Wall clock time and date at job start Tue Mar 31 2020 21:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.50702 * 109.47062 * 2 1 4 4 O 1.33647 * 125.80337 * 269.97852 * 3 2 1 5 5 C 1.34221 * 110.90928 * 179.97438 * 4 3 2 6 6 C 1.34179 * 109.12156 * 0.02562 * 5 4 3 7 7 C 1.36422 * 125.79802 * 90.26564 * 3 2 1 8 8 C 1.47375 * 127.19279 * 0.02562 * 7 3 2 9 9 O 1.21614 * 120.00399 * 0.14788 * 8 7 3 10 10 N 1.34781 * 119.99846 * 180.15399 * 8 7 3 11 11 C 1.46498 * 119.99839 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.46845 * 179.97438 * 11 10 8 13 13 C 1.53010 * 109.46997 * 179.97438 * 12 11 10 14 14 H 1.09003 * 109.46376 * 55.00133 * 13 12 11 15 15 C 1.52999 * 109.47139 * 174.99941 * 13 12 11 16 16 N 1.46898 * 109.46894 * 295.00395 * 13 12 11 17 17 C 1.46898 * 110.99859 * 155.00310 * 16 13 12 18 18 C 1.50695 * 109.47545 * 179.97438 * 17 16 13 19 19 O 1.21294 * 119.99664 * 359.97438 * 18 17 16 20 20 N 1.34775 * 120.00607 * 179.97438 * 18 17 16 21 21 C 1.37092 * 120.00151 * 180.02562 * 20 18 17 22 22 H 1.08000 * 120.00191 * 0.02562 * 21 20 18 23 23 C 1.38952 * 119.99949 * 179.97438 * 21 20 18 24 24 N 1.31415 * 120.00113 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00020 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47337 * 0.02562 * 25 23 21 27 27 H 1.48505 * 109.47079 * 119.99870 * 25 23 21 28 28 H 1.48504 * 109.47290 * 239.99925 * 25 23 21 29 29 H 1.08998 * 109.47621 * 59.99843 * 1 2 3 30 30 H 1.09003 * 109.47160 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47042 * 299.99214 * 1 2 3 32 32 H 1.09006 * 109.47042 * 240.00786 * 2 1 3 33 33 H 1.08996 * 109.47500 * 120.00691 * 2 1 3 34 34 H 1.08003 * 125.43746 * 179.97438 * 5 4 3 35 35 H 1.08002 * 127.01820 * 179.97438 * 6 5 4 36 36 H 0.96996 * 120.00115 * 359.97438 * 10 8 7 37 37 H 1.08995 * 109.46971 * 299.99971 * 11 10 8 38 38 H 1.09002 * 109.47081 * 59.99825 * 11 10 8 39 39 H 1.08995 * 109.47639 * 299.99963 * 12 11 10 40 40 H 1.09002 * 109.47097 * 60.00235 * 12 11 10 41 41 H 1.08993 * 109.47034 * 179.97438 * 15 13 12 42 42 H 1.08996 * 109.47121 * 300.00905 * 15 13 12 43 43 H 1.09003 * 109.46737 * 60.00302 * 15 13 12 44 44 H 1.00902 * 110.99630 * 278.94699 * 16 13 12 45 45 H 1.09008 * 109.47028 * 299.99339 * 17 16 13 46 46 H 1.08997 * 109.47632 * 59.98974 * 17 16 13 47 47 H 0.97003 * 119.99434 * 359.97438 * 20 18 17 48 48 H 0.97001 * 120.00512 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 8 2.2932 2.1578 -1.0839 5 6 2.7249 3.3810 -0.7389 6 6 2.7576 3.4744 0.5992 7 6 2.3030 2.1715 1.1065 8 6 2.1660 1.7627 2.5157 9 8 1.7752 0.6439 2.7892 10 7 2.4736 2.6287 3.5016 11 6 2.3369 2.2225 4.9025 12 6 2.7478 3.3821 5.8121 13 6 2.6043 2.9581 7.2752 14 1 3.1771 2.0468 7.4471 15 6 3.1321 4.0710 8.1828 16 7 1.1881 2.7106 7.5767 17 6 1.0447 1.7758 8.7007 18 6 -0.4183 1.5472 8.9806 19 8 -1.2589 2.1083 8.3099 20 7 -0.7928 0.7193 9.9760 21 6 -2.1237 0.5110 10.2302 22 1 -2.8722 1.0100 9.6325 23 6 -2.5098 -0.3429 11.2561 24 7 -1.5991 -0.9512 11.9824 25 14 -4.3233 -0.6262 11.6029 26 1 -5.1395 0.1692 10.6509 27 1 -4.6390 -2.0681 11.4403 28 1 -4.6331 -0.2054 12.9930 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 1.8932 -0.5137 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.0025 4.1646 -1.4284 35 1 3.0601 4.3304 1.1841 36 1 2.7856 3.5209 3.2836 37 1 1.3000 1.9528 5.1030 38 1 2.9797 1.3638 5.0962 39 1 3.7847 3.6515 5.6115 40 1 2.1053 4.2411 5.6185 41 1 3.0295 3.7692 9.2251 42 1 4.1829 4.2547 7.9590 43 1 2.5594 4.9824 8.0108 44 1 0.7013 3.5750 7.7610 45 1 1.5189 0.8275 8.4474 46 1 1.5223 2.1958 9.5859 47 1 -0.1205 0.2704 10.5121 48 1 -1.8685 -1.5476 12.6984 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690841040.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:44 Heat of formation + Delta-G solvation = -101.238670 kcal Electronic energy + Delta-G solvation = -28293.854715 eV Core-core repulsion = 24155.699464 eV Total energy + Delta-G solvation = -4138.155251 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.55261 -40.50795 -40.18087 -38.30769 -36.11967 -35.78918 -34.95413 -33.82549 -33.30419 -32.44638 -30.11474 -29.45121 -27.95860 -25.95528 -25.41768 -24.19654 -23.42339 -21.98036 -21.67551 -21.14066 -20.61814 -19.92044 -18.84889 -17.74371 -17.31223 -16.96475 -16.90728 -16.73852 -16.61725 -16.34128 -15.93210 -15.62979 -15.53439 -15.33634 -15.20907 -14.65702 -14.44375 -14.23332 -14.08690 -13.88663 -13.61222 -13.53626 -13.49327 -13.28543 -13.09666 -12.85109 -12.66629 -12.54060 -12.42322 -12.22005 -12.17965 -12.10332 -11.99594 -11.73058 -11.52154 -11.03593 -10.83616 -10.35115 -10.08334 -10.02150 -9.54197 -9.23772 -8.47703 -5.96359 0.32414 1.14770 1.35430 1.40329 1.54864 1.82361 2.04839 2.28155 2.28985 2.34520 2.95239 3.19529 3.55516 3.56111 3.78152 3.87204 3.89181 4.12959 4.14112 4.23316 4.27025 4.34394 4.42362 4.46176 4.49797 4.54206 4.61315 4.62217 4.73129 4.76724 4.91018 4.92256 4.99686 5.03385 5.08471 5.19970 5.23404 5.27136 5.32788 5.39944 5.40093 5.50734 5.91908 6.05048 6.15007 6.47438 6.58914 6.59581 7.11933 7.25631 7.55632 8.11248 8.70006 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.012427 B = 0.002100 C = 0.001859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.673874 B =13331.919595 C =15055.679517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.053 4.053 3 C 0.067 3.933 4 O -0.181 6.181 5 C -0.030 4.030 6 C -0.196 4.196 7 C -0.267 4.267 8 C 0.577 3.423 9 O -0.581 6.581 10 N -0.709 5.709 11 C 0.130 3.870 12 C -0.102 4.102 13 C 0.083 3.917 14 H 0.083 0.917 15 C -0.175 4.175 16 N -0.678 5.678 17 C 0.067 3.933 18 C 0.437 3.563 19 O -0.624 6.624 20 N -0.575 5.575 21 C -0.333 4.333 22 H 0.077 0.923 23 C -0.015 4.015 24 N -0.920 5.920 25 Si 0.993 3.007 26 H -0.274 1.274 27 H -0.271 1.271 28 H -0.268 1.268 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.035 0.965 32 H 0.104 0.896 33 H 0.093 0.907 34 H 0.251 0.749 35 H 0.184 0.816 36 H 0.413 0.587 37 H 0.046 0.954 38 H 0.053 0.947 39 H 0.101 0.899 40 H 0.074 0.926 41 H 0.049 0.951 42 H 0.084 0.916 43 H 0.060 0.940 44 H 0.344 0.656 45 H 0.098 0.902 46 H 0.068 0.932 47 H 0.396 0.604 48 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.702 10.818 -21.994 29.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.090 4.090 3 C 0.014 3.986 4 O -0.077 6.077 5 C -0.095 4.095 6 C -0.215 4.215 7 C -0.272 4.272 8 C 0.366 3.634 9 O -0.463 6.463 10 N -0.360 5.360 11 C 0.006 3.994 12 C -0.140 4.140 13 C -0.027 4.027 14 H 0.101 0.899 15 C -0.234 4.234 16 N -0.311 5.311 17 C -0.066 4.066 18 C 0.224 3.776 19 O -0.510 6.510 20 N -0.212 5.212 21 C -0.462 4.462 22 H 0.095 0.905 23 C -0.214 4.214 24 N -0.561 5.561 25 Si 0.817 3.183 26 H -0.199 1.199 27 H -0.197 1.197 28 H -0.193 1.193 29 H 0.086 0.914 30 H 0.098 0.902 31 H 0.054 0.946 32 H 0.123 0.877 33 H 0.111 0.889 34 H 0.267 0.733 35 H 0.202 0.798 36 H 0.250 0.750 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.120 0.880 40 H 0.093 0.907 41 H 0.068 0.932 42 H 0.102 0.898 43 H 0.079 0.921 44 H 0.164 0.836 45 H 0.116 0.884 46 H 0.086 0.914 47 H 0.230 0.770 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 15.759 9.706 -22.821 29.383 hybrid contribution -0.343 0.445 1.670 1.762 sum 15.416 10.151 -21.152 28.073 Atomic orbital electron populations 1.21653 0.93229 1.03306 1.01529 1.20377 0.97079 0.86417 1.05136 1.23029 0.97168 0.94950 0.83500 1.83785 1.65258 1.24094 1.34585 1.24759 1.02028 0.85703 0.96992 1.23183 1.05933 0.97085 0.95259 1.21284 1.15123 0.97882 0.92876 1.17637 0.76542 0.84274 0.84985 1.90765 1.48582 1.22217 1.84779 1.45687 1.67418 1.17091 1.05829 1.21215 1.01066 0.98060 0.79051 1.21690 1.02976 0.96897 0.92471 1.21636 0.87306 0.98965 0.94743 0.89866 1.22425 1.02970 0.98649 0.99360 1.60205 1.12681 1.17425 1.40770 1.21528 0.91663 0.99023 0.94359 1.20965 0.92096 0.82476 0.82022 1.90490 1.54929 1.53673 1.51929 1.41950 1.07790 1.41083 1.30380 1.19685 0.84141 1.26482 1.15922 0.90496 1.26055 1.04314 0.95624 0.95419 1.69678 1.35137 1.30075 1.21253 0.84870 0.76965 0.78233 0.78249 1.19907 1.19650 1.19339 0.91444 0.90152 0.94575 0.87749 0.88866 0.73295 0.79825 0.74974 0.93520 0.92839 0.88040 0.90704 0.93161 0.89756 0.92104 0.83644 0.88377 0.91408 0.76991 0.91292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 9.89 71.98 0.71 -2.12 16 2 C -0.05 -1.09 5.95 29.85 0.18 -0.91 16 3 C 0.07 1.45 6.63 25.26 0.17 1.62 16 4 O -0.18 -3.18 10.52 4.45 0.05 -3.13 16 5 C -0.03 -0.34 12.03 66.89 0.80 0.47 16 6 C -0.20 -2.70 10.60 23.65 0.25 -2.45 16 7 C -0.27 -6.01 6.31 -18.99 -0.12 -6.13 16 8 C 0.58 16.13 7.81 86.65 0.68 16.80 16 9 O -0.58 -21.12 14.84 -4.07 -0.06 -21.18 16 10 N -0.71 -15.53 5.55 -466.42 -2.59 -18.12 16 11 C 0.13 3.23 5.56 86.38 0.48 3.71 16 12 C -0.10 -1.79 5.01 30.60 0.15 -1.63 16 13 C 0.08 1.75 2.59 44.92 0.12 1.86 16 14 H 0.08 1.71 7.80 -2.39 -0.02 1.70 16 15 C -0.18 -2.92 9.16 71.98 0.66 -2.26 16 16 N -0.68 -20.98 5.33 -495.57 -2.64 -23.62 16 17 C 0.07 2.33 5.96 85.56 0.51 2.84 16 18 C 0.44 21.46 7.82 87.66 0.69 22.15 16 19 O -0.62 -35.71 15.78 -3.07 -0.05 -35.76 16 20 N -0.57 -30.44 5.29 -306.99 -1.62 -32.06 16 21 C -0.33 -19.47 9.68 84.04 0.81 -18.66 16 22 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 23 C -0.01 -0.80 5.50 84.93 0.47 -0.33 16 24 N -0.92 -50.73 13.05 21.66 0.28 -50.45 16 25 Si 0.99 44.10 29.55 68.60 2.03 46.13 16 26 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 27 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 28 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 29 H 0.07 1.15 8.14 -2.39 -0.02 1.14 16 30 H 0.08 1.40 8.14 -2.39 -0.02 1.39 16 31 H 0.03 0.92 8.14 -2.38 -0.02 0.91 16 32 H 0.10 1.56 8.14 -2.38 -0.02 1.54 16 33 H 0.09 2.33 6.47 -2.39 -0.02 2.31 16 34 H 0.25 0.28 8.06 -2.91 -0.02 0.26 16 35 H 0.18 1.29 7.74 -2.91 -0.02 1.26 16 36 H 0.41 5.89 7.64 -92.71 -0.71 5.18 16 37 H 0.05 1.59 7.75 -2.39 -0.02 1.57 16 38 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.05 0.93 7.45 -2.39 -0.02 0.92 16 42 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.06 1.00 8.13 -2.39 -0.02 0.98 16 44 H 0.34 11.18 8.17 -89.69 -0.73 10.45 16 45 H 0.10 3.20 8.06 -2.38 -0.02 3.18 16 46 H 0.07 2.05 7.43 -2.39 -0.02 2.03 16 47 H 0.40 19.88 7.90 -92.71 -0.73 19.15 16 48 H 0.28 14.25 8.31 -92.71 -0.77 13.48 16 Total: -1.00 -80.06 404.94 0.78 -79.28 By element: Atomic # 1 Polarization: 45.12 SS G_CDS: -1.17 Total: 43.95 kcal Atomic # 6 Polarization: 8.41 SS G_CDS: 6.56 Total: 14.96 kcal Atomic # 7 Polarization: -117.68 SS G_CDS: -6.57 Total: -124.25 kcal Atomic # 8 Polarization: -60.01 SS G_CDS: -0.06 Total: -60.07 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -80.06 0.78 -79.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690841040.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.960 kcal (2) G-P(sol) polarization free energy of solvation -80.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds