Wall clock time and date at job start Tue Mar 31 2020 21:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.50702 * 109.47062 * 2 1 4 4 O 1.33647 * 125.80337 * 269.97852 * 3 2 1 5 5 C 1.34221 * 110.90928 * 179.97438 * 4 3 2 6 6 C 1.34179 * 109.12156 * 0.02562 * 5 4 3 7 7 C 1.36422 * 125.79802 * 90.26564 * 3 2 1 8 8 C 1.47375 * 127.19279 * 0.02562 * 7 3 2 9 9 O 1.21614 * 120.00399 * 0.14788 * 8 7 3 10 10 N 1.34781 * 119.99846 * 180.15399 * 8 7 3 11 11 C 1.46498 * 119.99839 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.46845 * 179.97438 * 11 10 8 13 13 C 1.53010 * 109.46997 * 179.97438 * 12 11 10 14 14 H 1.09003 * 109.46376 * 55.00133 * 13 12 11 15 15 C 1.52999 * 109.47139 * 174.99941 * 13 12 11 16 16 N 1.46898 * 109.46894 * 295.00395 * 13 12 11 17 17 C 1.46898 * 110.99859 * 155.00310 * 16 13 12 18 18 C 1.50695 * 109.47545 * 179.97438 * 17 16 13 19 19 O 1.21294 * 119.99664 * 359.97438 * 18 17 16 20 20 N 1.34775 * 120.00607 * 179.97438 * 18 17 16 21 21 C 1.37092 * 120.00151 * 180.02562 * 20 18 17 22 22 H 1.08000 * 120.00191 * 0.02562 * 21 20 18 23 23 C 1.38952 * 119.99949 * 179.97438 * 21 20 18 24 24 N 1.31415 * 120.00113 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00020 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47337 * 0.02562 * 25 23 21 27 27 H 1.48505 * 109.47079 * 119.99870 * 25 23 21 28 28 H 1.48504 * 109.47290 * 239.99925 * 25 23 21 29 29 H 1.08998 * 109.47621 * 59.99843 * 1 2 3 30 30 H 1.09003 * 109.47160 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47042 * 299.99214 * 1 2 3 32 32 H 1.09006 * 109.47042 * 240.00786 * 2 1 3 33 33 H 1.08996 * 109.47500 * 120.00691 * 2 1 3 34 34 H 1.08003 * 125.43746 * 179.97438 * 5 4 3 35 35 H 1.08002 * 127.01820 * 179.97438 * 6 5 4 36 36 H 0.96996 * 120.00115 * 359.97438 * 10 8 7 37 37 H 1.08995 * 109.46971 * 299.99971 * 11 10 8 38 38 H 1.09002 * 109.47081 * 59.99825 * 11 10 8 39 39 H 1.08995 * 109.47639 * 299.99963 * 12 11 10 40 40 H 1.09002 * 109.47097 * 60.00235 * 12 11 10 41 41 H 1.08993 * 109.47034 * 179.97438 * 15 13 12 42 42 H 1.08996 * 109.47121 * 300.00905 * 15 13 12 43 43 H 1.09003 * 109.46737 * 60.00302 * 15 13 12 44 44 H 1.00902 * 110.99630 * 278.94699 * 16 13 12 45 45 H 1.09008 * 109.47028 * 299.99339 * 17 16 13 46 46 H 1.08997 * 109.47632 * 59.98974 * 17 16 13 47 47 H 0.97003 * 119.99434 * 359.97438 * 20 18 17 48 48 H 0.97001 * 120.00512 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 8 2.2932 2.1578 -1.0839 5 6 2.7249 3.3810 -0.7389 6 6 2.7576 3.4744 0.5992 7 6 2.3030 2.1715 1.1065 8 6 2.1660 1.7627 2.5157 9 8 1.7752 0.6439 2.7892 10 7 2.4736 2.6287 3.5016 11 6 2.3369 2.2225 4.9025 12 6 2.7478 3.3821 5.8121 13 6 2.6043 2.9581 7.2752 14 1 3.1771 2.0468 7.4471 15 6 3.1321 4.0710 8.1828 16 7 1.1881 2.7106 7.5767 17 6 1.0447 1.7758 8.7007 18 6 -0.4183 1.5472 8.9806 19 8 -1.2589 2.1083 8.3099 20 7 -0.7928 0.7193 9.9760 21 6 -2.1237 0.5110 10.2302 22 1 -2.8722 1.0100 9.6325 23 6 -2.5098 -0.3429 11.2561 24 7 -1.5991 -0.9512 11.9824 25 14 -4.3233 -0.6262 11.6029 26 1 -5.1395 0.1692 10.6509 27 1 -4.6390 -2.0681 11.4403 28 1 -4.6331 -0.2054 12.9930 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 1.8932 -0.5137 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.0025 4.1646 -1.4284 35 1 3.0601 4.3304 1.1841 36 1 2.7856 3.5209 3.2836 37 1 1.3000 1.9528 5.1030 38 1 2.9797 1.3638 5.0962 39 1 3.7847 3.6515 5.6115 40 1 2.1053 4.2411 5.6185 41 1 3.0295 3.7692 9.2251 42 1 4.1829 4.2547 7.9590 43 1 2.5594 4.9824 8.0108 44 1 0.7013 3.5750 7.7610 45 1 1.5189 0.8275 8.4474 46 1 1.5223 2.1958 9.5859 47 1 -0.1205 0.2704 10.5121 48 1 -1.8685 -1.5476 12.6984 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690841040.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:45 Heat of formation + Delta-G solvation = -74.834996 kcal Electronic energy + Delta-G solvation = -28292.709765 eV Core-core repulsion = 24155.699464 eV Total energy + Delta-G solvation = -4137.010302 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.85559 -39.45429 -38.43226 -37.06850 -34.93057 -34.13434 -33.86054 -33.05738 -31.48354 -31.03788 -29.29164 -28.62934 -26.30083 -24.82108 -23.93941 -23.35887 -22.58418 -21.06766 -20.82261 -19.81923 -19.19277 -18.10242 -17.84322 -16.55900 -16.15551 -15.98167 -15.88916 -15.62463 -15.19356 -14.87129 -14.62954 -14.55193 -14.48404 -13.93196 -13.75731 -13.68224 -13.28822 -13.25089 -13.03549 -12.91385 -12.68458 -12.50776 -12.14916 -11.90393 -11.76939 -11.54859 -11.50318 -11.29601 -11.21826 -11.18557 -11.02445 -10.85195 -10.31596 -10.19107 -10.09627 -9.96495 -9.48546 -9.08990 -8.81258 -8.42756 -8.00752 -7.91885 -6.38460 -3.78968 1.16245 1.76023 2.51105 3.18646 3.18970 3.29290 3.29955 3.36871 3.94937 4.12116 4.18386 4.35495 4.55678 4.58006 4.73626 4.86013 4.99848 5.04939 5.12058 5.13517 5.20782 5.24392 5.29757 5.33172 5.36236 5.46776 5.57284 5.66208 5.70174 5.72903 5.79209 5.85357 5.87623 5.97418 6.01809 6.07148 6.10932 6.12544 6.29777 6.32700 6.46135 6.74684 7.25469 7.48264 7.58748 7.69557 8.10230 8.21896 8.64990 9.21612 9.58237 10.09792 10.79437 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.012427 B = 0.002100 C = 0.001859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.673874 B =13331.919595 C =15055.679517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.053 4.053 3 C 0.081 3.919 4 O -0.176 6.176 5 C -0.041 4.041 6 C -0.189 4.189 7 C -0.243 4.243 8 C 0.585 3.415 9 O -0.535 6.535 10 N -0.723 5.723 11 C 0.124 3.876 12 C -0.115 4.115 13 C 0.085 3.915 14 H 0.080 0.920 15 C -0.183 4.183 16 N -0.662 5.662 17 C 0.050 3.950 18 C 0.441 3.559 19 O -0.583 6.583 20 N -0.565 5.565 21 C -0.297 4.297 22 H 0.103 0.897 23 C 0.021 3.979 24 N -0.902 5.902 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.281 1.281 28 H -0.282 1.282 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.115 0.885 34 H 0.207 0.793 35 H 0.156 0.844 36 H 0.396 0.604 37 H 0.090 0.910 38 H 0.062 0.938 39 H 0.066 0.934 40 H 0.070 0.930 41 H 0.058 0.942 42 H 0.059 0.941 43 H 0.058 0.942 44 H 0.350 0.650 45 H 0.086 0.914 46 H 0.043 0.957 47 H 0.392 0.608 48 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.968 9.172 -21.093 27.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.090 4.090 3 C 0.028 3.972 4 O -0.072 6.072 5 C -0.107 4.107 6 C -0.209 4.209 7 C -0.248 4.248 8 C 0.373 3.627 9 O -0.414 6.414 10 N -0.374 5.374 11 C 0.001 3.999 12 C -0.154 4.154 13 C -0.026 4.026 14 H 0.098 0.902 15 C -0.242 4.242 16 N -0.295 5.295 17 C -0.082 4.082 18 C 0.227 3.773 19 O -0.467 6.467 20 N -0.202 5.202 21 C -0.427 4.427 22 H 0.121 0.879 23 C -0.181 4.181 24 N -0.544 5.544 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.207 1.207 28 H -0.208 1.208 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.099 0.901 33 H 0.133 0.867 34 H 0.223 0.777 35 H 0.173 0.827 36 H 0.229 0.771 37 H 0.108 0.892 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.077 0.923 44 H 0.170 0.830 45 H 0.104 0.896 46 H 0.061 0.939 47 H 0.225 0.775 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 13.969 8.024 -21.927 27.209 hybrid contribution 0.147 0.914 1.461 1.729 sum 14.116 8.938 -20.467 26.420 Atomic orbital electron populations 1.21697 0.93122 1.02892 1.02477 1.20426 0.97192 0.86259 1.05108 1.22924 0.96710 0.94489 0.83045 1.83772 1.65237 1.23122 1.35097 1.23844 1.04247 0.86191 0.96388 1.22857 1.05741 0.97703 0.94570 1.21220 1.13704 0.95747 0.94082 1.17170 0.77240 0.84648 0.83636 1.90795 1.46434 1.20216 1.83932 1.45832 1.68312 1.16582 1.06689 1.21399 1.03869 0.96872 0.77781 1.21748 1.00901 0.98295 0.94413 1.21503 0.89880 0.97848 0.93406 0.90193 1.22512 1.01533 0.99599 1.00519 1.60203 1.09682 1.17882 1.41690 1.21699 0.96534 0.97543 0.92443 1.19831 0.89548 0.84294 0.83648 1.90525 1.52806 1.52496 1.50854 1.41872 1.08450 1.40306 1.29545 1.19748 0.83209 1.24907 1.14805 0.87900 1.25263 1.00025 0.96537 0.96227 1.69621 1.33471 1.30141 1.21159 0.85805 0.82251 0.78139 0.78176 1.19229 1.20742 1.20818 0.92728 0.91176 0.91618 0.90101 0.86666 0.77659 0.82652 0.77053 0.89165 0.91925 0.91556 0.91162 0.92335 0.92241 0.92328 0.83047 0.89596 0.93887 0.77488 0.91969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.89 37.15 0.37 -1.03 16 2 C -0.05 -0.52 5.95 -27.89 -0.17 -0.69 16 3 C 0.08 0.88 6.63 -34.96 -0.23 0.65 16 4 O -0.18 -1.69 10.52 7.65 0.08 -1.61 16 5 C -0.04 -0.29 12.03 29.30 0.35 0.06 16 6 C -0.19 -1.53 10.60 -37.45 -0.40 -1.92 16 7 C -0.24 -2.75 6.31 -103.28 -0.65 -3.41 16 8 C 0.59 7.89 7.81 -12.54 -0.10 7.79 16 9 O -0.54 -9.03 14.84 5.27 0.08 -8.95 16 10 N -0.72 -8.02 5.55 -61.40 -0.34 -8.36 16 11 C 0.12 1.53 5.56 -4.04 -0.02 1.51 16 12 C -0.12 -1.12 5.01 -26.73 -0.13 -1.26 16 13 C 0.08 0.96 2.59 -67.71 -0.18 0.79 16 14 H 0.08 0.90 7.80 -51.93 -0.41 0.50 16 15 C -0.18 -1.78 9.16 37.16 0.34 -1.43 16 16 N -0.66 -10.29 5.33 -107.99 -0.58 -10.87 16 17 C 0.05 0.88 5.96 -4.98 -0.03 0.86 16 18 C 0.44 10.54 7.82 -10.99 -0.09 10.45 16 19 O -0.58 -16.03 15.78 5.55 0.09 -15.94 16 20 N -0.56 -14.54 5.29 -10.97 -0.06 -14.60 16 21 C -0.30 -8.42 9.68 -14.93 -0.14 -8.57 16 22 H 0.10 3.07 7.16 -52.49 -0.38 2.70 16 23 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 24 N -0.90 -24.89 13.05 55.50 0.72 -24.17 16 25 Si 0.93 21.41 29.55 -169.99 -5.02 16.38 16 26 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 27 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 28 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.12 1.31 6.47 -51.93 -0.34 0.98 16 34 H 0.21 0.60 8.06 -52.48 -0.42 0.18 16 35 H 0.16 0.82 7.74 -52.49 -0.41 0.41 16 36 H 0.40 3.18 7.64 -40.82 -0.31 2.86 16 37 H 0.09 1.45 7.75 -51.93 -0.40 1.05 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.62 7.45 -51.93 -0.39 0.23 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 44 H 0.35 5.66 8.17 -39.29 -0.32 5.34 16 45 H 0.09 1.42 8.06 -51.92 -0.42 1.00 16 46 H 0.04 0.68 7.43 -51.93 -0.39 0.29 16 47 H 0.39 9.64 7.90 -40.82 -0.32 9.31 16 48 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 404.94 15.07 6.10 6.10 Total: -1.00 -34.73 404.94 -7.53 -42.26 By element: Atomic # 1 Polarization: 22.91 SS G_CDS: -7.43 Total: 15.48 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: -1.17 Total: 4.28 kcal Atomic # 7 Polarization: -57.75 SS G_CDS: -0.25 Total: -58.00 kcal Atomic # 8 Polarization: -26.75 SS G_CDS: 0.25 Total: -26.50 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.73 -7.53 -42.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690841040.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.578 kcal (2) G-P(sol) polarization free energy of solvation -34.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds