Wall clock time and date at job start Tue Mar 31 2020 21:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50706 * 109.46898 * 2 1 4 4 C 1.35308 * 126.66682 * 89.99844 * 3 2 1 5 5 C 1.42272 * 103.92307 * 179.97438 * 4 3 2 6 6 C 1.48333 * 126.93709 * 180.02562 * 5 4 3 7 7 O 1.21486 * 120.00188 * 354.32516 * 6 5 4 8 8 N 1.34777 * 119.99658 * 174.32568 * 6 5 4 9 9 C 1.46925 * 120.63078 * 353.65697 * 8 6 5 10 10 C 1.53190 * 108.77710 * 233.58246 * 9 8 6 11 11 C 1.53040 * 109.34207 * 305.38587 * 10 9 8 12 12 C 1.53037 * 109.54050 * 61.31366 * 11 10 9 13 13 H 1.08996 * 109.50041 * 58.64793 * 12 11 10 14 14 N 1.46499 * 109.49898 * 178.71754 * 12 11 10 15 15 C 1.36937 * 119.99870 * 59.93372 * 14 12 11 16 16 H 1.07999 * 119.99939 * 35.67289 * 15 14 12 17 17 C 1.38808 * 119.99922 * 215.94570 * 15 14 12 18 18 N 1.31625 * 119.99763 * 16.08404 * 17 15 14 19 19 Si 1.86801 * 120.00143 * 196.07563 * 17 15 14 20 20 H 1.48496 * 109.46993 * 0.02562 * 19 17 15 21 21 H 1.48511 * 109.46726 * 120.00317 * 19 17 15 22 22 H 1.48497 * 109.47439 * 240.00016 * 19 17 15 23 23 C 1.46498 * 120.00033 * 239.93294 * 14 12 11 24 24 C 1.53003 * 109.47248 * 275.21695 * 23 14 12 25 25 O 1.42901 * 109.46957 * 65.00078 * 24 23 14 26 26 C 1.46922 * 120.62890 * 173.63517 * 8 6 5 27 27 N 1.30983 * 106.12074 * 0.26336 * 5 4 3 28 28 O 1.20902 * 111.44165 * 359.53387 * 27 5 4 29 29 H 1.09002 * 109.47586 * 60.00022 * 1 2 3 30 30 H 1.09003 * 109.47022 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47075 * 299.99956 * 1 2 3 32 32 H 1.08997 * 109.47075 * 240.00044 * 2 1 3 33 33 H 1.08993 * 109.47118 * 119.99612 * 2 1 3 34 34 H 1.07998 * 128.03786 * 0.02562 * 4 3 2 35 35 H 1.08996 * 109.59081 * 353.37741 * 9 8 6 36 36 H 1.09005 * 109.58508 * 113.80286 * 9 8 6 37 37 H 1.09002 * 109.49060 * 65.31906 * 10 9 8 38 38 H 1.08994 * 109.50029 * 185.37877 * 10 9 8 39 39 H 1.08997 * 109.43107 * 301.30967 * 11 10 9 40 40 H 1.09001 * 109.48664 * 181.34955 * 11 10 9 41 41 H 0.97004 * 119.99909 * 179.97438 * 18 17 15 42 42 H 1.09003 * 109.46960 * 35.21596 * 23 14 12 43 43 H 1.08997 * 109.46933 * 155.22105 * 23 14 12 44 44 H 1.08992 * 109.47182 * 184.99652 * 24 23 14 45 45 H 1.09004 * 109.46901 * 305.00092 * 24 23 14 46 46 H 0.96702 * 113.99654 * 180.02562 * 25 24 23 47 47 H 1.09002 * 109.59223 * 6.62509 * 26 8 6 48 48 H 1.09008 * 109.70154 * 246.26806 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3016 2.1827 1.0853 5 6 2.7395 3.4196 0.5353 6 6 3.1670 4.6265 1.2841 7 8 3.0677 4.6573 2.4945 8 7 3.6656 5.6891 0.6216 9 6 3.9214 5.6175 -0.8235 10 6 5.3728 6.0298 -1.0883 11 6 5.6291 7.4070 -0.4720 12 6 5.4142 7.3385 1.0417 13 1 6.0870 6.5964 1.4714 14 7 5.6894 8.6496 1.6345 15 6 4.9625 9.7430 1.2456 16 1 3.9147 9.6376 1.0064 17 6 5.5738 10.9858 1.1535 18 7 6.8869 11.0729 1.1255 19 14 4.5331 12.5347 1.0691 20 1 3.0949 12.1680 1.1181 21 1 4.8590 13.4134 2.2212 22 1 4.8180 13.2542 -0.1983 23 6 6.7422 8.7909 2.6434 24 6 6.1772 8.4440 4.0223 25 8 5.8077 7.0639 4.0522 26 6 3.9632 6.9410 1.3306 27 7 2.6840 3.2790 -0.7658 28 8 2.2996 2.1752 -1.0750 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 2.2070 1.9140 2.1271 35 1 3.7617 4.5975 -1.1728 36 1 3.2477 6.2953 -1.3478 37 1 6.0460 5.2997 -0.6389 38 1 5.5484 6.0733 -2.1631 39 1 4.9392 8.1317 -0.9042 40 1 6.6543 7.7133 -0.6797 41 1 7.3141 11.9413 1.0608 42 1 7.5646 8.1155 2.4073 43 1 7.1057 9.8185 2.6477 44 1 6.9339 8.6341 4.7833 45 1 5.2997 9.0595 4.2206 46 1 5.4404 6.7734 4.8983 47 1 3.8310 6.7943 2.4026 48 1 3.2929 7.7278 0.9841 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691535726.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:41:17 Heat of formation + Delta-G solvation = 7.241889 kcal Electronic energy + Delta-G solvation = -30618.635019 eV Core-core repulsion = 26485.183838 eV Total energy + Delta-G solvation = -4133.451181 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -45.18500 -39.75078 -37.44303 -36.17879 -35.21681 -34.70250 -33.90861 -32.11755 -31.23368 -30.46738 -29.54316 -27.23079 -25.87698 -24.48867 -24.25400 -23.62127 -22.26847 -22.07179 -20.60928 -19.71535 -18.73047 -17.92011 -17.40214 -16.86880 -16.59803 -16.21574 -15.61397 -15.01701 -14.92932 -14.58785 -14.55837 -14.32773 -13.91990 -13.68205 -13.62125 -13.39945 -13.01544 -13.00729 -12.89850 -12.57710 -12.33694 -12.16555 -12.04365 -11.63655 -11.44865 -11.30823 -11.04072 -10.88462 -10.68657 -10.52265 -10.33272 -10.25046 -10.16071 -10.03467 -9.90732 -9.75452 -9.56559 -9.48327 -9.06361 -8.57432 -8.22375 -6.56173 -5.79484 -3.38051 1.05188 1.58919 2.73406 3.11363 3.32274 3.33204 3.42154 3.44580 3.92872 4.23841 4.45710 4.61433 4.75225 4.81958 4.89631 5.06201 5.20241 5.25673 5.28632 5.35805 5.38705 5.44263 5.55354 5.60417 5.66789 5.70365 5.78668 5.96501 6.05407 6.15062 6.18040 6.26441 6.36491 6.45846 6.46582 6.63223 6.66669 6.78755 6.90967 7.11353 7.18958 7.29629 7.66011 7.67266 7.80334 7.93511 8.32631 8.44617 8.50748 9.19129 9.80773 10.39349 11.20928 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.018959 B = 0.002951 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.530678 B = 9487.529257 C =10011.777304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.041 4.041 3 C -0.034 4.034 4 C -0.182 4.182 5 C -0.011 4.011 6 C 0.588 3.412 7 O -0.527 6.527 8 N -0.585 5.585 9 C 0.087 3.913 10 C -0.131 4.131 11 C -0.125 4.125 12 C 0.178 3.822 13 H 0.057 0.943 14 N -0.572 5.572 15 C -0.248 4.248 16 H 0.062 0.938 17 C 0.006 3.994 18 N -0.895 5.895 19 Si 0.899 3.101 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.290 1.290 23 C 0.146 3.854 24 C 0.053 3.947 25 O -0.567 6.567 26 C 0.105 3.895 27 N -0.329 5.329 28 O 0.110 5.890 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.179 0.821 35 H 0.108 0.892 36 H 0.067 0.933 37 H 0.057 0.943 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.062 0.938 41 H 0.254 0.746 42 H 0.026 0.974 43 H 0.119 0.881 44 H 0.021 0.979 45 H 0.039 0.961 46 H 0.357 0.643 47 H 0.094 0.906 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.250 -19.959 -2.260 21.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.079 4.079 3 C -0.097 4.097 4 C -0.204 4.204 5 C -0.170 4.170 6 C 0.372 3.628 7 O -0.402 6.402 8 N -0.317 5.317 9 C -0.036 4.036 10 C -0.170 4.170 11 C -0.164 4.164 12 C 0.069 3.931 13 H 0.075 0.925 14 N -0.291 5.291 15 C -0.378 4.378 16 H 0.079 0.921 17 C -0.193 4.193 18 N -0.539 5.539 19 Si 0.729 3.271 20 H -0.202 1.202 21 H -0.215 1.215 22 H -0.217 1.217 23 C 0.020 3.980 24 C -0.027 4.027 25 O -0.370 6.370 26 C -0.018 4.018 27 N -0.034 5.034 28 O 0.039 5.961 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.108 0.892 33 H 0.117 0.883 34 H 0.196 0.804 35 H 0.126 0.874 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.065 0.935 42 H 0.044 0.956 43 H 0.136 0.864 44 H 0.040 0.960 45 H 0.057 0.943 46 H 0.201 0.799 47 H 0.112 0.888 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.669 -18.859 -3.245 20.616 hybrid contribution -0.731 0.763 1.237 1.627 sum -8.400 -18.096 -2.008 20.052 Atomic orbital electron populations 1.21813 0.93411 1.02757 1.03033 1.20138 0.96685 0.86210 1.04913 1.24480 1.02478 0.97128 0.85628 1.22419 1.04856 0.91727 1.01438 1.23708 1.05206 0.98120 0.89929 1.16975 0.78627 0.80939 0.86214 1.90772 1.55988 1.80942 1.12519 1.48110 1.60855 1.13099 1.09641 1.22372 0.97196 1.03963 0.80028 1.21942 0.95314 0.99106 1.00624 1.21985 1.02312 0.94265 0.97870 1.20503 0.92631 0.88776 0.91184 0.92463 1.43697 1.40483 1.02694 1.42199 1.19094 0.91598 0.86393 1.40673 0.92053 1.25170 0.95314 0.98728 1.00071 1.69849 1.07659 1.23416 1.52966 0.86276 0.80061 0.83470 0.77304 1.20182 1.21540 1.21663 1.21234 0.89446 1.03384 0.83971 1.23211 0.97475 0.81316 1.00712 1.86613 1.85042 1.27210 1.38117 1.22410 0.99371 0.81900 0.98120 1.74098 1.14768 0.98899 1.15609 1.84793 1.60109 1.17474 1.33703 0.91976 0.91203 0.91941 0.89161 0.88331 0.80383 0.87439 0.91488 0.92434 0.91382 0.91539 0.91971 0.93550 0.95599 0.86352 0.96049 0.94281 0.79904 0.88753 0.91438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.89 37.16 0.37 -0.35 16 2 C -0.04 -0.21 6.50 -27.88 -0.18 -0.39 16 3 C -0.03 -0.32 6.73 -35.35 -0.24 -0.55 16 4 C -0.18 -2.13 10.93 -39.08 -0.43 -2.56 16 5 C -0.01 -0.16 6.89 -82.53 -0.57 -0.73 16 6 C 0.59 10.81 7.71 -12.11 -0.09 10.72 16 7 O -0.53 -10.98 16.38 5.38 0.09 -10.89 16 8 N -0.58 -10.78 2.97 -173.70 -0.52 -11.30 16 9 C 0.09 1.40 6.15 -3.71 -0.02 1.38 16 10 C -0.13 -2.14 6.08 -26.61 -0.16 -2.30 16 11 C -0.12 -2.52 5.11 -26.69 -0.14 -2.66 16 12 C 0.18 3.88 2.15 -67.81 -0.15 3.74 16 13 H 0.06 1.33 7.61 -51.93 -0.40 0.93 16 14 N -0.57 -13.98 2.38 -165.53 -0.39 -14.38 16 15 C -0.25 -6.49 8.29 -15.06 -0.12 -6.62 16 16 H 0.06 1.62 6.70 -52.49 -0.35 1.27 16 17 C 0.01 0.16 5.06 -17.43 -0.09 0.07 16 18 N -0.89 -24.85 11.09 55.49 0.62 -24.23 16 19 Si 0.90 21.21 29.58 -169.99 -5.03 16.18 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 23 C 0.15 3.48 5.61 -4.04 -0.02 3.46 16 24 C 0.05 1.09 7.39 37.16 0.27 1.36 16 25 O -0.57 -11.31 12.19 -35.23 -0.43 -11.74 16 26 C 0.10 2.18 5.78 -3.71 -0.02 2.16 16 27 N -0.33 -4.57 8.63 33.29 0.29 -4.28 16 28 O 0.11 1.26 11.18 17.24 0.19 1.45 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.22 8.14 -51.93 -0.42 -0.21 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.18 1.81 8.06 -52.49 -0.42 1.38 16 35 H 0.11 1.62 4.15 -58.56 -0.24 1.38 16 36 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.07 1.43 7.70 -51.93 -0.40 1.03 16 40 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 41 H 0.25 6.84 8.31 -40.82 -0.34 6.50 16 42 H 0.03 0.62 8.03 -51.93 -0.42 0.20 16 43 H 0.12 3.10 5.24 -51.93 -0.27 2.83 16 44 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 45 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.36 5.57 9.12 45.56 0.42 5.98 16 47 H 0.09 2.14 6.44 -51.93 -0.33 1.81 16 48 H 0.07 1.47 6.79 -51.92 -0.35 1.12 16 LS Contribution 383.69 15.07 5.78 5.78 Total: -1.00 -31.23 383.69 -7.55 -38.78 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -6.56 Total: 7.90 kcal Atomic # 6 Polarization: 8.31 SS G_CDS: -1.59 Total: 6.73 kcal Atomic # 7 Polarization: -54.18 SS G_CDS: -0.01 Total: -54.18 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: -0.15 Total: -21.19 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.18 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.23 -7.55 -38.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691535726.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.026 kcal (2) G-P(sol) polarization free energy of solvation -31.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds