Wall clock time and date at job start Tue Mar 31 2020 21:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50699 * 109.47198 * 2 1 4 4 O 1.33651 * 125.80328 * 270.02769 * 3 2 1 5 5 C 1.34210 * 110.91296 * 179.97438 * 4 3 2 6 6 C 1.34183 * 109.12032 * 0.26113 * 5 4 3 7 7 C 1.36417 * 125.79940 * 89.98310 * 3 2 1 8 8 C 1.47378 * 127.19601 * 0.03522 * 7 3 2 9 9 O 1.21612 * 119.99824 * 0.02562 * 8 7 3 10 10 N 1.34778 * 120.00004 * 180.02562 * 8 7 3 11 11 C 1.46502 * 119.99784 * 180.02562 * 10 8 7 12 12 H 1.09004 * 109.47268 * 34.60520 * 11 10 8 13 13 C 1.52996 * 109.46877 * 274.60437 * 11 10 8 14 14 C 1.52997 * 109.47014 * 154.60435 * 11 10 8 15 15 N 1.46898 * 109.47023 * 305.18346 * 14 11 10 16 16 C 1.46905 * 111.00010 * 163.94051 * 15 14 11 17 17 C 1.46904 * 111.00097 * 287.88706 * 15 14 11 18 18 C 1.50699 * 109.47030 * 170.00320 * 17 15 14 19 19 O 1.21283 * 120.00429 * 359.97438 * 18 17 15 20 20 N 1.34777 * 119.99323 * 180.02562 * 18 17 15 21 21 C 1.37104 * 119.99452 * 179.97438 * 20 18 17 22 22 H 1.07997 * 120.00167 * 359.97438 * 21 20 18 23 23 C 1.38954 * 119.99748 * 180.02562 * 21 20 18 24 24 N 1.31418 * 119.99418 * 180.02562 * 23 21 20 25 25 Si 1.86788 * 120.00156 * 359.97438 * 23 21 20 26 26 H 1.48507 * 109.47050 * 90.00575 * 25 23 21 27 27 H 1.48505 * 109.47431 * 210.00128 * 25 23 21 28 28 H 1.48497 * 109.47531 * 330.00701 * 25 23 21 29 29 H 1.09004 * 109.46573 * 299.99930 * 1 2 3 30 30 H 1.08991 * 109.47215 * 59.99590 * 1 2 3 31 31 H 1.08998 * 109.46936 * 180.02562 * 1 2 3 32 32 H 1.08991 * 109.46748 * 239.99770 * 2 1 3 33 33 H 1.09001 * 109.46966 * 119.99930 * 2 1 3 34 34 H 1.08000 * 125.44197 * 179.97438 * 5 4 3 35 35 H 1.07998 * 127.02077 * 179.72973 * 6 5 4 36 36 H 0.96996 * 119.99851 * 0.02562 * 10 8 7 37 37 H 1.09004 * 109.47239 * 300.00101 * 13 11 10 38 38 H 1.08996 * 109.47417 * 60.00385 * 13 11 10 39 39 H 1.09003 * 109.46933 * 179.97438 * 13 11 10 40 40 H 1.09000 * 109.47080 * 65.18627 * 14 11 10 41 41 H 1.09003 * 109.47163 * 185.18357 * 14 11 10 42 42 H 1.09002 * 109.47309 * 54.88917 * 16 15 14 43 43 H 1.08997 * 109.47489 * 174.89298 * 16 15 14 44 44 H 1.08997 * 109.46803 * 294.89468 * 16 15 14 45 45 H 1.09002 * 109.47535 * 290.00710 * 17 15 14 46 46 H 1.09001 * 109.46869 * 50.00081 * 17 15 14 47 47 H 0.96994 * 120.00991 * 0.02562 * 20 18 17 48 48 H 0.97003 * 119.99439 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2926 2.1581 -1.0840 5 6 2.7245 3.3811 -0.7391 6 6 2.7632 3.4724 0.5991 7 6 2.2981 2.1732 1.1064 8 6 2.1547 1.7668 2.5158 9 8 1.7607 0.6492 2.7892 10 7 2.4602 2.6336 3.5016 11 6 2.3182 2.2293 4.9025 12 1 2.5648 1.1723 5.0025 13 6 0.8758 2.4618 5.3566 14 6 3.2663 3.0585 5.7712 15 7 4.6369 2.9327 5.2577 16 6 5.5029 3.9854 5.8054 17 6 5.1851 1.5997 5.5413 18 6 6.4823 1.4210 4.7954 19 8 6.9080 2.3157 4.0961 20 7 7.1689 0.2663 4.9048 21 6 8.3488 0.1035 4.2259 22 1 8.7278 0.9003 3.6031 23 6 9.0564 -1.0871 4.3382 24 7 10.1876 -1.2429 3.6877 25 14 8.4004 -2.4654 5.4147 26 1 7.5247 -3.3512 4.6060 27 1 9.5363 -3.2536 5.9567 28 1 7.6186 -1.8876 6.5372 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 3.0016 4.1649 -1.4285 35 1 3.0709 4.3266 1.1840 36 1 2.7741 3.5251 3.2834 37 1 0.6293 3.5189 5.2567 38 1 0.2004 1.8711 4.7378 39 1 0.7700 2.1606 6.3988 40 1 2.9625 4.1049 5.7438 41 1 3.2285 2.6959 6.7984 42 1 5.4570 3.9638 6.8942 43 1 6.5298 3.8162 5.4816 44 1 5.1644 4.9574 5.4468 45 1 5.3649 1.5009 6.6118 46 1 4.4738 0.8386 5.2207 47 1 6.8279 -0.4497 5.4632 48 1 10.6814 -2.0742 3.7658 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699450504.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:28:07 Heat of formation + Delta-G solvation = -77.927227 kcal Electronic energy + Delta-G solvation = -30120.167313 eV Core-core repulsion = 25983.022922 eV Total energy + Delta-G solvation = -4137.144391 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.52366 -40.82419 -40.26378 -38.28776 -36.18248 -35.60890 -34.91097 -33.87084 -33.76001 -31.76423 -29.76602 -29.66039 -27.96447 -26.49394 -25.43899 -24.06394 -23.51308 -22.38967 -21.51699 -21.12221 -20.70353 -20.13742 -18.87124 -17.89474 -17.28034 -17.26069 -16.81621 -16.79398 -16.66364 -15.94877 -15.67074 -15.62501 -15.36083 -15.24115 -15.07566 -14.95973 -14.58826 -14.35669 -14.11962 -13.92331 -13.61632 -13.53985 -13.39253 -13.25374 -13.13842 -12.91487 -12.82702 -12.68609 -12.48675 -12.43807 -12.40101 -12.00094 -11.96829 -11.68745 -11.47509 -10.93131 -10.79093 -10.36042 -10.23948 -9.96658 -9.50614 -9.19821 -8.42987 -6.02800 0.37910 1.16097 1.26626 1.32686 1.40347 1.85816 1.94819 2.20283 2.30644 2.46651 2.65987 3.13020 3.21269 3.57617 3.78217 3.88568 3.92768 4.05062 4.14583 4.18842 4.30115 4.31187 4.33115 4.46102 4.48171 4.56997 4.62029 4.66347 4.72621 4.74419 4.80738 4.85592 4.94906 5.03774 5.06679 5.12521 5.22012 5.27593 5.32576 5.40429 5.51266 5.63411 5.88790 6.00725 6.06427 6.20539 6.58470 6.67376 6.87326 7.33428 7.38735 7.95724 8.74720 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.009160 B = 0.003663 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3056.189513 B = 7641.710005 C = 8831.657071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.054 4.054 3 C 0.061 3.939 4 O -0.183 6.183 5 C -0.035 4.035 6 C -0.197 4.197 7 C -0.265 4.265 8 C 0.584 3.416 9 O -0.579 6.579 10 N -0.690 5.690 11 C 0.143 3.857 12 H 0.064 0.936 13 C -0.150 4.150 14 C 0.050 3.950 15 N -0.534 5.534 16 C 0.029 3.971 17 C 0.054 3.946 18 C 0.453 3.547 19 O -0.599 6.599 20 N -0.596 5.596 21 C -0.325 4.325 22 H 0.057 0.943 23 C -0.013 4.013 24 N -0.934 5.934 25 Si 0.959 3.041 26 H -0.262 1.262 27 H -0.271 1.271 28 H -0.233 1.233 29 H 0.045 0.955 30 H 0.064 0.936 31 H 0.082 0.918 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.247 0.753 35 H 0.174 0.826 36 H 0.409 0.591 37 H 0.073 0.927 38 H 0.043 0.957 39 H 0.084 0.916 40 H 0.107 0.893 41 H 0.072 0.928 42 H 0.038 0.962 43 H 0.048 0.952 44 H 0.082 0.918 45 H 0.079 0.921 46 H 0.099 0.901 47 H 0.386 0.614 48 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.673 8.532 1.325 25.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.091 4.091 3 C 0.008 3.992 4 O -0.079 6.079 5 C -0.100 4.100 6 C -0.216 4.216 7 C -0.270 4.270 8 C 0.373 3.627 9 O -0.461 6.461 10 N -0.340 5.340 11 C 0.038 3.962 12 H 0.082 0.918 13 C -0.209 4.209 14 C -0.077 4.077 15 N -0.258 5.258 16 C -0.119 4.119 17 C -0.078 4.078 18 C 0.241 3.759 19 O -0.483 6.483 20 N -0.238 5.238 21 C -0.454 4.454 22 H 0.075 0.925 23 C -0.211 4.211 24 N -0.574 5.574 25 Si 0.779 3.221 26 H -0.186 1.186 27 H -0.196 1.196 28 H -0.156 1.156 29 H 0.064 0.936 30 H 0.083 0.917 31 H 0.101 0.899 32 H 0.113 0.887 33 H 0.110 0.890 34 H 0.263 0.737 35 H 0.192 0.808 36 H 0.244 0.756 37 H 0.092 0.908 38 H 0.062 0.938 39 H 0.103 0.897 40 H 0.125 0.875 41 H 0.090 0.910 42 H 0.056 0.944 43 H 0.067 0.933 44 H 0.101 0.899 45 H 0.097 0.903 46 H 0.117 0.883 47 H 0.221 0.779 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -23.524 8.241 0.240 24.927 hybrid contribution 0.926 -0.502 1.049 1.487 sum -22.597 7.739 1.288 23.921 Atomic orbital electron populations 1.21609 0.92047 1.03409 1.01837 1.20395 0.97999 0.85940 1.04743 1.23114 0.97632 0.95004 0.83438 1.83756 1.65447 1.23901 1.34821 1.24657 1.02497 0.85935 0.96948 1.23145 1.05475 0.97692 0.95312 1.21392 1.14328 0.97415 0.93834 1.17390 0.76534 0.84184 0.84593 1.90695 1.49407 1.21446 1.84585 1.45532 1.66170 1.16920 1.05375 1.21082 0.95874 0.99163 0.80089 0.91796 1.22050 0.93934 1.02747 1.02152 1.22565 0.86186 1.02128 0.96841 1.61458 1.02597 1.01232 1.60529 1.22400 0.97721 0.94731 0.97018 1.21805 0.93463 0.93864 0.98624 1.20831 0.87423 0.82442 0.85215 1.90502 1.71388 1.42581 1.43814 1.42084 1.21363 1.15692 1.44651 1.18990 0.98538 1.02080 1.25810 0.92498 1.26034 0.95652 1.00393 0.99041 1.69799 1.16142 1.27974 1.43532 0.85443 0.79145 0.78169 0.79299 1.18637 1.19592 1.15645 0.93562 0.91660 0.89912 0.88685 0.89029 0.73680 0.80815 0.75556 0.90774 0.93787 0.89679 0.87525 0.90973 0.94401 0.93323 0.89898 0.90347 0.88345 0.77873 0.91172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.63 9.90 71.98 0.71 -1.92 16 2 C -0.05 -1.32 5.94 29.85 0.18 -1.15 16 3 C 0.06 1.71 6.63 25.26 0.17 1.87 16 4 O -0.18 -4.57 10.52 4.52 0.05 -4.52 16 5 C -0.04 -0.71 12.03 66.89 0.80 0.10 16 6 C -0.20 -4.55 10.60 23.65 0.25 -4.30 16 7 C -0.27 -7.71 6.31 -18.99 -0.12 -7.83 16 8 C 0.58 18.09 7.78 86.65 0.67 18.77 16 9 O -0.58 -20.64 14.50 -4.07 -0.06 -20.70 16 10 N -0.69 -17.22 4.79 -445.85 -2.14 -19.35 16 11 C 0.14 3.06 2.52 44.99 0.11 3.17 16 12 H 0.06 1.70 6.22 -2.38 -0.01 1.69 16 13 C -0.15 -2.44 9.49 71.98 0.68 -1.75 16 14 C 0.05 0.92 4.53 86.30 0.39 1.31 16 15 N -0.53 -14.86 4.17 -927.03 -3.87 -18.73 16 16 C 0.03 0.79 9.19 127.69 1.17 1.96 16 17 C 0.05 1.74 5.30 85.56 0.45 2.19 16 18 C 0.45 21.08 7.42 87.66 0.65 21.74 16 19 O -0.60 -33.10 13.96 -3.04 -0.04 -33.14 16 20 N -0.60 -29.36 5.09 -306.99 -1.56 -30.92 16 21 C -0.32 -19.54 10.16 84.04 0.85 -18.68 16 22 H 0.06 4.04 7.39 -2.91 -0.02 4.02 16 23 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 24 N -0.93 -57.36 13.96 21.67 0.30 -57.06 16 25 Si 0.96 40.44 27.73 68.60 1.90 42.35 16 26 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 27 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 28 H -0.23 -8.37 6.52 99.48 0.65 -7.72 16 29 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.09 1.98 8.14 -2.39 -0.02 1.97 16 33 H 0.09 2.69 6.48 -2.39 -0.02 2.67 16 34 H 0.25 2.51 8.06 -2.91 -0.02 2.49 16 35 H 0.17 3.17 7.74 -2.91 -0.02 3.14 16 36 H 0.41 9.03 7.78 -92.71 -0.72 8.31 16 37 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 38 H 0.04 0.90 8.14 -2.39 -0.02 0.89 16 39 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.11 1.46 7.99 -2.39 -0.02 1.44 16 41 H 0.07 1.06 8.05 -2.39 -0.02 1.04 16 42 H 0.04 0.85 8.13 -2.39 -0.02 0.83 16 43 H 0.05 1.81 5.79 -2.39 -0.01 1.80 16 44 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 45 H 0.08 2.10 8.12 -2.39 -0.02 2.08 16 46 H 0.10 3.04 6.50 -2.39 -0.02 3.03 16 47 H 0.39 16.18 5.76 -92.71 -0.53 15.65 16 48 H 0.28 15.66 8.31 -92.71 -0.77 14.89 16 Total: -1.00 -83.49 396.22 1.71 -81.78 By element: Atomic # 1 Polarization: 45.39 SS G_CDS: -0.32 Total: 45.07 kcal Atomic # 6 Polarization: 7.79 SS G_CDS: 7.45 Total: 15.24 kcal Atomic # 7 Polarization: -118.81 SS G_CDS: -7.27 Total: -126.07 kcal Atomic # 8 Polarization: -58.31 SS G_CDS: -0.05 Total: -58.36 kcal Atomic # 14 Polarization: 40.44 SS G_CDS: 1.90 Total: 42.35 kcal Total: -83.49 1.71 -81.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699450504.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.849 kcal (2) G-P(sol) polarization free energy of solvation -83.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds