Wall clock time and date at job start Tue Mar 31 2020 21:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 O 1.42902 * 109.47594 * 2 1 4 4 C 1.42895 * 114.00220 * 179.97438 * 3 2 1 5 5 H 1.08997 * 110.30550 * 27.83053 * 4 3 2 6 6 C 1.54381 * 110.43305 * 265.58658 * 4 3 2 7 7 N 1.48147 * 104.62167 * 264.95426 * 6 4 3 8 8 C 1.34768 * 127.84058 * 140.44049 * 7 6 4 9 9 O 1.21613 * 120.00021 * 353.89590 * 8 7 6 10 10 C 1.47401 * 120.00114 * 173.89997 * 8 7 6 11 11 C 1.47104 * 128.56484 * 352.94690 * 10 8 7 12 12 N 1.30010 * 105.32990 * 179.97438 * 11 10 8 13 13 O 1.20661 * 112.30198 * 359.97438 * 12 11 10 14 14 C 1.33489 * 113.15733 * 359.75566 * 13 12 11 15 15 C 1.50704 * 126.83128 * 180.30050 * 14 13 12 16 16 C 1.53000 * 109.46921 * 270.10319 * 15 14 13 17 17 C 1.48152 * 104.31931 * 320.41333 * 7 6 4 18 18 C 1.54290 * 110.33863 * 149.99986 * 4 3 2 19 19 H 1.08998 * 110.34590 * 359.97438 * 18 4 3 20 20 C 1.53004 * 110.34150 * 237.84839 * 18 4 3 21 21 N 1.46498 * 109.47260 * 175.00479 * 20 18 4 22 22 C 1.36934 * 120.00214 * 180.27553 * 21 20 18 23 23 H 1.07999 * 119.99719 * 359.72497 * 22 21 20 24 24 C 1.38817 * 119.99949 * 179.71901 * 22 21 20 25 25 N 1.31618 * 119.99860 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 119.99754 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47207 * 59.99921 * 26 24 22 28 28 H 1.48504 * 109.46985 * 180.02562 * 26 24 22 29 29 H 1.48507 * 109.47130 * 300.00226 * 26 24 22 30 30 H 1.09004 * 109.47603 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47508 * 300.00639 * 1 2 3 32 32 H 1.09007 * 109.47247 * 59.99930 * 1 2 3 33 33 H 1.09001 * 109.47508 * 239.99361 * 2 1 3 34 34 H 1.09003 * 109.47099 * 119.99590 * 2 1 3 35 35 H 1.09005 * 110.40829 * 23.74214 * 6 4 3 36 36 H 1.09006 * 110.40709 * 146.05251 * 6 4 3 37 37 H 1.08002 * 127.33267 * 359.96905 * 11 10 8 38 38 H 1.08993 * 109.47054 * 30.10676 * 15 14 13 39 39 H 1.09000 * 109.47182 * 150.10605 * 15 14 13 40 40 H 1.09004 * 109.46827 * 180.02562 * 16 15 14 41 41 H 1.08993 * 109.47548 * 300.00054 * 16 15 14 42 42 H 1.09000 * 109.46959 * 60.00149 * 16 15 14 43 43 H 1.09002 * 110.40527 * 280.79795 * 17 7 6 44 44 H 1.09003 * 110.40334 * 158.36944 * 17 7 6 45 45 H 1.08995 * 109.47440 * 54.99885 * 20 18 4 46 46 H 1.09004 * 109.46865 * 295.00311 * 20 18 4 47 47 H 0.97002 * 119.99510 * 359.97438 * 21 20 18 48 48 H 0.97007 * 119.99440 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4600 0.0006 5 1 3.8795 0.5886 -0.4763 6 6 3.9587 1.6137 1.4432 7 7 4.0924 3.0762 1.6386 8 6 3.8006 3.7929 2.7420 9 8 3.2686 3.2543 3.6939 10 6 4.1263 5.2295 2.7952 11 6 4.8868 6.0338 1.8265 12 7 4.9015 7.2382 2.3160 13 8 4.3112 7.3129 3.3657 14 6 3.7888 6.1490 3.7583 15 6 2.9900 5.8938 5.0105 16 6 3.9359 5.5047 6.1484 17 6 4.6201 3.5719 0.3461 18 6 3.8669 2.7512 -0.7228 19 1 2.9945 3.2991 -1.0789 20 6 4.7972 2.4182 -1.8909 21 7 5.1037 3.6420 -2.6355 22 6 5.9195 3.5891 -3.7340 23 1 6.3406 2.6457 -4.0488 24 6 6.2051 4.7479 -4.4429 25 7 5.6922 5.8976 -4.0588 26 14 7.3186 4.6757 -5.9410 27 1 6.7233 3.7711 -6.9571 28 1 7.4650 6.0375 -6.5149 29 1 8.6532 4.1613 -5.5415 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8932 -0.5138 0.8900 35 1 3.2454 1.1987 2.1552 36 1 4.9272 1.1245 1.5477 37 1 5.3372 5.6959 0.9048 38 1 2.4447 6.7970 5.2840 39 1 2.2837 5.0830 4.8320 40 1 3.3581 5.3197 7.0539 41 1 4.4812 4.6015 5.8749 42 1 4.6422 6.3155 6.3269 43 1 5.6928 3.3902 0.2788 44 1 4.4057 4.6343 0.2305 45 1 4.3083 1.7032 -2.5525 46 1 5.7212 1.9852 -1.5074 47 1 4.7251 4.4892 -2.3528 48 1 5.8922 6.7074 -4.5541 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692042184.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:41:28 Heat of formation + Delta-G solvation = -21.047658 kcal Electronic energy + Delta-G solvation = -30128.870880 eV Core-core repulsion = 25994.192972 eV Total energy + Delta-G solvation = -4134.677908 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -46.06657 -41.32346 -39.57711 -37.79265 -36.37603 -35.67383 -34.86682 -33.78873 -32.45797 -31.47099 -31.02087 -29.62704 -27.36117 -26.22836 -25.05401 -24.78575 -23.97154 -23.33233 -22.56598 -21.29414 -20.37344 -19.21225 -18.91504 -18.71364 -18.12889 -17.63555 -17.14573 -16.81102 -16.56012 -16.19589 -15.84151 -15.68413 -15.37451 -15.22782 -15.01710 -14.78196 -14.53732 -14.42643 -13.96980 -13.67621 -13.53335 -13.36811 -13.15710 -12.99586 -12.91234 -12.82088 -12.65762 -12.48880 -12.36266 -12.26649 -12.18014 -12.01136 -11.88793 -11.74964 -11.67752 -11.45451 -11.25573 -10.90761 -10.66460 -10.59199 -9.77165 -8.97720 -7.92296 -5.20798 -0.05418 0.66272 1.50197 1.51895 1.57700 1.58026 1.90644 2.02373 2.53784 2.68011 3.05744 3.20791 3.37598 3.40462 3.46018 3.56335 3.78642 3.96630 4.01666 4.11093 4.21007 4.22842 4.25970 4.28400 4.33703 4.39462 4.49479 4.53150 4.54753 4.62503 4.66476 4.76723 4.80680 4.81346 4.90001 4.96947 5.05446 5.07621 5.09662 5.11037 5.25575 5.30608 5.31113 5.53872 6.27521 6.28731 6.35574 6.89868 7.08829 7.36705 8.10752 8.33478 9.30500 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.008201 B = 0.003875 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3413.444797 B = 7224.908552 C =10091.169667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.047 3.953 3 O -0.399 6.399 4 C 0.089 3.911 5 H 0.107 0.893 6 C 0.090 3.910 7 N -0.610 5.610 8 C 0.620 3.380 9 O -0.557 6.557 10 C -0.278 4.278 11 C 0.017 3.983 12 N -0.374 5.374 13 O 0.096 5.904 14 C 0.059 3.941 15 C -0.045 4.045 16 C -0.140 4.140 17 C 0.105 3.895 18 C -0.096 4.096 19 H 0.073 0.927 20 C 0.167 3.833 21 N -0.743 5.743 22 C -0.242 4.242 23 H 0.079 0.921 24 C -0.072 4.072 25 N -0.967 5.967 26 Si 0.968 3.032 27 H -0.280 1.280 28 H -0.300 1.300 29 H -0.277 1.277 30 H 0.093 0.907 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.086 0.914 36 H 0.107 0.893 37 H 0.211 0.789 38 H 0.119 0.881 39 H 0.102 0.898 40 H 0.093 0.907 41 H 0.043 0.957 42 H 0.065 0.935 43 H 0.092 0.908 44 H 0.080 0.920 45 H 0.026 0.974 46 H 0.041 0.959 47 H 0.374 0.626 48 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.689 -9.095 18.432 21.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.029 4.029 3 O -0.318 6.318 4 C 0.030 3.970 5 H 0.125 0.875 6 C -0.032 4.032 7 N -0.342 5.342 8 C 0.411 3.589 9 O -0.438 6.438 10 C -0.285 4.285 11 C -0.165 4.165 12 N -0.079 5.079 13 O 0.037 5.963 14 C -0.005 4.005 15 C -0.083 4.083 16 C -0.197 4.197 17 C -0.017 4.017 18 C -0.116 4.116 19 H 0.091 0.909 20 C 0.040 3.960 21 N -0.386 5.386 22 C -0.374 4.374 23 H 0.097 0.903 24 C -0.264 4.264 25 N -0.617 5.617 26 Si 0.798 3.202 27 H -0.206 1.206 28 H -0.226 1.226 29 H -0.203 1.203 30 H 0.112 0.888 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.105 0.895 36 H 0.125 0.875 37 H 0.227 0.773 38 H 0.137 0.863 39 H 0.120 0.880 40 H 0.112 0.888 41 H 0.062 0.938 42 H 0.084 0.916 43 H 0.110 0.890 44 H 0.098 0.902 45 H 0.044 0.956 46 H 0.059 0.941 47 H 0.206 0.794 48 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -6.486 -8.085 18.520 21.224 hybrid contribution 0.450 -0.240 -1.365 1.458 sum -6.036 -8.326 17.155 20.001 Atomic orbital electron populations 1.21757 0.93363 1.03339 1.02221 1.22760 0.96140 0.82806 1.01188 1.87990 1.20649 1.28336 1.94864 1.23000 0.81743 0.98234 0.94043 0.87536 1.23022 1.02908 0.80110 0.97207 1.48633 1.63744 1.09363 1.12441 1.16351 0.77506 0.83753 0.81332 1.90743 1.44703 1.71761 1.36561 1.21995 1.11189 0.96183 0.99152 1.27040 0.99755 0.88062 1.01596 1.73689 1.14743 1.22009 0.97482 1.84568 1.50736 1.32338 1.28643 1.25462 0.94059 0.83585 0.97431 1.20532 0.96469 1.04961 0.86353 1.21691 0.99403 1.01442 0.97203 1.22795 0.98901 0.99388 0.80661 1.22229 0.98437 0.96199 0.94759 0.90851 1.20820 0.95558 0.89031 0.90586 1.42513 1.57995 1.05905 1.32190 1.19566 1.20367 0.93988 1.03489 0.90316 1.25491 1.02965 0.95399 1.02577 1.69796 1.50271 0.98530 1.43140 0.85292 0.79138 0.75971 0.79827 1.20577 1.22637 1.20282 0.88811 0.92761 0.92882 0.92177 0.91931 0.89507 0.87522 0.77266 0.86256 0.87956 0.88813 0.93755 0.91601 0.89025 0.90162 0.95589 0.94110 0.79395 0.94169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 10.28 71.98 0.74 -1.86 16 2 C 0.05 0.90 6.50 71.98 0.47 1.36 16 3 O -0.40 -10.56 9.95 -148.98 -1.48 -12.04 16 4 C 0.09 2.12 3.19 31.50 0.10 2.22 16 5 H 0.11 2.06 7.38 -2.39 -0.02 2.04 16 6 C 0.09 2.04 6.81 86.53 0.59 2.63 16 7 N -0.61 -16.77 3.32 -811.83 -2.69 -19.46 16 8 C 0.62 18.59 7.90 86.66 0.68 19.28 16 9 O -0.56 -18.06 15.60 -4.07 -0.06 -18.12 16 10 C -0.28 -7.93 6.34 -18.74 -0.12 -8.05 16 11 C 0.02 0.52 10.70 87.29 0.93 1.45 16 12 N -0.37 -11.64 12.01 -54.19 -0.65 -12.29 16 13 O 0.10 2.60 11.06 77.02 0.85 3.45 16 14 C 0.06 1.46 6.80 25.48 0.17 1.64 16 15 C -0.05 -0.79 6.00 29.85 0.18 -0.61 16 16 C -0.14 -2.13 9.89 71.98 0.71 -1.42 16 17 C 0.10 2.98 5.26 86.53 0.45 3.44 16 18 C -0.10 -2.88 2.90 -9.88 -0.03 -2.91 16 19 H 0.07 2.57 7.98 -2.39 -0.02 2.55 16 20 C 0.17 5.83 5.38 86.38 0.46 6.29 16 21 N -0.74 -34.86 5.48 -343.45 -1.88 -36.75 16 22 C -0.24 -12.78 9.99 84.04 0.84 -11.94 16 23 H 0.08 3.94 7.83 -2.91 -0.02 3.92 16 24 C -0.07 -3.98 5.50 84.86 0.47 -3.51 16 25 N -0.97 -57.59 13.06 21.65 0.28 -57.31 16 26 Si 0.97 44.89 29.55 68.60 2.03 46.92 16 27 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 28 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 29 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 30 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 33 H 0.06 1.02 8.10 -2.39 -0.02 1.00 16 34 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.09 2.06 7.78 -2.38 -0.02 2.04 16 36 H 0.11 1.91 8.14 -2.38 -0.02 1.90 16 37 H 0.21 6.12 5.58 -2.91 -0.02 6.11 16 38 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.10 2.04 6.95 -2.39 -0.02 2.02 16 40 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 41 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.09 2.52 7.75 -2.39 -0.02 2.50 16 44 H 0.08 2.45 4.88 -2.39 -0.01 2.44 16 45 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.04 1.33 7.98 -2.38 -0.02 1.31 16 47 H 0.37 18.88 7.61 -92.71 -0.71 18.18 16 48 H 0.25 14.62 8.31 -92.70 -0.77 13.85 16 Total: -1.00 -68.91 394.36 3.32 -65.59 By element: Atomic # 1 Polarization: 31.74 SS G_CDS: 0.27 Total: 32.01 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: 6.66 Total: 8.01 kcal Atomic # 7 Polarization: -120.87 SS G_CDS: -4.94 Total: -125.81 kcal Atomic # 8 Polarization: -26.02 SS G_CDS: -0.69 Total: -26.72 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -68.91 3.32 -65.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692042184.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.539 kcal (2) G-P(sol) polarization free energy of solvation -68.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds