Wall clock time and date at job start Tue Mar 31 2020 21:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 O 1.42902 * 109.47594 * 2 1 4 4 C 1.42895 * 114.00220 * 179.97438 * 3 2 1 5 5 H 1.08997 * 110.30550 * 27.83053 * 4 3 2 6 6 C 1.54381 * 110.43305 * 265.58658 * 4 3 2 7 7 N 1.48147 * 104.62167 * 264.95426 * 6 4 3 8 8 C 1.34768 * 127.84058 * 140.44049 * 7 6 4 9 9 O 1.21613 * 120.00021 * 353.89590 * 8 7 6 10 10 C 1.47401 * 120.00114 * 173.89997 * 8 7 6 11 11 C 1.47104 * 128.56484 * 352.94690 * 10 8 7 12 12 N 1.30010 * 105.32990 * 179.97438 * 11 10 8 13 13 O 1.20661 * 112.30198 * 359.97438 * 12 11 10 14 14 C 1.33489 * 113.15733 * 359.75566 * 13 12 11 15 15 C 1.50704 * 126.83128 * 180.30050 * 14 13 12 16 16 C 1.53000 * 109.46921 * 270.10319 * 15 14 13 17 17 C 1.48152 * 104.31931 * 320.41333 * 7 6 4 18 18 C 1.54290 * 110.33863 * 149.99986 * 4 3 2 19 19 H 1.08998 * 110.34590 * 359.97438 * 18 4 3 20 20 C 1.53004 * 110.34150 * 237.84839 * 18 4 3 21 21 N 1.46498 * 109.47260 * 175.00479 * 20 18 4 22 22 C 1.36934 * 120.00214 * 180.27553 * 21 20 18 23 23 H 1.07999 * 119.99719 * 359.72497 * 22 21 20 24 24 C 1.38817 * 119.99949 * 179.71901 * 22 21 20 25 25 N 1.31618 * 119.99860 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 119.99754 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47207 * 59.99921 * 26 24 22 28 28 H 1.48504 * 109.46985 * 180.02562 * 26 24 22 29 29 H 1.48507 * 109.47130 * 300.00226 * 26 24 22 30 30 H 1.09004 * 109.47603 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47508 * 300.00639 * 1 2 3 32 32 H 1.09007 * 109.47247 * 59.99930 * 1 2 3 33 33 H 1.09001 * 109.47508 * 239.99361 * 2 1 3 34 34 H 1.09003 * 109.47099 * 119.99590 * 2 1 3 35 35 H 1.09005 * 110.40829 * 23.74214 * 6 4 3 36 36 H 1.09006 * 110.40709 * 146.05251 * 6 4 3 37 37 H 1.08002 * 127.33267 * 359.96905 * 11 10 8 38 38 H 1.08993 * 109.47054 * 30.10676 * 15 14 13 39 39 H 1.09000 * 109.47182 * 150.10605 * 15 14 13 40 40 H 1.09004 * 109.46827 * 180.02562 * 16 15 14 41 41 H 1.08993 * 109.47548 * 300.00054 * 16 15 14 42 42 H 1.09000 * 109.46959 * 60.00149 * 16 15 14 43 43 H 1.09002 * 110.40527 * 280.79795 * 17 7 6 44 44 H 1.09003 * 110.40334 * 158.36944 * 17 7 6 45 45 H 1.08995 * 109.47440 * 54.99885 * 20 18 4 46 46 H 1.09004 * 109.46865 * 295.00311 * 20 18 4 47 47 H 0.97002 * 119.99510 * 359.97438 * 21 20 18 48 48 H 0.97007 * 119.99440 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4600 0.0006 5 1 3.8795 0.5886 -0.4763 6 6 3.9587 1.6137 1.4432 7 7 4.0924 3.0762 1.6386 8 6 3.8006 3.7929 2.7420 9 8 3.2686 3.2543 3.6939 10 6 4.1263 5.2295 2.7952 11 6 4.8868 6.0338 1.8265 12 7 4.9015 7.2382 2.3160 13 8 4.3112 7.3129 3.3657 14 6 3.7888 6.1490 3.7583 15 6 2.9900 5.8938 5.0105 16 6 3.9359 5.5047 6.1484 17 6 4.6201 3.5719 0.3461 18 6 3.8669 2.7512 -0.7228 19 1 2.9945 3.2991 -1.0789 20 6 4.7972 2.4182 -1.8909 21 7 5.1037 3.6420 -2.6355 22 6 5.9195 3.5891 -3.7340 23 1 6.3406 2.6457 -4.0488 24 6 6.2051 4.7479 -4.4429 25 7 5.6922 5.8976 -4.0588 26 14 7.3186 4.6757 -5.9410 27 1 6.7233 3.7711 -6.9571 28 1 7.4650 6.0375 -6.5149 29 1 8.6532 4.1613 -5.5415 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8932 -0.5138 0.8900 35 1 3.2454 1.1987 2.1552 36 1 4.9272 1.1245 1.5477 37 1 5.3372 5.6959 0.9048 38 1 2.4447 6.7970 5.2840 39 1 2.2837 5.0830 4.8320 40 1 3.3581 5.3197 7.0539 41 1 4.4812 4.6015 5.8749 42 1 4.6422 6.3155 6.3269 43 1 5.6928 3.3902 0.2788 44 1 4.4057 4.6343 0.2305 45 1 4.3083 1.7032 -2.5525 46 1 5.7212 1.9852 -1.5074 47 1 4.7251 4.4892 -2.3528 48 1 5.8922 6.7074 -4.5541 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692042184.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:41:29 Heat of formation + Delta-G solvation = -0.660767 kcal Electronic energy + Delta-G solvation = -30127.986838 eV Core-core repulsion = 25994.192972 eV Total energy + Delta-G solvation = -4133.793866 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.94297 -40.18996 -38.46000 -36.66928 -34.87790 -34.60436 -33.73865 -32.20355 -31.33853 -30.48801 -29.60614 -28.50911 -25.99046 -24.80328 -24.15042 -23.45367 -22.89523 -22.18381 -21.41567 -20.06360 -19.25574 -17.88040 -17.69873 -17.09564 -17.07255 -16.57184 -16.05659 -15.72255 -15.21836 -14.79905 -14.66233 -14.58440 -14.38272 -13.88841 -13.67537 -13.51402 -13.23789 -13.11028 -12.87130 -12.79151 -12.46483 -12.42626 -12.03022 -11.94341 -11.75726 -11.63679 -11.42850 -11.24449 -11.08633 -11.04994 -10.83669 -10.79570 -10.53453 -10.32659 -10.19319 -10.02673 -9.84230 -9.60765 -9.53414 -8.95194 -8.65991 -7.01764 -5.82799 -3.12796 1.00264 1.81283 2.63822 2.96768 3.16012 3.40531 3.45005 3.46453 3.58490 4.17768 4.25300 4.45883 4.50023 4.59737 4.63302 4.78703 4.95911 4.98005 5.02419 5.04831 5.11569 5.15151 5.25019 5.27834 5.37694 5.45410 5.51784 5.54233 5.61348 5.63476 5.65424 5.73884 5.81312 5.81852 5.86658 5.88208 5.98939 6.01005 6.06879 6.18080 6.22288 6.57203 6.66225 7.25172 7.46847 7.63488 8.04995 8.17930 8.34967 9.46759 10.01176 10.35916 11.39536 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.008201 B = 0.003875 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3413.444797 B = 7224.908552 C =10091.169667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.372 6.372 4 C 0.082 3.918 5 H 0.084 0.916 6 C 0.089 3.911 7 N -0.609 5.609 8 C 0.623 3.377 9 O -0.540 6.540 10 C -0.258 4.258 11 C 0.021 3.979 12 N -0.351 5.351 13 O 0.092 5.908 14 C 0.046 3.954 15 C -0.046 4.046 16 C -0.144 4.144 17 C 0.098 3.902 18 C -0.105 4.105 19 H 0.097 0.903 20 C 0.164 3.836 21 N -0.731 5.731 22 C -0.245 4.245 23 H 0.070 0.930 24 C -0.010 4.010 25 N -0.931 5.931 26 Si 0.907 3.093 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.286 1.286 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.050 0.950 34 H 0.046 0.954 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.211 0.789 38 H 0.089 0.911 39 H 0.110 0.890 40 H 0.070 0.930 41 H 0.064 0.936 42 H 0.057 0.943 43 H 0.086 0.914 44 H 0.090 0.910 45 H 0.025 0.975 46 H 0.024 0.976 47 H 0.384 0.616 48 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.787 -7.399 17.437 20.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.291 6.291 4 C 0.022 3.978 5 H 0.102 0.898 6 C -0.034 4.034 7 N -0.342 5.342 8 C 0.412 3.588 9 O -0.419 6.419 10 C -0.265 4.265 11 C -0.161 4.161 12 N -0.056 5.056 13 O 0.033 5.967 14 C -0.019 4.019 15 C -0.084 4.084 16 C -0.202 4.202 17 C -0.024 4.024 18 C -0.124 4.124 19 H 0.115 0.885 20 C 0.036 3.964 21 N -0.376 5.376 22 C -0.376 4.376 23 H 0.088 0.912 24 C -0.206 4.206 25 N -0.579 5.579 26 Si 0.738 3.262 27 H -0.213 1.213 28 H -0.217 1.217 29 H -0.212 1.212 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.107 0.893 36 H 0.100 0.900 37 H 0.228 0.772 38 H 0.108 0.892 39 H 0.129 0.871 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.076 0.924 43 H 0.104 0.896 44 H 0.108 0.892 45 H 0.043 0.957 46 H 0.042 0.958 47 H 0.218 0.782 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -6.584 -6.327 17.520 19.757 hybrid contribution 0.557 -0.689 -1.113 1.423 sum -6.027 -7.016 16.407 18.834 Atomic orbital electron populations 1.21730 0.93904 1.01993 1.03185 1.22521 0.95608 0.84135 0.99937 1.88017 1.20296 1.26088 1.94719 1.23054 0.81663 0.98999 0.94055 0.89812 1.22850 1.01639 0.81151 0.97749 1.48596 1.64186 1.08492 1.12927 1.16254 0.77695 0.83497 0.81307 1.90761 1.43769 1.71395 1.36023 1.21956 1.10052 0.96112 0.98387 1.26984 0.99677 0.88005 1.01445 1.73712 1.13666 1.21561 0.96619 1.84592 1.50925 1.32012 1.29197 1.24859 0.95360 0.84500 0.97177 1.20329 0.96670 1.03843 0.87541 1.21703 0.99368 1.02206 0.96914 1.22926 0.98832 0.99999 0.80647 1.22443 0.99893 0.94778 0.95334 0.88462 1.20705 0.94397 0.91120 0.90199 1.42313 1.58461 1.04502 1.32282 1.19139 1.21247 0.93910 1.03277 0.91177 1.24737 1.00844 0.95471 0.99569 1.69637 1.48281 0.98144 1.41819 0.86275 0.80498 0.76572 0.82850 1.21255 1.21653 1.21229 0.91304 0.91976 0.91762 0.93165 0.93577 0.89292 0.90047 0.77229 0.89243 0.87139 0.91100 0.91694 0.92352 0.89554 0.89195 0.95724 0.95808 0.78247 0.93339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 10.28 37.15 0.38 -1.04 16 2 C 0.05 0.57 6.50 37.15 0.24 0.82 16 3 O -0.37 -5.14 9.95 -35.23 -0.35 -5.49 16 4 C 0.08 1.04 3.19 -25.33 -0.08 0.96 16 5 H 0.08 0.93 7.38 -51.93 -0.38 0.55 16 6 C 0.09 1.10 6.81 -2.41 -0.02 1.08 16 7 N -0.61 -8.58 3.32 -170.57 -0.57 -9.15 16 8 C 0.62 9.42 7.90 -12.53 -0.10 9.32 16 9 O -0.54 -8.90 15.60 5.27 0.08 -8.82 16 10 C -0.26 -3.67 6.34 -102.89 -0.65 -4.32 16 11 C 0.02 0.31 10.70 -14.73 -0.16 0.15 16 12 N -0.35 -5.40 12.01 31.81 0.38 -5.01 16 13 O 0.09 1.26 11.06 18.66 0.21 1.47 16 14 C 0.05 0.58 6.80 -34.62 -0.24 0.34 16 15 C -0.05 -0.44 6.00 -27.88 -0.17 -0.60 16 16 C -0.14 -1.23 9.89 37.16 0.37 -0.86 16 17 C 0.10 1.40 5.26 -2.41 -0.01 1.39 16 18 C -0.10 -1.59 2.90 -89.22 -0.26 -1.85 16 19 H 0.10 1.67 7.98 -51.93 -0.41 1.25 16 20 C 0.16 2.96 5.38 -4.04 -0.02 2.94 16 21 N -0.73 -17.16 5.48 -59.91 -0.33 -17.49 16 22 C -0.24 -6.52 9.99 -15.06 -0.15 -6.67 16 23 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 24 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 25 N -0.93 -27.21 13.06 55.49 0.72 -26.48 16 26 Si 0.91 21.82 29.55 -169.99 -5.02 16.79 16 27 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 28 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 29 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.49 8.10 -51.93 -0.42 0.07 16 34 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.09 1.14 7.78 -51.93 -0.40 0.73 16 36 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.21 2.93 5.58 -52.49 -0.29 2.64 16 38 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.11 1.16 6.95 -51.93 -0.36 0.80 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.09 1.22 7.75 -51.93 -0.40 0.81 16 44 H 0.09 1.33 4.88 -51.93 -0.25 1.08 16 45 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.02 0.42 7.98 -51.93 -0.41 0.00 16 47 H 0.38 9.48 7.61 -40.82 -0.31 9.17 16 48 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 394.36 15.07 5.94 5.94 Total: -1.00 -32.05 394.36 -7.32 -39.37 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -7.43 Total: 7.57 kcal Atomic # 6 Polarization: 2.25 SS G_CDS: -0.96 Total: 1.29 kcal Atomic # 7 Polarization: -58.34 SS G_CDS: 0.21 Total: -58.13 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: -0.06 Total: -12.84 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.05 -7.32 -39.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692042184.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.709 kcal (2) G-P(sol) polarization free energy of solvation -32.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds