orbital electron populations 1.20522 0.78378 1.06691 1.05752 1.27246 0.98047 0.78121 0.99031 1.70422 1.02878 1.31284 1.20142 1.23381 0.95492 0.93458 1.05481 1.22985 0.83585 0.95281 1.07442 1.20283 0.92217 1.02130 0.93616 1.21072 0.79653 0.77576 0.91977 1.90719 1.54638 1.53558 1.48312 1.48249 1.28048 1.49317 1.07697 1.22172 0.91141 0.99508 0.89371 1.21917 0.95454 1.02605 0.96094 1.21839 0.99106 1.00363 0.94862 1.20729 0.91230 0.97240 0.84687 0.91298 1.44138 1.76914 1.01941 1.09304 1.18164 1.02876 0.84457 1.29186 0.94957 1.25902 1.00748 0.96407 0.97997 1.70038 1.32555 1.26457 1.30502 0.85989 0.81280 0.77574 0.78677 1.21598 1.24391 1.17207 1.21537 0.94866 0.92428 0.91533 1.22864 0.97276 0.88075 0.93484 1.86856 1.51362 1.38209 1.61301 1.21731 0.97116 0.99411 0.82308 1.84356 1.17218 1.38505 1.70071 0.88130 0.86678 0.87340 0.78322 0.84018 0.81131 0.90996 0.85148 0.88047 0.90240 0.93404 0.93031 0.93521 0.94413 0.89608 0.92633 0.94596 0.77944 0.92740 0.94001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.68 10.51 71.24 0.75 0.07 16 2 C 0.18 4.18 8.34 88.34 0.74 4.92 16 3 N -0.52 -13.67 11.29 -303.82 -3.43 -17.10 16 4 C -0.04 -0.96 11.80 83.39 0.98 0.02 16 5 C -0.04 -0.92 5.88 24.79 0.15 -0.78 16 6 C -0.04 -0.69 4.60 29.10 0.13 -0.56 16 7 C 0.51 13.80 7.69 87.66 0.67 14.48 16 8 O -0.59 -22.77 15.45 -3.05 -0.05 -22.82 16 9 N -0.60 -15.97 2.98 -819.68 -2.44 -18.41 16 10 C 0.10 1.69 6.34 86.36 0.55 2.24 16 11 C -0.12 -2.28 6.08 30.67 0.19 -2.10 16 12 C -0.12 -3.86 5.03 30.62 0.15 -3.71 16 13 C 0.17 6.08 2.77 44.94 0.12 6.21 16 14 H 0.07 2.27 7.77 -2.38 -0.02 2.26 16 15 N -0.60 -27.17 1.98 -678.32 -1.34 -28.52 16 16 C -0.22 -12.02 8.02 84.03 0.67 -11.34 16 17 H 0.03 2.04 7.12 -2.91 -0.02 2.02 16 18 C -0.02 -0.88 5.28 84.86 0.45 -0.43 16 19 N -0.95 -60.82 13.97 21.65 0.30 -60.52 16 20 Si 0.93 46.37 25.15 68.60 1.73 48.10 16 21 H -0.29 -14.12 6.66 99.48 0.66 -13.46 16 22 H -0.31 -16.00 7.11 99.48 0.71 -15.29 16 23 H -0.25 -11.23 7.11 99.48 0.71 -10.52 16 24 C 0.12 5.08 4.93 86.38 0.43 5.51 16 25 C 0.06 2.40 7.39 71.98 0.53 2.93 16 26 O -0.57 -25.50 13.13 -148.98 -1.96 -27.46 16 27 C 0.12 4.40 5.81 86.23 0.50 4.90 16 28 O -0.21 -5.44 10.78 -3.73 -0.04 -5.48 16 29 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.20 3.65 8.06 -2.91 -0.02 3.62 16 33 H 0.14 1.47 7.94 -2.39 -0.02 1.45 16 34 H 0.17 1.17 7.70 -2.39 -0.02 1.15 16 35 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.13 0.93 5.93 -2.39 -0.01 0.91 16 37 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 39 H 0.05 1.78 7.60 -2.39 -0.02 1.76 16 40 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 42 H 0.04 1.79 3.42 -2.38 -0.01 1.78 16 43 H 0.09 2.95 7.88 -2.39 -0.02 2.93 16 44 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 45 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 46 H 0.37 12.60 9.12 -74.06 -0.68 11.93 16 47 H 0.05 2.32 7.01 -2.39 -0.02 2.30 16 48 H 0.04 1.81 7.02 -2.39 -0.02 1.79 16 Total: -1.00 -88.76 384.24 0.05 -88.71 By element: Atomic # 1 Polarization: 20.86 SS G_CDS: 0.26 Total: 21.12 kcal Atomic # 6 Polarization: 15.35 SS G_CDS: 7.02 Total: 22.37 kcal Atomic # 7 Polarization: -117.63 SS G_CDS: -6.91 Total: -124.55 kcal Atomic # 8 Polarization: -53.71 SS G_CDS: -2.04 Total: -55.76 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 1.73 Total: 48.10 kcal Total: -88.76 0.05 -88.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689204816.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.156 kcal (2) G-P(sol) polarization free energy of solvation -88.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds